BAC Information

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BAC

Clone NameB6Ng01-077A01
Chromosome6 (Build37)
Map Location 61,708,983 - 61,838,296
singlet/doubletdoublet
Overlap geneC130092O11Rik
Upstream geneSnca, ENSMUSG00000064018, Mmrn1, LOC100041756, LOC100041764, LOC100042694
Downstream genenone
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-077A01.bB6Ng01-077A01.g
ACCDH893095DH893096
length8371,082
definitionDH893095|Mus musculus domesticus DNA, BAC clone: B6Ng01-077A01, 5' end.DH893096|Mus musculus domesticus DNA, BAC clone: B6Ng01-077A01, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(61,708,983 - 61,709,819)(61,837,210 - 61,838,296)
sequence
gaattccttctcttacaatctttaatgatgttttctgaacgttgagtgtg
ggaggaatattgtaaatgtaacagttggggctgggtatccatggtcagat
gttctttcatggctttctgtaatgacttccttccattgtaaaactaataa
aataaacttctttggtaaggagtgagttctacaattactcgtggctctaa
aaataagtatttagaatgcagtttggaagtgtactggtttaagaaacgct
ctctctctctctctctctctctctgtgtgtgtgtgtgtgtgtgtgtgtgt
gaccacatatgaaagtcagaagaaaatgtatgagatatgtttttctcctt
ctactctgtgggtccatagatgaaactcagtttccggccttgaggcaagc
agctataagcacagagcccttagtccagttttcatagcacatcagcaggt
agctgaaattctgacaagagaaaagttaaatagatgaataatttattgac
aagagattaggtactcagagcatatgtcatctttgaactcaattggactc
tataagaatttttgtgaagttgatttttggtatttattaagagactctag
aggtttttagtgtaaattatatgtcagcaattagcaagttatcatgtgta
tttaaagtgtctgagctgaaagtactttctcaagatgagtgataattctg
aaaatcagagacctcatgccatatggttcctcttttcgatgaaagtcagt
tactttataatgaaaccttttagtaaggattactgctgcatcccatataa
attgaaatccttcactttttcttgagagtggaggtga
gaattcaaatggcttactactttgttgtagtgtgaatttcttagaactta
ctttgttaaaaataaagcaatgcactgtactgtaaaatatttaaagtatg
aaatatgaaagtagaaaagaattttccctgaagattccttatgcccccaa
ccttcacaacacagaattaaattgaaagcttaaaatgaatttttccagat
gtttacagattgtcttctttccctggattgtgataaccctcacacttgct
tttagctgcagtataatttaatgcaggcacctgtcagaaactgtcaatca
caatccctgcctgactgaccattaaaatgtcttaaatcagaaaaatgccc
ttttcccttatattaccaatggaaagaactcactagatgctcagtttaga
gtaacaaaatttatggtgaattatctgtgggaaattgttccttttgtttc
tcagatattttaaattttcttttgattaagccaccctgagaaacgcacat
atttcaatgataatgagctcctgtagagtcggcttgcagggctgggctat
atcatgatacccttcactttgataggaggaagtagcctgctgcatcgtgc
attcattctaagagtatcatctaccacattaagataaatcatttttttat
cttctaaatgaggccaaaggtgcctggctattttctggacctagttctgg
aaataaatatatttctcttaaagaatttgtctccctcaccccctttatgt
gtggctctagtgcttttgggtagagtgccatgtgcctaaataaagctctg
ccttatggtttaaagtgagcttagaagcacttgtagcgtacaccctgact
tgtgatgaagagctcatggtattttgctatatgctaaatggagtctttat
tttatctcctttttgttcaagctttttcctcagggctcactgcttttttc
ttacatggctgctagtatgtttatttcatatatatttttaaaagacattt
aacagtttctgtacatggtgcacatgcacatatctacataatctatgttg
tttggcgggtatactgaagaatgtcagttggg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr6_61708983_61709819
seq2: B6Ng01-077A01.b_50_886

seq1  GAATTCCTTCTCTTACAATCTTTAATGATGTTTTCTGAACGTTGAGTGTG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCTTCTCTTACAATCTTTAATGATGTTTTCTGAACGTTGAGTGTG  50

seq1  GGAGGAATATTGTAAATGTAACAGTTGGGGCTGGGTATCCATGGTCAGAT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAGGAATATTGTAAATGTAACAGTTGGGGCTGGGTATCCATGGTCAGAT  100

seq1  GTTCTTTCATGGCTTTCTGTAATGACTTCCTTCCATTGTAAAACTAATAA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTCTTTCATGGCTTTCTGTAATGACTTCCTTCCATTGTAAAACTAATAA  150

seq1  AATAAACTTCTTTGGTAAGGAGTGAGTTCTACAATTACTCGTGGCTCTAA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATAAACTTCTTTGGTAAGGAGTGAGTTCTACAATTACTCGTGGCTCTAA  200

seq1  AAATAAGTATTTAGAATGCAGTTTGGAAGTGTACTGGTTTAAGAAACGCT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATAAGTATTTAGAATGCAGTTTGGAAGTGTACTGGTTTAAGAAACGCT  250

seq1  CTCTCTCTCTCTCTCTCTCTCTCTGTGTGTGTGTGTGTGTGTGTGTGTGT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTCTCTCTCTCTCTCTCTCTCTGTGTGTGTGTGTGTGTGTGTGTGTGT  300

seq1  GACCACATATGAAAGTCAGAAGAAAATGTATGAGATATGTTTTTCTCCTT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACCACATATGAAAGTCAGAAGAAAATGTATGAGATATGTTTTTCTCCTT  350

seq1  CTACTCTGTGGGTCCATAGATGAAACTCAGTTTCCGGCCTTGAGGCAAGC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTACTCTGTGGGTCCATAGATGAAACTCAGTTTCCGGCCTTGAGGCAAGC  400

seq1  AGCTATAAGCACAGAGCCCTTAGTCCAGTTTTCATAGCACATCAGCAGGT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCTATAAGCACAGAGCCCTTAGTCCAGTTTTCATAGCACATCAGCAGGT  450

seq1  AGCTGAAATTCTGACAAGAGAAAAGTTAAATAGATGAATAATTTATTGAC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCTGAAATTCTGACAAGAGAAAAGTTAAATAGATGAATAATTTATTGAC  500

seq1  AAGAGATTAGGTACTCAGAGCATATGTCATCTTTGAACTCAATTGGACTC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGAGATTAGGTACTCAGAGCATATGTCATCTTTGAACTCAATTGGACTC  550

seq1  TATAAGAATTTTTGTGAAGTTGA-TTTTGGTATTTATTAAGAGACTCTAG  599
      ||||||||||||||||||||||| ||||||||||||||||||||||||||
seq2  TATAAGAATTTTTGTGAAGTTGATTTTTGGTATTTATTAAGAGACTCTAG  600

seq1  AGGTTTTTAGTGTAAATTATATGTCAGCAATTAGCAAGTTATCATGTGTA  649
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGTTTTTAGTGTAAATTATATGTCAGCAATTAGCAAGTTATCATGTGTA  650

seq1  TTTAAAGTGTCTGAGCTGAAAGTACTTTCTCAAGATGAGTGATAATTCTG  699
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTAAAGTGTCTGAGCTGAAAGTACTTTCTCAAGATGAGTGATAATTCTG  700

seq1  AAAATCAGAGACCTCATGCCATATGGTTCCTCTTTTCGAATGAAAGTCAG  749
      |||||||||||||||||||||||||||||||||||||| |||||||||||
seq2  AAAATCAGAGACCTCATGCCATATGGTTCCTCTTTTCG-ATGAAAGTCAG  749

seq1  TTACTTTATAATGAAACCTTTTAGTAAGGATTACTGCTGCATCCCATATA  799
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTACTTTATAATGAAACCTTTTAGTAAGGATTACTGCTGCATCCCATATA  799

seq1  AATTGAAATCCTTCACTTTTTCTTGAGAGTGGAGGTGA  837
      ||||||||||||||||||||||||||||||||||||||
seq2  AATTGAAATCCTTCACTTTTTCTTGAGAGTGGAGGTGA  837

seq1: chr6_61837210_61838296
seq2: B6Ng01-077A01.g_65_1146 (reverse)

seq1  CCCAACCTGACATTCCTTCAGGTTTATAACCCGCCAAAC-ACATAGA-TA  48
      ||||| |||||||| ||||||   ||| ||||||||||| ||||||| ||
seq2  CCCAA-CTGACATT-CTTCAG---TAT-ACCCGCCAAACAACATAGATTA  44

seq1  TGTAGATATGTGCATGTGCA-CATGTACAGAAAACTTGTTAAATGTCTTT  97
      |||||||||||||||||||| ||||||||||||   ||||||||||||||
seq2  TGTAGATATGTGCATGTGCACCATGTACAGAAA--CTGTTAAATGTCTTT  92

seq1  TAAAAATATATATGAAATAAACAATACTAGCAGCCATGTAAGAAAAAAGC  147
      |||||||||||||||||||||| |||||||||||||||||||||||||||
seq2  TAAAAATATATATGAAATAAAC-ATACTAGCAGCCATGTAAGAAAAAAGC  141

seq1  AGTGAGCCCTGAGGAAAAAGCTTGAACAAAAAGGAGATAAAATAAAGACT  197
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTGAGCCCTGAGGAAAAAGCTTGAACAAAAAGGAGATAAAATAAAGACT  191

seq1  CCATTTAGCATATAGCAAAATACCATGAGCTCTTCATCAC-AGTCAGGGT  246
      |||||||||||||||||||||||||||||||||||||||| |||||||||
seq2  CCATTTAGCATATAGCAAAATACCATGAGCTCTTCATCACAAGTCAGGGT  241

seq1  GTACGCTACAAGTGCTTCTAAGCTCACTTTAAACCATAAGGCAGAGCTTT  296
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTACGCTACAAGTGCTTCTAAGCTCACTTTAAACCATAAGGCAGAGCTTT  291

seq1  ATTTAGGCACATGGCACTCTACCCAAAAGCACTAGAGCCACACATAAAGG  346
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTAGGCACATGGCACTCTACCCAAAAGCACTAGAGCCACACATAAAGG  341

seq1  GGGTGAGGGAGACAAATTCTTTAAGAGAAATATATTTATTTCCAGAACTA  396
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGTGAGGGAGACAAATTCTTTAAGAGAAATATATTTATTTCCAGAACTA  391

seq1  GGTCCAGAAAATAGCCAGGCACCTTTGGCCTCATTTAGAAGATAAAAAAA  446
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTCCAGAAAATAGCCAGGCACCTTTGGCCTCATTTAGAAGATAAAAAAA  441

seq1  TGATTTATCTTAATGTGGTAGATGATACTCTTAGAATGAATGCACGATGC  496
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGATTTATCTTAATGTGGTAGATGATACTCTTAGAATGAATGCACGATGC  491

seq1  AGCAGGCTACTTCCTCCTATCAAAGTGAAGGGTATCATGATATAGCCCAG  546
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCAGGCTACTTCCTCCTATCAAAGTGAAGGGTATCATGATATAGCCCAG  541

seq1  CCCTGCAAGCCGACTCTACAGGAGCTCATTATCATTGAAATATGTGCGTT  596
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCTGCAAGCCGACTCTACAGGAGCTCATTATCATTGAAATATGTGCGTT  591

seq1  TCTCAGGGTGGCTTAATCAAAAGAAAATTTAAAATATCTGAGAAACAAAA  646
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTCAGGGTGGCTTAATCAAAAGAAAATTTAAAATATCTGAGAAACAAAA  641

seq1  GGAACAATTTCCCACAGATAATTCACCATAAATTTTGTTACTCTAAACTG  696
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAACAATTTCCCACAGATAATTCACCATAAATTTTGTTACTCTAAACTG  691

seq1  AGCATCTAGTGAGTTCTTTCCATTGGTAATATAAGGGAAAAGGGCATTTT  746
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCATCTAGTGAGTTCTTTCCATTGGTAATATAAGGGAAAAGGGCATTTT  741

seq1  TCTGATTTAAGACATTTTAATGGTCAGTCAGGCAGGGATTGTGATTGACA  796
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGATTTAAGACATTTTAATGGTCAGTCAGGCAGGGATTGTGATTGACA  791

seq1  GTTTCTGACAGGTGCCTGCATTAAATTATACTGCAGCTAAAAGCAAGTGT  846
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTTCTGACAGGTGCCTGCATTAAATTATACTGCAGCTAAAAGCAAGTGT  841

seq1  GAGGGTTATCACAATCCAGGGAAAGAAGACAATCTGTAAACATCTGGAAA  896
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGGGTTATCACAATCCAGGGAAAGAAGACAATCTGTAAACATCTGGAAA  891

seq1  AATTCATTTTAAGCTTTCAATTTAATTCTGTGTTGTGAAGGTTGGGGGCA  946
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTCATTTTAAGCTTTCAATTTAATTCTGTGTTGTGAAGGTTGGGGGCA  941

seq1  TAAGGAATCTTCAGGGAAAATTCTTTTCTACTTTCATATTTCATACTTTA  996
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAGGAATCTTCAGGGAAAATTCTTTTCTACTTTCATATTTCATACTTTA  991

seq1  AATATTTTACAGTACAGTGCATTGCTTTATTTTTAACAAAGTAAGTTCTA  1046
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATATTTTACAGTACAGTGCATTGCTTTATTTTTAACAAAGTAAGTTCTA  1041

seq1  AGAAATTCACACTACAACAAAGTAGTAAGCCATTTGAATTC  1087
      |||||||||||||||||||||||||||||||||||||||||
seq2  AGAAATTCACACTACAACAAAGTAGTAAGCCATTTGAATTC  1082