BAC Information

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BAC

Clone NameB6Ng01-078B15
Chromosome6 (Build37)
Map Location 78,934,951 - 78,935,768
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC668169, EG434050, Pap, Reg3d, Reg3a, Reg2, Reg1, Reg3g, LOC621716, Ppia-ps6_789.1
Downstream geneLOC384440, LOC621815, LOC100043392
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-078B15.bB6Ng01-078B15.g
ACCDH893896DH893897
length1,190146
definitionDH893896|Mus musculus domesticus DNA, BAC clone: B6Ng01-078B15, 5' end.DH893897|Mus musculus domesticus DNA, BAC clone: B6Ng01-078B15, 3' end.
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
gaattcagtaagattgtaaaagctaagtcactcccttacacaggaattta
ccatcactaaggaagaaggaagtttcagaccaaaggagaaaccagaatag
atactatagcagagttacacccatacacacgtatttacaatggcctaagg
ggaaggtggactatacaagagactaaaataggaactatggcaaggacgag
aagcccttgaccccggcttctaagattagtgaatcttaggtggagccctt
gttgatcccagctgttatcaatgtattctatcctggttcccgttagacct
tttgaatttgcattcctctgttttatgtaagattctggttacctcaattg
taccttgcgaacatgtcacccaacttccttattgtgctctgcataaaaag
tctgatgcttgagttgtaaaattacactcagattccacacgaactctcct
gtgtgtgtgtctgtctgtcgctcatccacgttttgcccacccacatcgag
agaccccgttccacgcagacacagggacccagaaggtctccggcacaaga
catgcataagctcatattggacaaaaccctagcattgggcaagtagcaca
aaaatcccacacctaaatgagaagttgttggaaactgatagctgtagaga
gcgaatggacttttaaaaaaattttttgaccctctgtatgtcaactactc
ttcagggcatgtccaactcccaagagtagttaagaagcagaaattacatg
cactcaggaaaaaaagaagtaagtgtaagattttattggtagaaatgaga
aaggtaaagagacaaatatagggagagctgggagactggaactttgtgat
caaaatatattacaaaaaattctcaagtaattaataaaaatattttcaag
agtgtctcctggatcaagagtttgagtgtttccagagtaccttgtaaata
gtgtgttatcctttgccctttaatgtcagccgtgtgtgttctcttctcag
tccagttcattatactttctcctatgaatctttgtggtgagtggagagat
ggctcagcttgtaatggacttgtcaccatcatacccgtagcaagttgtgt
acatgttaaccacaggttgcaagagacagctcctgaaaggtttgatctga
cttcatgcatcaggatagattgctcaccaatgcaattgca
agtgggaggagaagccctcgggcctgagggtgttcaatgttccagtgtag
gagaatgccagggcaagagggaggatgggagtctatgggtagagcagcac
cttcatagaggcaggggtgggggtgggtcagatagggtagggggtg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr6_78934951_78935768
seq2: B6Ng01-078B15.b_439_1235

seq1  TAAAAAGTCTGATGCTTGAGTTGTAAAATTACACTCAGATTCCACACGAA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAAAAGTCTGATGCTTGAGTTGTAAAATTACACTCAGATTCCACACGAA  50

seq1  CTCTCCTGTGTGTGTGTCTGTCTGTCGCTCATCCACGTTTTGCCCACCCA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTCCTGTGTGTGTGTCTGTCTGTCGCTCATCCACGTTTTGCCCACCCA  100

seq1  CATCGAGAGACCCCGTTCCACGCAGACACAGGGACCCAGAAGGTCTCCGG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATCGAGAGACCCCGTTCCACGCAGACACAGGGACCCAGAAGGTCTCCGG  150

seq1  CACAAGACATGCATAAGCTCATATTGGACAAAACCCTAGCATTGGGCAAG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACAAGACATGCATAAGCTCATATTGGACAAAACCCTAGCATTGGGCAAG  200

seq1  TAGCACAAAAATCCCACACCTAAATGAGAAGTTGTTGGAAACTGATAGCT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGCACAAAAATCCCACACCTAAATGAGAAGTTGTTGGAAACTGATAGCT  250

seq1  GTAGAGAGCGAATGGACTTTTAAAAAAATTTTTTGACCCTCTGTATGTCA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTAGAGAGCGAATGGACTTTTAAAAAAATTTTTTGACCCTCTGTATGTCA  300

seq1  ACTACTCTTCAGGGCATGTCCAACTCCCAAGAGTAGTTAAGAAGCAGAAA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTACTCTTCAGGGCATGTCCAACTCCCAAGAGTAGTTAAGAAGCAGAAA  350

seq1  TTACATGCACTCAGGAAAAAAAGAAGTAAGTGTAAGATTTTATTGGTAGA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTACATGCACTCAGGAAAAAAAGAAGTAAGTGTAAGATTTTATTGGTAGA  400

seq1  AATGAGAAAGGTAAAGAGACAAATATAGGGAGAGCTGGGAGACTGGAACT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATGAGAAAGGTAAAGAGACAAATATAGGGAGAGCTGGGAGACTGGAACT  450

seq1  TTGTGATCAAAATATATTACAAAAAATTCTCAAGTAATTAATAAAAATAT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGTGATCAAAATATATTACAAAAAATTCTCAAGTAATTAATAAAAATAT  500

seq1  TTTCAAGAGTGTCTCCTGGATCAAGAGTTTTGAGTGTTTTCCAGAGTACC  550
      ||||||||||||||||||||||||||| |||||||| |||||||||||||
seq2  TTTCAAGAGTGTCTCCTGGATCAAGAG-TTTGAGTG-TTTCCAGAGTACC  548

seq1  TTGTAAATAGTGTGTTATCCTTTGCCCCTTTAATGTCAGCCGTGTGTGTT  600
      |||||||||||||||||||||||| |||||||||||||||||||||||||
seq2  TTGTAAATAGTGTGTTATCCTTTG-CCCTTTAATGTCAGCCGTGTGTGTT  597

seq1  CTCTTCTCAGTCCAGTTCATTTATTACTTTCTCCTAATGAATCTTTTGTG  650
      |||||||||||||||||||||   ||||||||||| ||||||| ||||||
seq2  CTCTTCTCAGTCCAGTTCATT--ATACTTTCTCCT-ATGAATC-TTTGTG  643

seq1  TTGAGTTGGAGAGATGGCTCAGCTTGGTAATGGAACTTGTCACCAATCAT  700
       |||| ||||||||||||||||||| ||||||| |||||||||| |||||
seq2  GTGAG-TGGAGAGATGGCTCAGCTT-GTAATGG-ACTTGTCACC-ATCAT  689

seq1  ACCCGTAGGCAAGTTGTGTACCATG-TAACCACAGGGTGGAAAGAAGGAA  749
      ||||||| |||||||||||| |||| |||||||||| || ||     || 
seq2  ACCCGTA-GCAAGTTGTGTA-CATGTTAACCACAGGTTGCAA-----GAG  732

seq1  CCAGCTCCTGAAAGGTTTGATCTGACTTCATGCATCCTATGATAGATTTG  799
       |||||||||||||||||||||||||||||||||||  | |||||| |||
seq2  ACAGCTCCTGAAAGGTTTGATCTGACTTCATGCATC--AGGATAGA-TTG  779

seq1  CTCACACAATGCATTTGCA  818
      ||||| ||||||| |||||
seq2  CTCAC-CAATGCAATTGCA  797