BAC Information

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BAC

Clone NameB6Ng01-078C08
Chromosome6 (Build37)
Map Location 78,578,983 - 78,695,829
singlet/doubletdoublet
Overlap genenone
Upstream geneCtnna2, LOC668169, EG434050, Pap, Reg3d, Reg3a, Reg2, Reg1, Reg3g, LOC621716, Ppia-ps6_789.1
Downstream geneLOC384440, LOC621815
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-078C08.bB6Ng01-078C08.g
ACCDH893927DH893928
length1,2001,145
definitionDH893927|Mus musculus domesticus DNA, BAC clone: B6Ng01-078C08, 5' end.DH893928|Mus musculus domesticus DNA, BAC clone: B6Ng01-078C08, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(78,694,613 - 78,695,829)(78,578,983 - 78,580,138)
sequence
gaattcccttaatatacagagaaatttcataatttctgtgactctagaca
accctgactatataaagtatcttagccagaattccaagtttgatgaaatg
gtacccagagtgcattgaaaattagtttgtttcagacagttttccaaact
cattgatgctttcttgtctacctctgtgttttgacaatgctgcagttctg
atcattcttctgctccttcagttgtgagagatgacttgtggttacatatt
tgacctttatagcacacttgcaagtgtctgtctgctgtcccctttgtttg
cttccacagaagtctttgaaactgcatccttgctgctacccattgaatct
ataacccatacagtcagccttgtcaaccacagcattaagtacttaaccca
tttggaaagatcaaagtgctaacaagaagaaaaatcacatggttctaaaa
acagttccttgattaagagcatttgctgctctttgtgaggagctcagttt
ggttcccagcacctatggagttaacaagcttataagtgcctgttaacccc
agttctagaaaatttgataccattttttggctttcaggggcaccaacaca
aatacacatacacacacatacacacacacacacacacacacacacacaca
tacacacacatacacacacacacatacacacacatacacacacacaagca
tacactaaataaataaataatacatggattaatatatacatacaaaaata
cataaaatatttaaaagaggtatttgattaagataaaataaacatgagaa
tcatttttaaaaaaataagatgaatgaaaaaagctatttaaagaatttca
acatttccagggttcttgtagctaaaattatcttgaaataattaactttg
gttatatttagtattggtgacagtgacagaaaatagttataaacatctta
taaagatgctcttgagtcatatatttctttgtgttttattttgtaactta
attgaatttaatgtgttgcccatatttttgtatgtgatccacatgtttgt
atggttcaatggagtagatgagctagaagattctatttattgtcgcttat
gaattgttatgttggttcaggaaactgaactcaggtcctctagagaaaag
cccatgcttttaacacgctgacatttcgactgttttgtatttgagttggt

gaattcccaacagttacttctataccatacactggaacttgttctaaaag
taatgcaggcaataaattctctagagcagacaaaagctgtagtattggac
aaaaattatgatgaaataatgaactagtaaaaagacaacttcctgcaagg
ttattttcttacatgtgaataagaaagatgaaaaaactccctttatgtgg
ctaacaaagtatttctaatactcattaagacttatataaattaaaatctt
ttctttatcctgatctaagaatgtgtcaagataggagataccatattact
gctaagttaatatgtatttaaagacttaaaggataaatttattttgtagt
tcagaattttgtactgtgagatgggtgcttgtgagatggctcagcaggta
aaaacatttgctgccaagagcaaggatttgacactgtttttccaggactc
acatggtagagggagataactgacacccataagctgttctctgatcatca
cacttatactgaggcatgggtaccaccctatcatacctacacagacacaa
ccccccccacacacacacacagagagagagagagagaaagagagagagac
agagacagagacagagacagagacagagagacagagagagaagagagaga
gacagacagagacagagacagagagagacagagagagacagacagacaga
cacacacacacacacacacacactcacgcacgcacgcatgcacgcacgca
cgcacgcacgcacacacgcatgcacaaataaataatagactttttaaaag
gctatcaagatatcagtgtataaaagtacttgtagccagggctgatgatc
tgagttcaatcaagggatttcagaaagtggaaagagataactgatccctc
caacttctcttctgacctctatatatatatccatgttgtttcatagtata
tacataccctctaagtaaataaatataattaaaaaaattaaatgaattat
gacatgatcagagactttttttctggattgtgtgccttagcagggtctct
aagagacacatgaccataattcttttataaagaaaagtattcactggggc
tggctatagttccaagaattaggttattatcatcatggcagaaac
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr6_78694613_78695829
seq2: B6Ng01-078C08.b_49_1248 (reverse)

seq1  ACCAACTCAAAAATACAAAACAGGCTCTGGAAAAATGGTTCAGC-TGTTA  49
      ||||||||  ||||||||||||| |       |||||  ||||| |||| 
seq2  ACCAACTC--AAATACAAAACAGTC------GAAATG--TCAGCGTGTT-  39

seq1  AAAAGCATGGGCTGTTTCTCTAGAGGACCTGAGTTCAGTTTCCTGAACCC  99
      ||||||||||||| ||||||||||||||||||||||||||||||||||| 
seq2  AAAAGCATGGGCT-TTTCTCTAGAGGACCTGAGTTCAGTTTCCTGAACCA  88

seq1  ACATAACAATTCATAAGCGACAATTAATAGGATCCTCCTAGCTCATCTTA  149
      |||||||||||||||||||||||| ||||| || || |||||||||||  
seq2  ACATAACAATTCATAAGCGACAATAAATAGAAT-CTTCTAGCTCATCT--  135

seq1  ACTCCAATTGAACCATACATACATGTGGATCACATACAAAAATATGGGGC  199
      ||||| ||||||||||||| ||||||||||||||||||||||||| ||||
seq2  ACTCC-ATTGAACCATACAAACATGTGGATCACATACAAAAATAT-GGGC  183

seq1  AACACATTAAATTCAATTAAGTTACAAAATAAAAACACAAAGAAATATAT  249
      |||||||||||||||||||||||||||||| |||||||||||||||||||
seq2  AACACATTAAATTCAATTAAGTTACAAAAT-AAAACACAAAGAAATATAT  232

seq1  GACTCAAGAGCATCTTTATAAGATGTTTATAACTATTTTCTGTCACTGTC  299
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACTCAAGAGCATCTTTATAAGATGTTTATAACTATTTTCTGTCACTGTC  282

seq1  ACCAATACTAAATATAACCAAAGTTAATTATTTCAAGATAATTTTAGCTA  349
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCAATACTAAATATAACCAAAGTTAATTATTTCAAGATAATTTTAGCTA  332

seq1  CAAGAACCCTGGAAATGTTGAAATTCTTTAAATAGCTTTTTTCATTCATC  399
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAGAACCCTGGAAATGTTGAAATTCTTTAAATAGCTTTTTTCATTCATC  382

seq1  TTATTTTTTTAAAAATGATTCTCATGTTTATTTTATCTTAATCAAATACC  449
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTATTTTTTTAAAAATGATTCTCATGTTTATTTTATCTTAATCAAATACC  432

seq1  TCTTTTAAATATTTTATGTATTTTTGTATGTATATATTAATCCATGTATT  499
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTTTAAATATTTTATGTATTTTTGTATGTATATATTAATCCATGTATT  482

seq1  ATTTATTTATTTAGTGTATGCTTGTGTGTGTGTATGTGTGTGTATGTGTG  549
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTATTTATTTAGTGTATGCTTGTGTGTGTGTATGTGTGTGTATGTGTG  532

seq1  TGTGTGTATGTGTGTGTATGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTA  599
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGTGTATGTGTGTGTATGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTA  582

seq1  TGTGTGTGTATGTGTATTTGTGTTGGTGCCCCTGAAAGCCAAAAAATGGT  649
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGTGTGTATGTGTATTTGTGTTGGTGCCCCTGAAAGCCAAAAAATGGT  632

seq1  ATCAAATTTTCTAGAACTGGGGTTAACAGGCACTTATAAGCTTGTTAACT  699
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCAAATTTTCTAGAACTGGGGTTAACAGGCACTTATAAGCTTGTTAACT  682

seq1  CCATAGGTGCTGGGAACCAAACTGAGCTCCTCACAAAGAGCAGCAAATGC  749
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCATAGGTGCTGGGAACCAAACTGAGCTCCTCACAAAGAGCAGCAAATGC  732

seq1  TCTTAATCAAGGAACTGTTTTTAGAACCATGTGATTTTTCTTCTTGTTAG  799
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTAATCAAGGAACTGTTTTTAGAACCATGTGATTTTTCTTCTTGTTAG  782

seq1  CACTTTGATCTTTCCAAATGGGTTAAGTACTTAATGCTGTGGTTGACAAG  849
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACTTTGATCTTTCCAAATGGGTTAAGTACTTAATGCTGTGGTTGACAAG  832

seq1  GCTGACTGTATGGGTTATAGATTCAATGGGTAGCAGCAAGGATGCAGTTT  899
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTGACTGTATGGGTTATAGATTCAATGGGTAGCAGCAAGGATGCAGTTT  882

seq1  CAAAGACTTCTGTGGAAGCAAACAAAGGGGACAGCAGACAGACACTTGCA  949
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAAGACTTCTGTGGAAGCAAACAAAGGGGACAGCAGACAGACACTTGCA  932

seq1  AGTGTGCTATAAAGGTCAAATATGTAACCACAAGTCATCTCTCACAACTG  999
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTGTGCTATAAAGGTCAAATATGTAACCACAAGTCATCTCTCACAACTG  982

seq1  AAGGAGCAGAAGAATGATCAGAACTGCAGCATTGTCAAAACACAGAGGTA  1049
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGGAGCAGAAGAATGATCAGAACTGCAGCATTGTCAAAACACAGAGGTA  1032

seq1  GACAAGAAAGCATCAATGAGTTTGGAAAACTGTCTGAAACAAACTAATTT  1099
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACAAGAAAGCATCAATGAGTTTGGAAAACTGTCTGAAACAAACTAATTT  1082

seq1  TCAATGCACTCTGGGTACCATTTCATCAAACTTGGAATTCTGGCTAAGAT  1149
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAATGCACTCTGGGTACCATTTCATCAAACTTGGAATTCTGGCTAAGAT  1132

seq1  ACTTTATATAGTCAGGGTTGTCTAGAGTCACAGAAATTATGAAATTTCTC  1199
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTTTATATAGTCAGGGTTGTCTAGAGTCACAGAAATTATGAAATTTCTC  1182

seq1  TGTATATTAAGGGAATTC  1217
      ||||||||||||||||||
seq2  TGTATATTAAGGGAATTC  1200

seq1: chr6_78578983_78580138
seq2: B6Ng01-078C08.g_70_1214

seq1  GAATTCCCAACAGTTACTTCTATACCATACACTGGAACTTGTTCTAAAAG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCCAACAGTTACTTCTATACCATACACTGGAACTTGTTCTAAAAG  50

seq1  TAATGCAGGCAATAAATTCTCTAGAGCAGACAAAAGCTGTAGTATTGGAC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAATGCAGGCAATAAATTCTCTAGAGCAGACAAAAGCTGTAGTATTGGAC  100

seq1  AAAAATTATGATGAAATAATGAACTAGTAAAAAGACAACTTCCTGCAAGG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAATTATGATGAAATAATGAACTAGTAAAAAGACAACTTCCTGCAAGG  150

seq1  TTATTTTCTTACATGTGAATAAGAAAGATGAAAAAACTCCCTTTATGTGG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTATTTTCTTACATGTGAATAAGAAAGATGAAAAAACTCCCTTTATGTGG  200

seq1  CTAACAAAGTATTTCTAATACTCATTAAGACTTATATAAATTAAAATCTT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAACAAAGTATTTCTAATACTCATTAAGACTTATATAAATTAAAATCTT  250

seq1  TTCTTTATCCTGATCTAAGAATGTGTCAAGATAGGAGATACCATATTACT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTTTATCCTGATCTAAGAATGTGTCAAGATAGGAGATACCATATTACT  300

seq1  GCTAAGTTAATATGTATTTAAAGACTTAAAGGATAAATTTATTTTGTAGT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTAAGTTAATATGTATTTAAAGACTTAAAGGATAAATTTATTTTGTAGT  350

seq1  TCAGAATTTTGTACTGTGAGATGGGTGCTTGTGAGATGGCTCAGCAGGTA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAGAATTTTGTACTGTGAGATGGGTGCTTGTGAGATGGCTCAGCAGGTA  400

seq1  AAAACATTTGCTGCCAAGAGCAAGGATTTGACACTGTTTTTCCAGGACTC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAACATTTGCTGCCAAGAGCAAGGATTTGACACTGTTTTTCCAGGACTC  450

seq1  ACATGGTAGAGGGAGATAACTGACACCCATAAGCTGTTCTCTGATCATCA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACATGGTAGAGGGAGATAACTGACACCCATAAGCTGTTCTCTGATCATCA  500

seq1  CACTTATACTGAGGCATGGGTACCACCCTATCATACCTACACAGACACAA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACTTATACTGAGGCATGGGTACCACCCTATCATACCTACACAGACACAA  550

seq1  CCCCCCCCACACACACACACAGAGAGAGAGAGAGAGAAAGAGAGAGAGAC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCCCCCCACACACACACACAGAGAGAGAGAGAGAGAAAGAGAGAGAGAC  600

seq1  AGAGACAGAGACAGAGACAGAGACAGAGAGACAGAGAGAGAAGAGAGAGA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGACAGAGACAGAGACAGAGACAGAGAGACAGAGAGAGAAGAGAGAGA  650

seq1  GACAGACAGAGACAGAGACAGAGAGAGACAGAGAGAGACAGACAGACAGA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACAGACAGAGACAGAGACAGAGAGAGACAGAGAGAGACAGACAGACAGA  700

seq1  CACACACACACACACACACACACTCACGCACGCACGCATGCACGCACGCA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACACACACACACACACACACACTCACGCACGCACGCATGCACGCACGCA  750

seq1  CGCACGCACGCACACACGCATGCACAAATAAATAATAGACTTTTTAAAAG  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGCACGCACGCACACACGCATGCACAAATAAATAATAGACTTTTTAAAAG  800

seq1  GCTATCAAGATATCAGTGTATAAAAGTACTTGTAGCCAGGGCTGATGATC  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTATCAAGATATCAGTGTATAAAAGTACTTGTAGCCAGGGCTGATGATC  850

seq1  TGAGTTCAATCAAGGGATTTCAGAAAGTGGAAAGAGATAACTGATCCCTC  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAGTTCAATCAAGGGATTTCAGAAAGTGGAAAGAGATAACTGATCCCTC  900

seq1  CAACTTCTCTTCTGACCTCTATATATTATATCCATGTTGTTTCATAGTAT  950
      ||||||||||||||||||||||||| ||||||||||||||||||||||||
seq2  CAACTTCTCTTCTGACCTCTATATA-TATATCCATGTTGTTTCATAGTAT  949

seq1  ATACATACCCTCTAAGTAAATAAATATAATTTAAAAAAATTAAATGAATT  1000
      ||||||||||||||||||||||||||||| ||||||||||||||||||||
seq2  ATACATACCCTCTAAGTAAATAAATATAA-TTAAAAAAATTAAATGAATT  998

seq1  ATGACATGGATCAGAAGACTTTTTTTCTGGATTGTGTGCCTTAGCATGTG  1050
      ||||||| |||||| ||||||||||||||||||||||||||||||| | |
seq2  ATGACAT-GATCAG-AGACTTTTTTTCTGGATTGTGTGCCTTAGCA-GGG  1045

seq1  TCTCTAAAGAGACACATGACCATAATATCTTTTATAAAGGAAAGTATTTC  1100
      ||||| |||||||||||||||||||| |||||||||||| |||||| |||
seq2  TCTCT-AAGAGACACATGACCATAAT-TCTTTTATAAAGAAAAGTA-TTC  1092

seq1  ACTGGGGCTGGCTTATAGTTTCAGAGATTTAGTTTATTATCATCATGGCA  1150
      |||||||||||| ||||||| || ||| |||| |||||||||||||||||
seq2  ACTGGGGCTGGC-TATAGTTCCA-AGAATTAGGTTATTATCATCATGGCA  1140

seq1  GGAAAC  1156
       |||||
seq2  -GAAAC  1145