BAC Information

Click to search

BAC

Clone NameB6Ng01-076N20
Chromosome6 (Build37)
Map Location 80,592,051 - 80,723,279
singlet/doubletdoublet
Overlap geneLOC100043390
Upstream geneLOC100043392, Lrrtm4
Downstream geneLOC100042991
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-076N20.bB6Ng01-076N20.g
ACCDH893006DH893007
length2631,141
definitionDH893006|Mus musculus domesticus DNA, BAC clone: B6Ng01-076N20, 5' end.DH893007|Mus musculus domesticus DNA, BAC clone: B6Ng01-076N20, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(80,723,017 - 80,723,279)(80,592,051 - 80,593,187)
sequence
ttgcgaaaataaaaacaactttagcttatcatccactcaagtttccacat
cagatctaagtcataaaccttgttgtgtcccagttttcctatgatattgt
tctttttcagactgtaatttggcttttgcctatctatgcatacaaaccta
gaggcagaccgaatatttaaaatgtaaattcccatatttagagaaatatg
ggaatgggagcagaagggagagaggaggaaggagagagagagagagagag
agagagagagaga
gaattcttactcccaaaccttgtttctgcattttttaaattctattttaa
aaaattatattaaggaatgagtttttaagcattcaaacttagtggatgta
tgttgcaaaaatattatttaaaaaaaaatctcagcctgaagttgctaacc
accatagaccatttaggttctcagatgaaagacacagccttatattctta
aatatgtcttagataacacaatagctgggcctaccctccaagttagaatc
taatactctatcaataacctaagtttttacttataatgtttcatctgggc
tgcttttagcactagtgggccagctcacatgtccacattgttatggatca
gctaacccatagtggactctcccttttactgtcctgtgtgttcctcctct
atttcatggccactccctctctccccttttctctgttccttcctctaagc
ccacctaaatttaacttcacctatttcacttctttccagctattggctgt
tagcatctttatttaccaatcacaaccaattgcagacaggatcactcagt
gtcttacatgtggagtttctcatctttggagaaaacagccatgggggaac
caaattagcattagaataaaaatatcattaggtcaattcactatatttct
tctttttttttgtccaattaaaagttctttttctctcagatataaattga
acacaattataacaattacttaaattataatatatgatatatatttttaa
attttagtctatcttatttgacaatttagataaagtttttatcatctatc
cttatttttaaagaatttacaattttgtatcttaattatgttttgatttt
agcttgcattaccatctgaaaaccatcctttcaaatctagaaaaatttca
acactaaacaacataagtttaattgtgagactataacaagtcttcaacta
caccagagattggagaaggaataatattattctgaatatgtaggaagtac
aaagacataactttccaaaacttaaacaattggcagaaacaattgaattg
cctggactgttcttcatatccttataaacatttgggggcatctattctta
gcagtttggcccgaatatcttgacagaccttaaatggagca
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr6_80723017_80723279
seq2: B6Ng01-076N20.b_50_312 (reverse)

seq1  TCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCCTTCCTCCTCTCTCCCTT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCCTTCCTCCTCTCTCCCTT  50

seq1  CTGCTCCCATTCCCATATTTCTCTAAATATGGGAATTTACATTTTAAATA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGCTCCCATTCCCATATTTCTCTAAATATGGGAATTTACATTTTAAATA  100

seq1  TTCGGTCTGCCTCTAGGTTTGTATGCATAGATAGGCAAAAGCCAAATTAC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCGGTCTGCCTCTAGGTTTGTATGCATAGATAGGCAAAAGCCAAATTAC  150

seq1  AGTCTGAAAAAGAACAATATCATAGGAAAACTGGGACACAACAAGGTTTA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTCTGAAAAAGAACAATATCATAGGAAAACTGGGACACAACAAGGTTTA  200

seq1  TGACTTAGATCTGATGTGGAAACTTGAGTGGATGATAAGCTAAAGTTGTT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGACTTAGATCTGATGTGGAAACTTGAGTGGATGATAAGCTAAAGTTGTT  250

seq1  TTTATTTTCGCAA  263
      |||||||||||||
seq2  TTTATTTTCGCAA  263

seq1: chr6_80592051_80593187
seq2: B6Ng01-076N20.g_68_1208

seq1  GAATTCTTACTCCCAAACCTTGTTTCTGCATTTTTTAAATTCTATTTTAA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTTACTCCCAAACCTTGTTTCTGCATTTTTTAAATTCTATTTTAA  50

seq1  AAAATTATATTAAGGAATGAGTTTTTAAGCATTCAAACTTAGTGGATGTA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAATTATATTAAGGAATGAGTTTTTAAGCATTCAAACTTAGTGGATGTA  100

seq1  TGTTGCAAAAATATTATTTAAAAAAAAATCTCAGCCTGAAGTTGCTAACC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTTGCAAAAATATTATTTAAAAAAAAATCTCAGCCTGAAGTTGCTAACC  150

seq1  ACCATAGACCATTTAGGTTCTCAGATGAAAGACACAGCCTTATATTCTTA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCATAGACCATTTAGGTTCTCAGATGAAAGACACAGCCTTATATTCTTA  200

seq1  AATATGTCTTAGATAACACAATAGCTGGGCCTACCCTCCAAGTTAGAATC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATATGTCTTAGATAACACAATAGCTGGGCCTACCCTCCAAGTTAGAATC  250

seq1  TAATACTCTATCAATAACCTAAGTTTTTACTTATAATGTTTCATCTGGGC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAATACTCTATCAATAACCTAAGTTTTTACTTATAATGTTTCATCTGGGC  300

seq1  TGCTTTTAGCACTAGTGGGCCAGCTCACATGTCCACATTGTTATGGATCA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCTTTTAGCACTAGTGGGCCAGCTCACATGTCCACATTGTTATGGATCA  350

seq1  GCTAACCCATAGTGGACTCTCCCTTTTACTGTCCTGTGTGTTCCTCCTCT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTAACCCATAGTGGACTCTCCCTTTTACTGTCCTGTGTGTTCCTCCTCT  400

seq1  ATTTCATGGCCACTCCCTCTCTCCCCTTTTCTCTGTTCCTTCCTCTAAGC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTCATGGCCACTCCCTCTCTCCCCTTTTCTCTGTTCCTTCCTCTAAGC  450

seq1  CCACCTAAATTTAACTTCACCTATTTCACTTCTTTCCAGCTATTGGCTGT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCACCTAAATTTAACTTCACCTATTTCACTTCTTTCCAGCTATTGGCTGT  500

seq1  TAGCATCTTTATTTACCAATCACAACCAATTGCAGACAGGATCACTCAGT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGCATCTTTATTTACCAATCACAACCAATTGCAGACAGGATCACTCAGT  550

seq1  GTCTTACATGTGGAGTTTCTCATCTTTGGAGAAAACAGCCATGGGGGAAC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCTTACATGTGGAGTTTCTCATCTTTGGAGAAAACAGCCATGGGGGAAC  600

seq1  CAAATTAGCATTAGAATAAAAATATCATTAGGTCAATTCACTATATTTCT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAATTAGCATTAGAATAAAAATATCATTAGGTCAATTCACTATATTTCT  650

seq1  TCTTTTTTTTTGTCCAATTAAAAGTTCTTTTTCTCTCAGATATAAATTGA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTTTTTTTTGTCCAATTAAAAGTTCTTTTTCTCTCAGATATAAATTGA  700

seq1  ACACAATTATAACAATTACTTAAATTATAATATATGATATATATTTTTAA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACACAATTATAACAATTACTTAAATTATAATATATGATATATATTTTTAA  750

seq1  ATTTTAGTCTATCTTATTTGACAATTTAGATAAAGTTTTTATCATCTATC  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTTAGTCTATCTTATTTGACAATTTAGATAAAGTTTTTATCATCTATC  800

seq1  CTTATTTTTAAAGAATTTACAATTTTGTATCTTAATTATG-TTTGATTTT  849
      |||||||||||||||||||||||||||||||||||||||| |||||||||
seq2  CTTATTTTTAAAGAATTTACAATTTTGTATCTTAATTATGTTTTGATTTT  850

seq1  AGCTTGCATTACCATCTGAAAACCATCCTTTCAAATCTAGAAAAATTTCA  899
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCTTGCATTACCATCTGAAAACCATCCTTTCAAATCTAGAAAAATTTCA  900

seq1  ACACTAAACAACATAAGTTTAATTGTGAGACTATAACAAGTCTTCAACTA  949
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACACTAAACAACATAAGTTTAATTGTGAGACTATAACAAGTCTTCAACTA  950

seq1  CACCAGAGATTGGAGAAGGAAATAAATATTA-TCTGAATATGTAAGAAGT  998
      |||||||||||||||||||||   ||||||| |||||||||||| |||||
seq2  CACCAGAGATTGGAGAAGGAA--TAATATTATTCTGAATATGTAGGAAGT  998

seq1  ACAAAGACATAAC-TTCCAAAACTTAAACAATTGGCAGAAACAATTG-AT  1046
      ||||||||||||| ||||||||||||||||||||||||||||||||| ||
seq2  ACAAAGACATAACTTTCCAAAACTTAAACAATTGGCAGAAACAATTGAAT  1048

seq1  TGCCTGGACTG-TCTCCAATATTCCTTAT-AACATT--GGGGCATCTATC  1092
      ||||||||||| ||| | ||| ||||||| ||||||  ||||||||||| 
seq2  TGCCTGGACTGTTCTTC-ATA-TCCTTATAAACATTTGGGGGCATCTATT  1096

seq1  TTTAGCAGTTTGGCCCAGAATATC-TGACAGACCTTAAATGAAGCA  1137
       ||||||||||||||| ||||||| |||||||||||||||| ||||
seq2  CTTAGCAGTTTGGCCC-GAATATCTTGACAGACCTTAAATGGAGCA  1141