BAC Information

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BAC

Clone NameB6Ng01-078D22
Chromosome6 (Build37)
Map Location 130,353,401 - 130,354,500
singlet/doubletsinglet
Overlap geneLOC625436
Upstream geneClec1b, Clec9a, Clec1a, Clec7a, Olr1, D630042F21Rik, Gabarapl1, Klre1, Klrd1, Klrk1, Klrc3, Klrc2, Klrc1, LOC640755, Klri1, Klri2, Gm156, Klra17, Klra5, LOC667764, Klra6, LOC100038893, LOC100038894, LOC100038895, Klra4, LOC667769, LOC100038897, Klra8, EG654449, Klra9, Klra7, LOC100038898, Klra12, Klra10, Klra13, Klra3, Klra1, LOC100038902, LOC100038903
Downstream geneEG625473, LOC640779, LOC667793, EG667798, EG625558, LOC625566, EG636947, LOC625628, EG625648, LOC667830, EG434094, Klra2, LOC434095, 2010012C16Rik, Styk1, Csda
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-078D22.bB6Ng01-078D22.g
ACCDH893993DH893994
length1,2231,127
definitionDH893993|Mus musculus domesticus DNA, BAC clone: B6Ng01-078D22, 5' end.DH893994|Mus musculus domesticus DNA, BAC clone: B6Ng01-078D22, 3' end.
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
gaattcatacaggagagaaaccttacaaatgtaatgaatgtggcaaatct
tttacacaatcctcaaaacttcaagttcactacaaaatccacacaggaga
gaaaccttacaaatgcaatgaatgtggcaaatcttttacaaggaacagag
actttaaaattcattacagaatccacacaggagagaaaccttacaaatgt
aatgaatgtggcaaatcttttggacagaacttggagcttaaggttcacta
cagaatccatacaggagaaaagccttacaaatgtactgaatgtggcaaat
cttttacacagaacaaagtgctaaaagttcactacagaattcatacagga
gagaaaccttacaaatgtaatgaatgtggcaaatcttttacacagaacaa
attgctagaagttcactacagaattcatacaagagagaaaccttacaaat
gtaatgaatgtgggaaatcttttatcaggaactcaaaacttcaggttcac
tacagaatccatacaggagagaaaccatacaaatgtaatgagtgtgggaa
atcttttacacaatcctcaaatcttcaagttcactacagaatccatacag
gagataaaccttacaaatgtaatgaatgtggcaaatcttttacacgtaac
catttgctaaaattacactacagaattcatacatgagaaaaccttacaaa
tataatgaatgtggaaaatcatttgcacataacacagagcttaaatatca
ctgcagaatttatacaggagagaaaccttacaaatgtaatgcatgtagca
aatcttttacaaggaacacaaattttaaagttcactacagaatccatact
ggagagaaaccttacaaatataatgagcatgggaaatcttttagaaaatc
ctcaaatcttcaagttcactacagaatccatacaggagagaagctttaca
tatgtcatgaatatgggacatctttacatagaacaccgggcttaaattca
ctactaatgatacaggagagaaaccttaaaaatataatgagtttggaaat
cttgttacaccaattcctccaaactcagtcactacagatccatacaggga
cagaaggtcttactattaatgatgttacaaacgtttctagacagagctaa
gtcactatgaatcatacagagagaacttacattcgttgctgggcaatctt
tactagacctcaggccttttaga
gaattccagtctagccttgggtatacagtgagttccaagtcaccctggac
tagagaatgacatcatgtgtcacagtaaaacccaaagagcgatgctgacc
tttgtgatggacttggatgaacttgaggatggtgtgcaaagtgaaaaaca
ccaggtttaggaacatctttgtgattccaggcagatcagatttctaaaac
agcccaactctatgaagcagaaacttgtaagataccaggagctagacaag
agacaatgagtacttgctactcaaggcagctaaactgatggaagaattct
agatctgaagtaatgcattataggtacactggtccacgtacttttgtgca
cttaccaatgtttcattatctgtattacatgttcttcttaccttatgaga
aataagagttatataaaggaggttttgttgttcatagcctgtgctcctga
ttatgttgatgccttcaattgtatgcccaccttcaaagatttttcaagtt
gaatatattaaactgtgtgcagtttttgtagcaagatcagctcaatatga
atattgtgtttagtgaggggctggtaatagtcatgctctattaacaaact
ttatctccaaacttcatttttctgggaagaggtatatttgtgtagctcat
ggtggcctggaatttgctgcaatgtacagattgtcctgaaagttataatc
cttctccctcagcctcataatcataggcattacatcattatgattccctt
ttcagatagtgaagttattttaaagtaatgacaaaagcatttttcatttg
tctggaatagttcaaagatgtttttggaacttttttcctatcacaaaata
tattatgtaaaaaatgtaaatatattaatcctgacataatgacaatcatc
acattttactatcacagaggggtaagattatatacatgatctctttgtta
tctcaaatttgaaaaaaaaatagttaatgatgaataataaacttgtgtca
gttaaagatgaccagtcaggatgaaagggtaaaaaagtttctggaatact
ttgtcttttcttcttctacctcatcatctgtcactgacaaatgcatgcac
caccatatggtgtagttccatgtctgc
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr6_130353401_130354500
seq2: B6Ng01-078D22.g_94_1193

seq1  GTGAGTTCCAAGTCACCCTGGACTAGAGAATGACATCATGTGTCACAGTA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGAGTTCCAAGTCACCCTGGACTAGAGAATGACATCATGTGTCACAGTA  50

seq1  AAACCCAAAGAGCGATGCTGACCTTTGTGATGGACTTGGATGAACTTGAG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAACCCAAAGAGCGATGCTGACCTTTGTGATGGACTTGGATGAACTTGAG  100

seq1  GATGGTGTGCAAAGTGAAAAACACCAGGTTTAGGAACATCTTTGTGATTC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATGGTGTGCAAAGTGAAAAACACCAGGTTTAGGAACATCTTTGTGATTC  150

seq1  CAGGCAGATCAGATTTCTAAAACAGCCCAACTCTATGAAGCAGAAACTTG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGGCAGATCAGATTTCTAAAACAGCCCAACTCTATGAAGCAGAAACTTG  200

seq1  TAAGATACCAGGAGCTAGACAAGAGACAATGAGTACTTGCTACTCAAGGC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAGATACCAGGAGCTAGACAAGAGACAATGAGTACTTGCTACTCAAGGC  250

seq1  AGCTAAACTGATGGAAGAATTCTAGATCTGAAGTAATGCATTATAGGTAC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCTAAACTGATGGAAGAATTCTAGATCTGAAGTAATGCATTATAGGTAC  300

seq1  ACTGGTCCACGTACTTTTGTGCACTTACCAATGTTTCATTATCTGTATTA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTGGTCCACGTACTTTTGTGCACTTACCAATGTTTCATTATCTGTATTA  350

seq1  CATGTTCTTCTTACCTTATGAGAAATAAGAGTTATATAAAGGAGGTTTTG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATGTTCTTCTTACCTTATGAGAAATAAGAGTTATATAAAGGAGGTTTTG  400

seq1  TTGTTCATAGCCTGTGCTCCTGATTATGTTGATGCCTTCAATTGTATGCC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGTTCATAGCCTGTGCTCCTGATTATGTTGATGCCTTCAATTGTATGCC  450

seq1  CACCTTCAAAGATTTTTCAAGTTGAATATATTAAACTGTGTGCAGTTTTT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACCTTCAAAGATTTTTCAAGTTGAATATATTAAACTGTGTGCAGTTTTT  500

seq1  GTAGCAAGATCAGCTCAATATGAATATTGTGTTTAGTGAGGGGCTGGTAA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTAGCAAGATCAGCTCAATATGAATATTGTGTTTAGTGAGGGGCTGGTAA  550

seq1  TAGTCATGCTCTATTAACAAACTTTATCTCCAAACTTCATTTTTCTGGGA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGTCATGCTCTATTAACAAACTTTATCTCCAAACTTCATTTTTCTGGGA  600

seq1  AGAGGTATATTTGTGTAGCTCATGGTGGCCTGGAATTTGCTGCAATGTAC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGGTATATTTGTGTAGCTCATGGTGGCCTGGAATTTGCTGCAATGTAC  650

seq1  AGATTGTCCTGAAAGTTATAATCCTTCTCCCTCAGCCTCATAATCATAGG  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGATTGTCCTGAAAGTTATAATCCTTCTCCCTCAGCCTCATAATCATAGG  700

seq1  CATTACATCATTATGATTCCCTTTTCAGATAGTGAAGTTATTTTAAAGTA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATTACATCATTATGATTCCCTTTTCAGATAGTGAAGTTATTTTAAAGTA  750

seq1  ATGACAAAAGCATTTTTCATTTGTCTGGAATAGTTCAAAGATGTTTTTGG  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGACAAAAGCATTTTTCATTTGTCTGGAATAGTTCAAAGATGTTTTTGG  800

seq1  AACTTTTTTCCTATCACAAAATATATTATGTAAAAAATGTAAATATATTA  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACTTTTTTCCTATCACAAAATATATTATGTAAAAAATGTAAATATATTA  850

seq1  ATCCTGACATAATGACAATCATCACATTTTACTATCACAGAGGGGTAAGA  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCCTGACATAATGACAATCATCACATTTTACTATCACAGAGGGGTAAGA  900

seq1  TTATATACATGATCTCTTTGTTATCTCCAAATTTGAAAAAAAAATAGTTA  950
      |||||||||||||||||||||||||| |||||||||||||||||||||||
seq2  TTATATACATGATCTCTTTGTTATCT-CAAATTTGAAAAAAAAATAGTTA  949

seq1  ATGATGAATAATAAAC-TGTGTCAGTTAAAGATGACCAGTCAGGATG-AA  998
      |||||||||||||||| |||||||||||||||||||||||||||||| ||
seq2  ATGATGAATAATAAACTTGTGTCAGTTAAAGATGACCAGTCAGGATGAAA  999

seq1  GGGTAAAAAAGGTTTCTGGAATACTTGGTCTTTTCATCTTTCTACCTTCA  1048
      |||||||||| ||||||||||||||| |||||||| || ||||||| |||
seq2  GGGTAAAAAA-GTTTCTGGAATACTTTGTCTTTTCTTC-TTCTACC-TCA  1046

seq1  TTCATCTGTCACTGAC-AATGCATGCA-CACC--ATGGTGTAGTTCCCAT  1094
       ||||||||||||||| |||||||||| ||||  ||||||||||| ||||
seq2  -TCATCTGTCACTGACAAATGCATGCACCACCATATGGTGTAGTT-CCAT  1094

seq1  GTCTGC  1100
      ||||||
seq2  GTCTGC  1100