BAC Information

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BAC

Clone NameB6Ng01-075I23
Chromosome6 (Build37)
Map Location 56,047,524 - 56,212,026
singlet/doubletdoublet
Overlap genePde1c
Upstream geneCrhr2, Inmt, C330043M08Rik, Aqp1, Ghrhr, Adcyap1r1, LOC100042219, Neurod6, LOC100041339, Ccdc129, Gsbs, LOC100041357
Downstream geneEG666688, Lsm5, 5830411G16Rik, LOC100042288, Kbtbd2, Fkbp9, Nt5c3, LOC100042327, V1rc21, V1rc19, V1rc20, EG434016, V1rc32, V1rc30, V1rc1, V1rc3, EG626397, V1rc4, V1rc5, V1rc7, V1rc6
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-075I23.bB6Ng01-075I23.g
ACCDH892087DH892088
length7661,087
definitionDH892087|Mus musculus domesticus DNA, BAC clone: B6Ng01-075I23, 5' end.DH892088|Mus musculus domesticus DNA, BAC clone: B6Ng01-075I23, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(56,047,524 - 56,048,289)(56,211,397 - 56,212,026)
sequence
gaattcattgagtaggtatggtggtttgaacaataacagctccgataatc
ttttaaatttgaatgcttggtaccctggttagtggaactgggaaggatta
ggagctgtggttatgttaaagtaggtgaggtctgggtataggagttgtgt
cactggggatgggttttgagatttcaaatgcccacaccagacctggtctc
tctctctgtctctctttctgtctgtctgtcatgaactctactaccatcta
taatccaaattgaatgcttcctcttataaaatgttaccttagtcacggtg
tctcctcacacacatacagtagactggttgtccagcaaggcccagagttc
cacctatcttcaccctttgagtgctataccacccagcttttctttaatgt
gggttctggaaatgaaactggtgtgattatgttctgaagatgaacacttt
atcaaccatgtgggccatcttcccagcctttattctgctttcttaattta
aagagtctattcaagttatgagtctttagaattcgcaaatattttataag
taggcaaggcatacaaaagaataagcaagtacattgaaacagactttatt
tcatttttgtcaactattaaggtttaaaaacatctatttcaggataaaac
tttgagggtcaggtaacaatactcatgcaagtgtgctttgtaaacaatgg
agtataataatgtaagtgtttgggttttactctaagggaagtgtgtgtgt
gtgtgtgtgtgtgtgt
gaattcactgtttaaagataatttggtcaaggaagaaaaattttaaattt
ctagacttgaataaaaatgaaaatctgtgggacaaaatgaaggtagcact
aagaggaagtttatagcagtatgtgcctccatcaaacttttgacagatca
catattaaacttaatgatgcacataaaagctttggaaaaacaagaaaaac
taatatcccaaacaaacagattgcaaaagatagtcagaaacagggctgga
ctgaatgaaatagaatcattcaattgtgtgattgtgtgaaacatcaacac
aatgaatatgaagaaccagagaaacaaagagttatatctatgaaaagatt
aacaaggttgacaaacctttatccaaattaaccaagaaagagaggattca
agtcaataaaactatagataaaatgggaaaaattaccaccaactgtggaa
atttggagaactacaatgatatactttgcatatttacatttcataaatat
ggagggatttctaggtatttatgagctaccaagtttaaatgtagataaat
aaatagacttataatagccaagagaaagctacagtaattaaaaatattcc
aagtaaaacaaaaaccaaagagcaacagatagattcatcctagaattcaa
ccagacctttaaagaattaacttaattattcctcaaattattccgtacaa
ttgaaagactttttatactaatagttgggataaagtatgcagctattgac
ttggtcattgattcaaatatccttgggaaatgcatgatttaagttttaat
ttaagttttcaaatctgaattttattcccattctttagtgccagagtcat
ggtcaagaatgttaaatagaagagttatcaaagggtgaactaaggtcata
cataggttggcactatgaggaagccaatgtgatacttatcggctacagag
agcccacttcatcttcagcatcaaactgcttttcctataactgtcttcta
tacagtgagagataattatcacattgtcagaaaagaaaatgcatacccac
cccacagaagttatcatcggtaaatctttgaactgac
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr6_56047524_56048289
seq2: B6Ng01-075I23.b_49_814

seq1  GAATTCATTGAGTAGGTATGGTGGTTTGAACAATAACAGCTCCGATAATC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCATTGAGTAGGTATGGTGGTTTGAACAATAACAGCTCCGATAATC  50

seq1  TTTTAAATTTGAATGCTTGGTACCCTGGTTAGTGGAACTGGGAAGGATTA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTAAATTTGAATGCTTGGTACCCTGGTTAGTGGAACTGGGAAGGATTA  100

seq1  GGAGCTGTGGTTATGTTAAAGTAGGTGAGGTCTGGGTATAGGAGTTGTGT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAGCTGTGGTTATGTTAAAGTAGGTGAGGTCTGGGTATAGGAGTTGTGT  150

seq1  CACTGGGGATGGGTTTTGAGATTTCAAATGCCCACACCAGACCTGGTCTC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACTGGGGATGGGTTTTGAGATTTCAAATGCCCACACCAGACCTGGTCTC  200

seq1  TCTCTCTGTCTCTCTTTCTGTCTGTCTGTCATGAACTCTACTACCATCTA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTCTCTGTCTCTCTTTCTGTCTGTCTGTCATGAACTCTACTACCATCTA  250

seq1  TAATCCAAATTGAATGCTTCCTCTTATAAAATGTTACCTTAGTCACGGTG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAATCCAAATTGAATGCTTCCTCTTATAAAATGTTACCTTAGTCACGGTG  300

seq1  TCTCCTCACACACATACAGTAGACTGGTTGTCCAGCAAGGCCCAGAGTTC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTCCTCACACACATACAGTAGACTGGTTGTCCAGCAAGGCCCAGAGTTC  350

seq1  CACCTATCTTCACCCTTTGAGTGCTATACCACCCAGCTTTTCTTTAATGT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACCTATCTTCACCCTTTGAGTGCTATACCACCCAGCTTTTCTTTAATGT  400

seq1  GGGTTCTGGAAATGAAACTGGTGTGATTATGTTCTGAAGATGAACACTTT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGTTCTGGAAATGAAACTGGTGTGATTATGTTCTGAAGATGAACACTTT  450

seq1  ATCAACCATGTGGGCCATCTTCCCAGCCTTTATTCTGCTTTCTTAATTTA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCAACCATGTGGGCCATCTTCCCAGCCTTTATTCTGCTTTCTTAATTTA  500

seq1  AAGAGTCTATTCAAGTTATGAGTCTTTAGAATTCGCAAATATTTTATAAG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGAGTCTATTCAAGTTATGAGTCTTTAGAATTCGCAAATATTTTATAAG  550

seq1  TAGGCAAGGCATACAAAAGAATAAGCAAGTACATTGAAACAGACTTTATT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGGCAAGGCATACAAAAGAATAAGCAAGTACATTGAAACAGACTTTATT  600

seq1  TCATTTTTGTCAACTATTAAGGTTTAAAAACATCTATTTCAGGATAAAAC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCATTTTTGTCAACTATTAAGGTTTAAAAACATCTATTTCAGGATAAAAC  650

seq1  TTTGAGGGTCAGGTAACAATACTCATGCAAGTGTGCTTTGTAAACAATGG  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGAGGGTCAGGTAACAATACTCATGCAAGTGTGCTTTGTAAACAATGG  700

seq1  AGTATAATAATGTAAGTGTTTGGGTTTTACTCTAAGGGAAGTGTGTGTGT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTATAATAATGTAAGTGTTTGGGTTTTACTCTAAGGGAAGTGTGTGTGT  750

seq1  GTGTGTGTGTGTGTGT  766
      ||||||||||||||||
seq2  GTGTGTGTGTGTGTGT  766

seq1: chr6_56211397_56212026
seq2: B6Ng01-075I23.g_606_1155 (reverse)

seq1  GTCAGTTGCAAAGAAGAAATATTTTTAAGTATTTATAAATTTAGAATCTG  50
                                                        
seq2  --------------------------------------------------  0

seq1  TTTCAAAGCATGTTAAAATATGTTCAG-TCAAAGATTTACCGATGAATTA  99
                             |||| ||||||||||||||||||  ||
seq2  ----------------------GTCAGTTCAAAGATTTACCGATGA--TA  26

seq1  ACTTCTGT-GGGTGGGTATGGATTTTCTTTTCCTGAACAATGTGATATTT  148
      |||||||| ||||||||||| |||||||||| ||| ||||||||||| ||
seq2  ACTTCTGTGGGGTGGGTATGCATTTTCTTTT-CTG-ACAATGTGATAATT  74

seq1  AATCCTCTCACTGTATAG-AGACAGGTTATAGGAAAAGGCAGTTTGATGG  197
      |   |||||||||||||| ||||| |||||||||||| |||||||||| |
seq2  A--TCTCTCACTGTATAGAAGACA-GTTATAGGAAAA-GCAGTTTGAT-G  119

seq1  CTGGAAGATGAAGTGGGCTCTCTGTAGCCGATAAGTATCACATTTGGCTT  247
      || ||||||||||||||||||||||||||||||||||||||| |||||||
seq2  CT-GAAGATGAAGTGGGCTCTCTGTAGCCGATAAGTATCACA-TTGGCTT  167

seq1  CCTCATAGTGCCAACTTATGTATGACCTTAGTTCACCCTTTGATAACTCT  297
      ||||||||||||||| ||||||||||||||||||||||||||||||||||
seq2  CCTCATAGTGCCAACCTATGTATGACCTTAGTTCACCCTTTGATAACTCT  217

seq1  TCTATTTAACATTCTTGACCATGACTCTGGCACTAAAGAATGGGAATAAA  347
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTATTTAACATTCTTGACCATGACTCTGGCACTAAAGAATGGGAATAAA  267

seq1  ATTCAGATTTGAAAACTTAAATTAAAACTTAAATCATGCATTTCCCAAGG  397
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTCAGATTTGAAAACTTAAATTAAAACTTAAATCATGCATTTCCCAAGG  317

seq1  ATATTTGAATCAATGACCAAGTCAATAGCTGCATACTTTATCCCAACTAT  447
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATTTGAATCAATGACCAAGTCAATAGCTGCATACTTTATCCCAACTAT  367

seq1  TAGTATAAAAAGTCTTTCAATTGTACGGAATAATTTGAGGAATAATTAAG  497
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGTATAAAAAGTCTTTCAATTGTACGGAATAATTTGAGGAATAATTAAG  417

seq1  TTAATTCTTTAAAGGTCTGGTTGAATTCTAGGATGAATCTATCTGTTGCT  547
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAATTCTTTAAAGGTCTGGTTGAATTCTAGGATGAATCTATCTGTTGCT  467

seq1  CTTTGGTTTTTGTTTTACTTGGAATATTTTTAATTACTGTAGCTTTCTCT  597
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTGGTTTTTGTTTTACTTGGAATATTTTTAATTACTGTAGCTTTCTCT  517

seq1  TGGCTATTATAAGTCTATTTATTTATCTACATT  630
      |||||||||||||||||||||||||||||||||
seq2  TGGCTATTATAAGTCTATTTATTTATCTACATT  550