BAC Information

Click to search

BAC

Clone NameB6Ng01-077G10
Chromosome6 (Build37)
Map Location 47,796,868 - 47,931,958
singlet/doubletdoublet
Overlap geneZfp398, Zfp282, Zfp212, A230106D06Rik, AI894139, LOC623601
Upstream geneCntnap2, LOC622745, LOC100041064, LOC100041078, A930035D04Rik, Cul1, Ezh2, Rn4.5s, EG384379, Pdia4, LOC100041154, Zfp786
Downstream geneZfp777, Zfp746, LOC665990, Krba1, Zfp467, Sspo, EG666005, Atp6v0e2, Lrrc61, Rarres2, EG330305, Repin1, Zfp775, AI854703, Gimap8, LOC100040560, Gimap9, Gimap4, Gimap6, Gimap7, LOC100041450, Gimap1, Gimap5, Gimap3, Tmem176b, Tmem176a, EG666105, Abp1, 1600015I10Rik, LOC100040589, Doxl2
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-077G10.bB6Ng01-077G10.g
ACCDH893386DH893387
length6971,180
definitionDH893386|Mus musculus domesticus DNA, BAC clone: B6Ng01-077G10, 5' end.DH893387|Mus musculus domesticus DNA, BAC clone: B6Ng01-077G10, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(47,931,261 - 47,931,958)(47,796,868 - 47,798,063)
sequence
gaattcaaagaatctcttaagttaattctatgaggtttaaagcattttat
aaatggaatacagactactttattttatctatttagtgtacaatatccct
tggggttttagactttcccaggtggaggaaattctgtcagtattttgatt
gagttacttctaatgcttcatattttattctataataaatgtaattttat
acaattgttttctattgtgcctgaaatatagaaattgacaaatgagattt
tttttcctcagttgtcattactatgatgaaattcatagaacatataattt
accgtcattaccaagtgaacatgcacagttcagtgatatttttaaaacct
ccataacgttggaggagaggtgaagtgatcaagagtacctcctgctctcg
cagaggacccaggctcagtttacagcacccacatatgtgttggctcacaa
acactagtaactctggttccaggacctctgagggcatcatgcacacactt
agtacacatataagcatagaaacactcatacacataaaataaaaatacat
gtttaaaaataaaaaaaatcggagcaggagagatggctcagcggttaaga
gcactgaatgctcttctaaaggtcctgagttcaaatcccagcaaccacat
ggtggctcacaaccatctgtaatgggatccgatgccctcttcaacac
gaattctgctgttcaagtagaaaatcccccaaagaggctgggcttggtgg
cacaggcctagaatctaacactggggaggtggcgacaggaacatcgtctt
aagcccatccttggctacaaagcaagttctagattagactgggctgcaaa
tattccatctgtaaaaaacaatccaaacagtccttcaaagaccgtgagaa
taatgagtttgttctctaatgtctaaaagtgtcagctaaattataggcta
actgcttgggagaaaaacgctacaaaacagtattggagtgttgctcagcg
gtacagcatttgtgtggcacatctaaagccctagggttaacaccaggtat
tacaagaaacaaaagttagcagtgtcagacaaaatatcctttaagtcagc
cagtaaaccatataaaattggacaagaattccattgactcatgaacttta
aaaaaaaattcaaactagatacaaaaaaatggaggtagcaagatctcaac
atgaactggagagagaagaataagatccagcatgagctggagagccagat
aatgaaggtctcaagtcagctaacgagtactaccaagccctctcagtgca
aaggaagctgagggcttctgtgcacctgagttcaggagtctgagagcagc
cttagcagtatagtaaagcctgcattcctgaaagtaaaaacagatcatga
attagtatgtaaagtaagtgaagttcatcagaaattgtggcacttaattt
tacaaatgagaacaaatttgagggctggagagatgtttaggcgttaaagg
ctaggcatgcaactaaaagatgttaagagtttggttcctatcactcatga
ctttctctccaccctaccccccaaaagaaagaaaaactagaattgagaac
agattagtctattttagagaaaatgaaatggagcatgatgtatgggagca
tctgagaaagatcaatgtgaagaaaaattgttgattttacagatgtcata
tgagtaggccagagagaacttcagatgtagttaacatcaccagttgcaac
cttgaatacagaaaatggaaatgcattgaaatggagaaaaaaaaaaagaa
aattccgatccaaaccagcaattggtggtttgtggaattaggtgacattc
tttttttttttgtagaatgattgcctgaat
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr6_47931261_47931958
seq2: B6Ng01-077G10.b_48_744 (reverse)

seq1  GTGTATGAAGAGGGCATCGGATCCCATTACAGATGGTTGTGAGCCACCAT  50
      |||| |||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGT-TGAAGAGGGCATCGGATCCCATTACAGATGGTTGTGAGCCACCAT  49

seq1  GTGGTTGCTGGGATTTGAACTCAGGACCTTTAGAAGAGCATTCAGTGCTC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGGTTGCTGGGATTTGAACTCAGGACCTTTAGAAGAGCATTCAGTGCTC  99

seq1  TTAACCGCTGAGCCATCTCTCCTGCTCCGATTTTTTTTATTTTTAAACAT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAACCGCTGAGCCATCTCTCCTGCTCCGATTTTTTTTATTTTTAAACAT  149

seq1  GTATTTTTATTTTATGTGTATGAGTGTTTCTATGCTTATATGTGTACTAA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTATTTTTATTTTATGTGTATGAGTGTTTCTATGCTTATATGTGTACTAA  199

seq1  GTGTGTGCATGATGCCCTCAGAGGTCCTGGAACCAGAGTTACTAGTGTTT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGTGTGCATGATGCCCTCAGAGGTCCTGGAACCAGAGTTACTAGTGTTT  249

seq1  GTGAGCCAACACATATGTGGGTGCTGTAAACTGAGCCTGGGTCCTCTGCG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGAGCCAACACATATGTGGGTGCTGTAAACTGAGCCTGGGTCCTCTGCG  299

seq1  AGAGCAGGAGGTACTCTTGATCACTTCACCTCTCCTCCAACGTTATGGAG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGCAGGAGGTACTCTTGATCACTTCACCTCTCCTCCAACGTTATGGAG  349

seq1  GTTTTAAAAATATCACTGAACTGTGCATGTTCACTTGGTAATGACGGTAA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTTTAAAAATATCACTGAACTGTGCATGTTCACTTGGTAATGACGGTAA  399

seq1  ATTATATGTTCTATGAATTTCATCATAGTAATGACAACTGAGGAAAAAAA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTATATGTTCTATGAATTTCATCATAGTAATGACAACTGAGGAAAAAAA  449

seq1  ATCTCATTTGTCAATTTCTATATTTCAGGCACAATAGAAAACAATTGTAT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCTCATTTGTCAATTTCTATATTTCAGGCACAATAGAAAACAATTGTAT  499

seq1  AAAATTACATTTATTATAGAATAAAATATGAAGCATTAGAAGTAACTCAA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAATTACATTTATTATAGAATAAAATATGAAGCATTAGAAGTAACTCAA  549

seq1  TCAAAATACTGACAGAATTTCCTCCACCTGGGAAAGTCTAAAACCCCAAG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAAAATACTGACAGAATTTCCTCCACCTGGGAAAGTCTAAAACCCCAAG  599

seq1  GGATATTGTACACTAAATAGATAAAATAAAGTAGTCTGTATTCCATTTAT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGATATTGTACACTAAATAGATAAAATAAAGTAGTCTGTATTCCATTTAT  649

seq1  AAAATGCTTTAAACCTCATAGAATTAACTTAAGAGATTCTTTGAATTC  698
      ||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAATGCTTTAAACCTCATAGAATTAACTTAAGAGATTCTTTGAATTC  697

seq1: chr6_47796868_47798063
seq2: B6Ng01-077G10.g_70_1249

seq1  GAATTCTGCTGTTCAAGTAGAAAATCCCCCAAAGAGGCTGGGCTTGGTGG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTGCTGTTCAAGTAGAAAATCCCCCAAAGAGGCTGGGCTTGGTGG  50

seq1  CACAGGCCTAGAATCTAACACTGGGGAGGTGGCGACAGGAACATCGTCTT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACAGGCCTAGAATCTAACACTGGGGAGGTGGCGACAGGAACATCGTCTT  100

seq1  AAGCCCATCCTTGGCTACAAAGCAAGTTCTAGATTAGACTGGGCTGCAAA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGCCCATCCTTGGCTACAAAGCAAGTTCTAGATTAGACTGGGCTGCAAA  150

seq1  TATTCCATCTGTAAAAAACAATCCAAACAGTCCTTCAAAGACCGTGAGAA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTCCATCTGTAAAAAACAATCCAAACAGTCCTTCAAAGACCGTGAGAA  200

seq1  TAATGAGTTTGTTCTCTAATGTCTAAAAGTGTCAGCTAAATTATAGGCTA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAATGAGTTTGTTCTCTAATGTCTAAAAGTGTCAGCTAAATTATAGGCTA  250

seq1  ACTGCTTGGGAGAAAAACGCTACAAAACAGTATTGGAGTGTTGCTCAGCG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTGCTTGGGAGAAAAACGCTACAAAACAGTATTGGAGTGTTGCTCAGCG  300

seq1  GTACAGCATTTGTGTGGCACATCTAAAGCCCTAGGGTTAACACCAGGTAT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTACAGCATTTGTGTGGCACATCTAAAGCCCTAGGGTTAACACCAGGTAT  350

seq1  TACAAGAAACAAAAGTTAGCAGTGTCAGACAAAATATCCTTTAAGTCAGC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACAAGAAACAAAAGTTAGCAGTGTCAGACAAAATATCCTTTAAGTCAGC  400

seq1  CAGTAAACCATATAAAATTGGACAAGAATTCCATTGACTCATGAACTTTA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGTAAACCATATAAAATTGGACAAGAATTCCATTGACTCATGAACTTTA  450

seq1  AAAAAAAATTCAAACTAGATACAAAAAAATGGAGGTAGCAAGATCTCAAC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAAAAATTCAAACTAGATACAAAAAAATGGAGGTAGCAAGATCTCAAC  500

seq1  ATGAACTGGAGAGAGAAGAATAAGATCCAGCATGAGCTGGAGAGCCAGAT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGAACTGGAGAGAGAAGAATAAGATCCAGCATGAGCTGGAGAGCCAGAT  550

seq1  AATGAAGGTCTCAAGTCAGCTAACGAGTACTACCAAGCCCTCTCAGTGCA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATGAAGGTCTCAAGTCAGCTAACGAGTACTACCAAGCCCTCTCAGTGCA  600

seq1  AAGGAAGCTGAGGGCTTCTGTGCACCTGAGTTCAGGAGTCTGAGAGCAGC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGGAAGCTGAGGGCTTCTGTGCACCTGAGTTCAGGAGTCTGAGAGCAGC  650

seq1  CTTAGCAGTATAGTAAAGCCTGCATTCCTGAAAGTAAAAACAGATCATGA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTAGCAGTATAGTAAAGCCTGCATTCCTGAAAGTAAAAACAGATCATGA  700

seq1  ATTAGTATGTAAAGTAAGTGAAGTTCATCAGAAATTGTGGCACTTAATTT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTAGTATGTAAAGTAAGTGAAGTTCATCAGAAATTGTGGCACTTAATTT  750

seq1  TACAAATGAGAACAAATTTGAGGGCTGGAGAGATGATTCAGGCGTTAAAG  800
      ||||||||||||||||||||||||||||||||||| || |||||||||||
seq2  TACAAATGAGAACAAATTTGAGGGCTGGAGAGATG-TTTAGGCGTTAAAG  799

seq1  GCTAGGCATGCAACT-AAAGATGTTAAGAGTTTGGTTCCTATCACTCATG  849
      ||||||||||||||| ||||||||||||||||||||||||||||||||||
seq2  GCTAGGCATGCAACTAAAAGATGTTAAGAGTTTGGTTCCTATCACTCATG  849

seq1  ACTTTCTCTCCACCCTACCCCCCAAAAGAAAGAAAAACTAGAATTTGAGA  899
      ||||||||||||||||||||||||||||||||||||||||||| ||||||
seq2  ACTTTCTCTCCACCCTACCCCCCAAAAGAAAGAAAAACTAGAA-TTGAGA  898

seq1  ACAGATTAGTCTA-TTTAGAGAAAATGAAAATGGAGCATGATGTATGGAA  948
      ||||||||||||| ||||||||||||| |||||||||||||||||||| |
seq2  ACAGATTAGTCTATTTTAGAGAAAATG-AAATGGAGCATGATGTATGGGA  947

seq1  GCAATCTGAGAAAGATCAATGTGAAGAAAAATTGTTGATTTTACAGATGG  998
      || |||||||||||||||||||||||||||||||||||||||||||||| 
seq2  GC-ATCTGAGAAAGATCAATGTGAAGAAAAATTGTTGATTTTACAGATGT  996

seq1  CATAAGAGTTAGCCAGAGAGGAACTTCAGAGTGTTAGTTAAACATCAACA  1048
      |||| ||||  |||||||| |||||||||| || ||||| |||||| || 
seq2  CATATGAGTAGGCCAGAGA-GAACTTCAGA-TG-TAGTT-AACATC-ACC  1041

seq1  AGTTGCAAACATTGAAATACAGAAAATGGAAAATGCATTGAAAATGGAAG  1098
      |||||| ||| ||| |||||||||||||| |||||||||| |||||| ||
seq2  AGTTGC-AACCTTG-AATACAGAAAATGG-AAATGCATTG-AAATGG-AG  1086

seq1  AAAAAAAAAAAGAAAATTCCGATCCAAAACAGCAAATAGGTGGTTTGTGG  1148
      |||||||||||||||||||||||||||| |||| ||| ||||||||||||
seq2  AAAAAAAAAAAGAAAATTCCGATCCAAACCAGC-AATTGGTGGTTTGTGG  1135

seq1  ATTTAGGTGACATCTTTTTTTTTTTAGTTAGAGAATGAATTGCTGAAT  1196
      | |||||||||||  |||||||||| ||   ||||||| |  ||||||
seq2  AATTAGGTGACATTCTTTTTTTTTTTGT---AGAATGATTGCCTGAAT  1180