BAC Information

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BAC

Clone NameB6Ng01-077F13
Chromosome6 (Build37)
Map Location 30,429,113 - 30,590,904
singlet/doubletdoublet
Overlap gene2700094F01Rik, 1700025E21Rik, Cpa2, Cpa4, Cpa5, Cpa1
Upstream geneCrim2, Irf5, Tnpo3, Tspan33, Smo, 4631427C17Rik, D330017J20Rik, 1700023L04Rik, 1700080G18Rik, Nrf1, Ube2h, Zc3hc1, 2410127E18Rik
Downstream geneTsga14, Mest, Copg2, Copg2, Tsga13, Klf14, LOC100038973, AB041803, Mkln1, Podxl, EG619959
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-077F13.bB6Ng01-077F13.g
ACCDH893348DH893349
length9381,117
definitionDH893348|Mus musculus domesticus DNA, BAC clone: B6Ng01-077F13, 5' end.DH893349|Mus musculus domesticus DNA, BAC clone: B6Ng01-077F13, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(30,589,965 - 30,590,904)(30,429,113 - 30,430,251)
sequence
gaattcatagatctgagatcagaggaagaaaggggactgatggcttctgc
caatacaggtgtctcctacccacagccagaccagccttggccctggtctg
tattctgccaagcatggagaaaagtacggtgttgtgggaagaatctttcg
gggtggccctcacctcatccagagtatggtaggtggcataattgaaagca
tcggtggacagagccctggcctggaaggcggacatctgctgcttctcctc
gtcgagcagagactgcacatcttcgatcatgatctcatagctaatatcat
gatattccaagaatgctttcacggactggatggtggggaagggcactcga
acatcgatggggagaccagcccgggcagggtcccgccagaagtccaacta
ggaaacacagacgccagaaccatttcagtgggctagaggcaccaactggg
gcagcagagtgggagggccggggaagcggtatcggcactagaagctccca
cgtggctggagttgaggagtgggtgctggaagcagaggaagagtggggga
gcttgggaactggacaaattccaggatgggcaggaaatggccagaatgga
gagggttggaggagcaaggcagacaggaagcgggaaagggtcctagtatg
tcatcggattctcaggggtactaagatctgagtctggggtctgaagtcat
ttcccagccactctgtctcatggctctttgccaggaggctgggccagagc
ctagagaccaactaggtggttatgggagttggtcccagatggcctaggaa
gtctcccggatcgtcaggaaccctgcacggagtctctaaccttcaagtgc
tccaactcctccagctccctcactttctgcacctgggcttcgtcagtggc
agagattcggagaacctggtgctgggcagaggggggga
gaattcactgtgtaggacaggttggcctcaaaccacagccctagcaatag
cactgggattaaaggcatgtggcacgagagaggcttaactttcatcttta
aacttcctccacataatgcatggaattattccatgtgggccgctaggaaa
tctctttggggccaatgctgtccttggtggtgtacttgggcaacacccac
ccatcttgcttggtcctctctcttcttcctcactccaaggaatccatcac
gagccctcattcagggtggaaagaaatagaatcactgttatctcctgaga
tgcagctccggcctgatatgtaaccatcctagacttggtaggaagctact
cagtgacccatggcagtgttactgggccctggttgtgccttcctgtccta
ggtggtcagacaagatgtccttccctgaagccttccttcgaaagagcctg
ctaatgctcagactttgacatattccagagaagggcagccagcctctgtt
gggttgtcgctgctctggctacactccaggttgctgaggaaggcctgcag
agtacatgggattggtcctggggtattggtaaacaacttaactttctcag
cagtactgtggcaggtggagttctgaaacactccagcactaagaaggcca
gtgtgcctcactggctcaccttccccagagggtgtcctatccataaatgg
gtatccctgaatagcagtatcctcagctcacgctgctcacctgcaggcct
gtgttaagatgagctactcatccatttccaaatctgttggtagggaggct
gattgccaaaggacacaggtttcattttctggagaaaacgctggctatct
ggcatggttaggacccaggcagcaagtttaatcagagtgagtctcacgga
gggaggaccatgtaactggagcattcccagagactgcagaggatgagcag
agaagtcacagcagagcggctacatcaagatttgggtgcagaagccagct
ggggcagatgtggaggtcttaatgtcaggcttaggattatcaagggaatg
aacaatcaaacagtgtttcagaagataattgagagaatttacagatgatt
gggaaatctgtagcatg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr6_30589965_30590904
seq2: B6Ng01-077F13.b_47_984 (reverse)

seq1  TCCCCCCCTCTGCCCAGGCACCAGGTTCTCCGAATCTCTGCCACCGACGA  50
      |||||||||||||||| ||||||||||||||||||||||||||| |||||
seq2  TCCCCCCCTCTGCCCA-GCACCAGGTTCTCCGAATCTCTGCCACTGACGA  49

seq1  AGCCCAGGTGCAGAAAGTGAGGGAGCTGGAGGAGTTGGAGCACTTGAAGG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCCCAGGTGCAGAAAGTGAGGGAGCTGGAGGAGTTGGAGCACTTGAAGG  99

seq1  TTAGAGACTCCGTGCAGGGTTCCCTGACGATCCGGGAGACTTCCTAGGCC  150
      ||||||||||||||||||||| ||||||||||||||||||||||||||||
seq2  TTAGAGACTCCGTGCAGGGTT-CCTGACGATCCGGGAGACTTCCTAGGCC  148

seq1  ATCTGGGACCAACTCCCATAACCACCTAGTTGGTCTCTAGGCTCTGGCCC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCTGGGACCAACTCCCATAACCACCTAGTTGGTCTCTAGGCTCTGGCCC  198

seq1  AGCCTCCTGGCAAAGAGCCATGAGACAGAGTGGCTGGGAAATGACTTCAG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCCTCCTGGCAAAGAGCCATGAGACAGAGTGGCTGGGAAATGACTTCAG  248

seq1  ACCCCAGACTCAGATCTTAGTACCCCTGAGAATCCGATGACATACTAGGA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCCCAGACTCAGATCTTAGTACCCCTGAGAATCCGATGACATACTAGGA  298

seq1  CCCTTTCCCGCTTCCTGTCTGCCTTGCTCCTCCAACCCTCTCCATTCTGG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCTTTCCCGCTTCCTGTCTGCCTTGCTCCTCCAACCCTCTCCATTCTGG  348

seq1  CCATTTCCTGCCCATCCTGGAATTTGTCCAGTTCCCAAGCTCCCCCACTC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCATTTCCTGCCCATCCTGGAATTTGTCCAGTTCCCAAGCTCCCCCACTC  398

seq1  TTCCTCTGCTTCCAGCACCCACTCCTCAACTCCAGCCACGTGGGAGCTTC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCCTCTGCTTCCAGCACCCACTCCTCAACTCCAGCCACGTGGGAGCTTC  448

seq1  TAGTGCCGATACCGCTTCCCCGGCCCTCCCACTCTGCTGCCCCAGTTGGT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGTGCCGATACCGCTTCCCCGGCCCTCCCACTCTGCTGCCCCAGTTGGT  498

seq1  GCCTCTAGCCCACTGAAATGGTTCTGGCGTCTGTGTTTCCTAGTTGGACT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCTCTAGCCCACTGAAATGGTTCTGGCGTCTGTGTTTCCTAGTTGGACT  548

seq1  TCTGGCGGGACCCTGCCCGGGCTGGTCTCCCCATCGATGTTCGAGTGCCC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGGCGGGACCCTGCCCGGGCTGGTCTCCCCATCGATGTTCGAGTGCCC  598

seq1  TTCCCCACCATCCAGTCCGTGAAAGCATTCTTGGAATATCATGATATTAG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCCCCACCATCCAGTCCGTGAAAGCATTCTTGGAATATCATGATATTAG  648

seq1  CTATGAGATCATGATCGAAGATGTGCAGTCTCTGCTCGACGAGGAGAAGC  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTATGAGATCATGATCGAAGATGTGCAGTCTCTGCTCGACGAGGAGAAGC  698

seq1  AGCAGATGTCCGCCTTCCAGGCCAGGGCTCTGTCCACCGATGCTTTCAAT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCAGATGTCCGCCTTCCAGGCCAGGGCTCTGTCCACCGATGCTTTCAAT  748

seq1  TATGCCACCTACCATACTCTGGATGAGGTGAGGGCCACCCCGAAAGATTC  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATGCCACCTACCATACTCTGGATGAGGTGAGGGCCACCCCGAAAGATTC  798

seq1  TTCCCACAACACCGTACTTTTCTCCATGCTTGGCAGAATACAGACCAGGG  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCCCACAACACCGTACTTTTCTCCATGCTTGGCAGAATACAGACCAGGG  848

seq1  CCAAGGCTGGTCTGGCTGTGGGTAGGAGACACCTGTATTGGCAGAAGCCA  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAAGGCTGGTCTGGCTGTGGGTAGGAGACACCTGTATTGGCAGAAGCCA  898

seq1  TCAGTCCCCTTTCTTCCTCTGATCTCAGATCTATGAATTC  940
      ||||||||||||||||||||||||||||||||||||||||
seq2  TCAGTCCCCTTTCTTCCTCTGATCTCAGATCTATGAATTC  938

seq1: chr6_30429113_30430251
seq2: B6Ng01-077F13.g_68_1184

seq1  GAATTCACTGTGTAGGACAGGTTGGCCTCAAACCACAGCCCTAGCAATAG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCACTGTGTAGGACAGGTTGGCCTCAAACCACAGCCCTAGCAATAG  50

seq1  CACTGGGATTAAAGGCATGTGGCACGAGAGAGGCTTAACTTTCATCTTTA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACTGGGATTAAAGGCATGTGGCACGAGAGAGGCTTAACTTTCATCTTTA  100

seq1  AACTTCCTCCACATAATGCATGGAATTATTCCATGTGGGCCGCTAGGAAA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACTTCCTCCACATAATGCATGGAATTATTCCATGTGGGCCGCTAGGAAA  150

seq1  TCTCTTTGGGGCCAATGCTGTCCTTGGTGGTGTACTTGGGCAACACCCAC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTCTTTGGGGCCAATGCTGTCCTTGGTGGTGTACTTGGGCAACACCCAC  200

seq1  CCATCTTGCTTGGTCCTCTCTCTTCTTCCTCACTCCAAGGAATCCATCAC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCATCTTGCTTGGTCCTCTCTCTTCTTCCTCACTCCAAGGAATCCATCAC  250

seq1  GAGCCCTCATTCAGGGTGGAAAGAAATAGAATCACTGTTATCTCCTGAGA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGCCCTCATTCAGGGTGGAAAGAAATAGAATCACTGTTATCTCCTGAGA  300

seq1  TGCAGCTCCGGCCTGATATGTAACCATCCTAGACTTGGTAGGAAGCTACT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCAGCTCCGGCCTGATATGTAACCATCCTAGACTTGGTAGGAAGCTACT  350

seq1  CAGTGACCCATGGCAGTGTTACTGGGCCCTGGTTGTGCCTTCCTGTCCTA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGTGACCCATGGCAGTGTTACTGGGCCCTGGTTGTGCCTTCCTGTCCTA  400

seq1  GGTGGTCAGACAAGATGTCCTTCCCTGAAGCCTTCCTTCGAAAGAGCCTG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTGGTCAGACAAGATGTCCTTCCCTGAAGCCTTCCTTCGAAAGAGCCTG  450

seq1  CTAATGCTCAGACTTTGACATATTCCAGAGAAGGGCAGCCAGCCTCTGTT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAATGCTCAGACTTTGACATATTCCAGAGAAGGGCAGCCAGCCTCTGTT  500

seq1  GGGTTGTCGCTGCTCTGGCTACACTCCAGGTTGCTGAGGAAGGCCTGCAG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGTTGTCGCTGCTCTGGCTACACTCCAGGTTGCTGAGGAAGGCCTGCAG  550

seq1  AGTACATGGGATTGGTCCTGGGGTATTGGTAAACAACTTAACTTTCTCAG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTACATGGGATTGGTCCTGGGGTATTGGTAAACAACTTAACTTTCTCAG  600

seq1  CAGTACTGTGGCAGGTGGAGTTCTGAAACACTCCAGCACTAAGAAGGCCA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGTACTGTGGCAGGTGGAGTTCTGAAACACTCCAGCACTAAGAAGGCCA  650

seq1  GTGTGCCTCACTGGCTCACCTTCCCCAGAGGGTGTCCTATCCATAAATGG  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGTGCCTCACTGGCTCACCTTCCCCAGAGGGTGTCCTATCCATAAATGG  700

seq1  GTATCCCTGAATAGCAGTATCCTCAGCTCAGGCTGCTCACCTGCAGGCCT  750
      |||||||||||||||||||||||||||||| |||||||||||||||||||
seq2  GTATCCCTGAATAGCAGTATCCTCAGCTCACGCTGCTCACCTGCAGGCCT  750

seq1  GTGTTAAGATGAGCTACTCATCCATTTCCAAATCTGTTGGTAGGGAGGCT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGTTAAGATGAGCTACTCATCCATTTCCAAATCTGTTGGTAGGGAGGCT  800

seq1  GATTGCCAAAGGACACAGGTTTCATTTTCTGGAGAAAACGCTGGCTATCT  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATTGCCAAAGGACACAGGTTTCATTTTCTGGAGAAAACGCTGGCTATCT  850

seq1  GGCATGGTTAGGACCCAGGCAGCAAGTTTAATCAGAGTGAGTCTCACGGA  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCATGGTTAGGACCCAGGCAGCAAGTTTAATCAGAGTGAGTCTCACGGA  900

seq1  GGGAGGACCATGTAACTGGAGCATTCCCAGAGACTGCAGAGGATGAGCAG  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGAGGACCATGTAACTGGAGCATTCCCAGAGACTGCAGAGGATGAGCAG  950

seq1  AGAAAGTCACAGCAGGAAGCGGCTACAACCAAAGATTTGGGTGCAGAAGG  1000
      || ||||||||||||  |||||||||| |  |||||||||||||||||| 
seq2  AG-AAGTCACAGCAG--AGCGGCTACATC--AAGATTTGGGTGCAGAAG-  994

seq1  CCCAGCTGGGGCCAGATTGTGGAGGGCTTTAAATGTCAGGCTTAGGAATT  1050
       |||||||||| |||| |||||||| |||  ||||||||||||||||  |
seq2  -CCAGCTGGGG-CAGA-TGTGGAGGTCTT--AATGTCAGGCTTAGGA--T  1037

seq1  TATCAAGGGAATGAAACAATCAAACAGGTGTTTCAGGAAGATAAATTTGA  1100
      ||||||||||||| |||||||||||| |||||||| ||||||||  ||| 
seq2  TATCAAGGGAATG-AACAATCAAACA-GTGTTTCA-GAAGATAA--TTG-  1081

seq1  AGAGAATGTACAGGATGAATTGGGAAATCTGGAAGCATG  1139
      ||||||| |||| |||| |||||||||||| | ||||||
seq2  AGAGAATTTACA-GATG-ATTGGGAAATCT-GTAGCATG  1117