BAC Information

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BAC

Clone NameB6Ng01-077C09
Chromosome6 (Build37)1 (Build37)
Map Location 18,835,442 - 18,835,96823,994,648 - 23,995,794
singlet/doubletsingletsinglet
Overlap genenone
Upstream geneSt7, Wnt2, Asz1, LOC386426, LOC636450, LOC100040751, Cftr, Cttnbp2, EG545829, Lsm8, Ankrd7
Downstream geneLOC626180, Eif3s6-ps4
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-077C09.bB6Ng01-077C09.g
ACCDH893201DH893202
length9421,131
definitionDH893201|Mus musculus domesticus DNA, BAC clone: B6Ng01-077C09, 5' end.DH893202|Mus musculus domesticus DNA, BAC clone: B6Ng01-077C09, 3' end.
singlet/doubletsingletsinglet
BLAST hituniqueunique
Map location.(18,835,442 - 18,835,968)(23,994,648 - 23,995,794)
sequence
gaattctttgttcagttctgagccccattttttaatggggttgtttgatt
ttctgaagtccaccttcttgagttctttatatatgttggatattagtccc
ctatctgatttaggataggtaaagatcctttcccaatctgttggtggtct
ctttgtcttattgacggtgtcttttgccttgcagaaactttggagtttca
ttaggtcccatttgtcaattctcgatcttacagcacaagccattgctgtt
ctgttcaggaatttttcccctgtgcccatatcttcaaggcttttccccac
tttctcctctataagtttcagtgtctctggttttatgtgaagttctttga
tccatttagatttgaccttagtacaaggagataagtatggatcgattcgc
attcttctacatgataacaaccagttgtgccagcaccatttgttgaaaat
gctgtctttcttccactggatggttttagctcccttgtcgaagatcaagt
gaccataggtgtgtgggttcatttctgggtcttcaattctattccattgg
tctacttgtctgtctctataccagtaccatgcagtttttaccacaattgt
tctgtagtaaagctttaggtcaggcatggtgattccaccagaggttcttt
tatccttgagaagagtttttgctatcctaggttttttgttattccagatg
aatttgcaaattgctccttctaattcattgaagaattgagttggaatttt
gatggggattgcattgaatctgtagattgcttttggcaagatagccattt
ttacaatattgatcctgccaatccatgagcatgggagatctttccatctt
ctgagatcttctttaatttctttctcagagacttgaagttcttatcatac
agatctttcacttccttagttagagtcacgccgagatatttt
gaattcactctgaagtaataggtagtaggactccatttattttaactcag
aatggcatgagccttttcagaatggcattttttcagagggaattttgtat
atacatacacacaagtacacacacacacacacagactcaggttagaatgt
ggtggatctaggctaggtagaacacagcacttaaaagctaacccgaatat
ttatctagagacaaggtcaaggctgcagtgatagcaacttgaattagttt
tcatttttgcatgggaaattaacatcacacagcaagataaattaatgttt
ccacaagcaaaatggaaccaagctgctcttccaggcctcacctggctgaa
atcaaagtgttggatgggctgtgaccttagccgaggcttagaatccttta
caaccttaaagaggttggcagcgacatcaggggcggagggaagtacatct
ccagcttttcgttggcagctccccgaggagttcctgtcatcttttaggcg
tctgaacccagagaaatcaagattaatcacttctccacacaaaataattt
caagaccaaccagtatgagtttatctttatttttatttttaaagatttat
ttattattacatgtaagtacactgtagctgtcttcagacactccagaaga
gggaatcagatctcattatgagatggttgtgagccaccatgtggttgctg
ggatttgaactcaggaccgttggaagaacagtcagtatacttaaccgctg
agccatctcaccagcctgagtgggagtttattaaagacattagtaaaaga
acatgctttcagatttgttgttacaagttcaataataggtactattatat
tctggtccttggttagcatagcagcagatttcaaaataaataaaaaagct
gggcataacttagttcatggaagtagtaaataagaaaagatacccaggtt
tatgtcttaaacctaaagcattggcttatgactgtattgagttctgcagg
acctgaaattacttaaattgtgattgctacaaatagcatatgctttgtgc
tacattttctacaataactgtccttggaattatgaatgtaatttgggttc
ctagaaacagatggcagaaggatgaaactga
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr6_18835442_18835968
seq2: B6Ng01-077C09.b_44_571 (reverse)

seq1  CCAGAGATGAACCCACACACCTATGGTCACTTGATCTTCGACAAGGGAGC  50
      ||||| ||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAGAAATGAACCCACACACCTATGGTCACTTGATCTTCGACAAGGGAGC  50

seq1  TAAAACCATCCAGTGGAAGAAAGACAGCATTTTCAACAATTGGTGCTGGC  100
      ||||||||||||||||||||||||||||||||||||||| ||||||||||
seq2  TAAAACCATCCAGTGGAAGAAAGACAGCATTTTCAACAAATGGTGCTGGC  100

seq1  ACAACTGGTTGTTATCTTGTAGAAGAATGTGAATCGATCCATACTTATCT  150
      |||||||||||||||| |||||||||||| ||||||||||||||||||||
seq2  ACAACTGGTTGTTATCATGTAGAAGAATGCGAATCGATCCATACTTATCT  150

seq1  CCATGTACTAAGGTCAAATCTAAGTGGATCAAGGAACTTCACATAAAACC  200
      || |||||||||||||||||||| |||||||| |||||||||||||||||
seq2  CCTTGTACTAAGGTCAAATCTAAATGGATCAAAGAACTTCACATAAAACC  200

seq1  AGAGACACTGAAACTTATAGAGGAGAAAGTGGGGAAAAGCCTTGAAGATA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGACACTGAAACTTATAGAGGAGAAAGTGGGGAAAAGCCTTGAAGATA  250

seq1  TGGGCAGAGGGGAAAAGTTCCTGAACAGAACAGCAATGGC-TGTGCTGTG  299
      |||||| ||||||||| ||||||||||||||||||||||| |||||||| 
seq2  TGGGCACAGGGGAAAAATTCCTGAACAGAACAGCAATGGCTTGTGCTGTA  300

seq1  AGGTAGAGAATCGACAAATGGGACCTAATGAAACTCCAAAGTTTCTGCAA  349
      || | |||||| ||||||||||||||||||||||||||||||||||||||
seq2  AGATCGAGAATTGACAAATGGGACCTAATGAAACTCCAAAGTTTCTGCAA  350

seq1  GGCAAAAGACACCGTCAATAAGACAAAAAGACCACCAACAGATTGGGAAA  399
      ||||||||||||||||||||||||||| ||||||||||||||||||||||
seq2  GGCAAAAGACACCGTCAATAAGACAAAGAGACCACCAACAGATTGGGAAA  400

seq1  GGATCTTTACCTATCCTAAATCAGATAGGGGACTAATATCCAACATATAT  449
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGATCTTTACCTATCCTAAATCAGATAGGGGACTAATATCCAACATATAT  450

seq1  AAAGAACTCAAGAAGGTGGACTTCAGAAAATCAAATAACCCCATTAATAA  499
      ||||||||||||||||||||||||||||||||||| ||||||||||| ||
seq2  AAAGAACTCAAGAAGGTGGACTTCAGAAAATCAAACAACCCCATTAAAAA  500

seq1  ATGGGGCTCAGAACTGAACAAAGAATTC  527
      ||||||||||||||||||||||||||||
seq2  ATGGGGCTCAGAACTGAACAAAGAATTC  528

seq1: chr1_23994648_23995794
seq2: B6Ng01-077C09.g_70_1200

seq1  GAATTCACTCTGAAGTAATAGGTAGTAGGACTCCATTTATTTTAACTCAG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCACTCTGAAGTAATAGGTAGTAGGACTCCATTTATTTTAACTCAG  50

seq1  AATGGCATGAGCCTTTTCAGAATGGCATTTTTTCAGAGGGAATTTTGTAT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATGGCATGAGCCTTTTCAGAATGGCATTTTTTCAGAGGGAATTTTGTAT  100

seq1  ATACATACACACAAGTACACACACACACACACAGACTCAGGTTAGAATGT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATACATACACACAAGTACACACACACACACACAGACTCAGGTTAGAATGT  150

seq1  GGTGGATCTAGGCTAGGTAGAACACAGCACTTAAAAGCTAACCCGAATAT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTGGATCTAGGCTAGGTAGAACACAGCACTTAAAAGCTAACCCGAATAT  200

seq1  TTATCTAGAGACAAGGTCAAGGCTGCAGTGATAGCAACTTGAATTAGTTT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTATCTAGAGACAAGGTCAAGGCTGCAGTGATAGCAACTTGAATTAGTTT  250

seq1  TCATTTTTGCATGGGAAATTAACATCACACAGCAAGATAAATTAATGTTT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCATTTTTGCATGGGAAATTAACATCACACAGCAAGATAAATTAATGTTT  300

seq1  CCACAAGCAAAATGGAACCAAGCTGCTCTTCCAGGCCTCACCTGGCTGAA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCACAAGCAAAATGGAACCAAGCTGCTCTTCCAGGCCTCACCTGGCTGAA  350

seq1  ATCAAAGTGTTGGATGGGCTGTGACCTTAGCCGAGGCTTAGAATCCTTTA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCAAAGTGTTGGATGGGCTGTGACCTTAGCCGAGGCTTAGAATCCTTTA  400

seq1  CAACCTTAAAGAGGTTGGCAGCGACATCAGGGGCGGAGGGAAGTACATCT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAACCTTAAAGAGGTTGGCAGCGACATCAGGGGCGGAGGGAAGTACATCT  450

seq1  CCAGCTTTTCGTTGGCAGCTCCCCGAGGAGTTCCTGTCATCTTTTAGGCG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAGCTTTTCGTTGGCAGCTCCCCGAGGAGTTCCTGTCATCTTTTAGGCG  500

seq1  TCTGAACCCAGAGAAATCAAGATTAATCACTTCTCCACACAAAATAATTT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGAACCCAGAGAAATCAAGATTAATCACTTCTCCACACAAAATAATTT  550

seq1  CAAGACCAACCAGTATGAGTTTATCTTTATTTTTATTTTTAAAGATTTAT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAGACCAACCAGTATGAGTTTATCTTTATTTTTATTTTTAAAGATTTAT  600

seq1  TTATTATTACATGTAAGTACACTGTAGCTGTCTTCAGACACTCCAGAAGA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTATTATTACATGTAAGTACACTGTAGCTGTCTTCAGACACTCCAGAAGA  650

seq1  GGGAATCAGATCTCATTATGAGATGGTTGTGAGCCACCATGTGGTTGCTG  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGAATCAGATCTCATTATGAGATGGTTGTGAGCCACCATGTGGTTGCTG  700

seq1  GGATTTGAACTCAGGACCGTTGGAAGAACAGTCAGTATACTTAACCGCTG  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGATTTGAACTCAGGACCGTTGGAAGAACAGTCAGTATACTTAACCGCTG  750

seq1  AGCCATCTCACCAGCCTGAGTTGGAGTTTATTAAAGACATTAGTAAAAGA  800
      ||||||||||||||||||||| ||||||||||||||||||||||||||||
seq2  AGCCATCTCACCAGCCTGAGTGGGAGTTTATTAAAGACATTAGTAAAAGA  800

seq1  ACATGCTTTCAGATTTGTTGTTACAAGTTCAATAATAGGTACTATTATAT  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACATGCTTTCAGATTTGTTGTTACAAGTTCAATAATAGGTACTATTATAT  850

seq1  TCTGGTCCTTGGTTAGCATAGCAGCAGATTTCAAAATAAATAAAAAAGCT  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGGTCCTTGGTTAGCATAGCAGCAGATTTCAAAATAAATAAAAAAGCT  900

seq1  GGGCATAACTTAGTTCAATGGAAGTAGTAAATAAGAAAAGATACCCAGGT  950
      |||||||||||||||| |||||||||||||||||||||||||||||||||
seq2  GGGCATAACTTAGTTC-ATGGAAGTAGTAAATAAGAAAAGATACCCAGGT  949

seq1  TTATGTCTTAAACCTAAAGCATTGGCTTATGACTGTATTGAGGTCCTGCA  1000
      ||||||||||||||||||||||||||||||||||||||||| || |||||
seq2  TTATGTCTTAAACCTAAAGCATTGGCTTATGACTGTATTGA-GTTCTGCA  998

seq1  AGGAACCTGAAATTACTTAAATTGTGATTTTGCTACAAATAGCCATATGC  1050
        | |||||||||||||||||||||||  ||||||||||||| |||||||
seq2  --GGACCTGAAATTACTTAAATTGTGA--TTGCTACAAATAG-CATATGC  1043

seq1  TTTGTGCTACATTTTCTACTATAAACTGTTCTTTGTAATTTATGAATGTT  1100
      ||||||||||||||||||| || |||||| ||| |  | ||||||||| |
seq2  TTTGTGCTACATTTTCTACAAT-AACTGTCCTTGG--AATTATGAATG-T  1089

seq1  AATTTGGGTTCTCTAAGAAACAGATGGCAAGACAGGATGAAAACTGA  1147
      ||||||||||| || ||||||||||||| ||| |||||| |||||||
seq2  AATTTGGGTTC-CT-AGAAACAGATGGC-AGA-AGGATG-AAACTGA  1131