BAC Information

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BAC

Clone NameB6Ng01-078G15
Chromosome6 (Build37)
Map Location 60,748,400 - 60,749,574
singlet/doubletsinglet
Overlap geneSnca
Upstream geneEG627108, EG434019, LOC671300, EG627178, LOC100041706, LOC100041717, A530053G22Rik, LOC667066, LOC100041726, ENSMUSG00000064018
Downstream geneMmrn1, LOC100041756, LOC100041764, C130092O11Rik, LOC100042694
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-078G15.bB6Ng01-078G15.g
ACCDH894118DH894119
length1,1491,231
definitionDH894118|Mus musculus domesticus DNA, BAC clone: B6Ng01-078G15, 5' end.DH894119|Mus musculus domesticus DNA, BAC clone: B6Ng01-078G15, 3' end.
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
gaattctaatttcttaaaaccacaccatatgcatacattatcacatagca
tatggatggtgccaaaatcttgggtctctttgccagatgctcttactgga
agtacaaggatttgtacttccttgagtcttggttttgatcaaggctctgt
agcaataatactgttttactttttccttctattaaataagtaacaacaga
ctcttaacaacctcaattctatttgccactgccagtaaaagtgagagtag
acagaagagcaagataaatttgtggaagatttagtgtcttagccttcatc
ttcatggctgcccaagagttaagaagtttgagatgattccactgtggaca
ggagaaaccagcactgcacagaatgtcgtgtgttaagacagactgaggaa
actctacctttcggttaatttttgaatttagtatgggaattcaacagaaa
ataagagaaagaggtattccatggagatgctatgctcattatcctggatc
taagaatacatcttaatcattcttgtatcttaggacaacatgctaagaca
ggtaaagtatgacactgttaaaaatctaggcatcaataggtcccgactaa
aggattatctctaccagctcatgtgaaatataactggatgaaatgatgcc
atagcatttcagcgcatcctaggacactgaacatcagccaggcacactga
aatgcacaaaaaccaaagatagaactcttgtggaaaactgtgttatagta
acagtgatgacttttaaaacacatttcaattatttcaaatataagaatta
agaaatttgtgcatctttcttttcaattatccaaaaagaaacacatagga
aagaaattgaggaaaacaaatttcaaattgagagaaaacttagaggaact
aacatgaaaagcccgtagaaaatgaaactttatatggaaactatagatat
gtaagcagtaggacatgagggcagctcttgtgaaacaccagacaacatta
tagcacttttttttctgactgatgtattttgaattattttccaagaaaaa
atggttctgattgccgaaaaaaaccaaacaaaaacaacacaaaactgccc
atgtgcaatgcagctgtctagttgttaatgctggtagaactgtaaaagt
gaattcaataactcacttaaagagatacaggagaacactgctaaagagtt
acaagtccttaaagaaaaacaggaaaacactgctaaagagttacaagtcc
ttaaagaaaaacaggaaaacacaaccaaacaggtagaagtccttatagaa
aaacaggaaaacacaatcaaacaggtgatggaaatgaacaaaaccatact
agacctaaaaatggaagtagacacaataaagaaaacccaaagtgaggcaa
cactggagatagaaaccctaggaaagaaatctggaaccatagatgccagc
atcagcaacagaatacaagagatggaagagagaatctcaggtgcagaaga
ctccatagagaacatcggcacaacaatcaaagaaaatggaaaatgcaaaa
agatcctaactaaaaacatccaggaaatccaggacacaatgagaagacca
aacctacggataataggagtggatgagaatgaagattttcaactcaaaag
accagcaaacatcttcaacaaaattattgaagaaaacttcccaaatctaa
agaaagagatgcccatgaacatacaagaagcctacagaactccaaataga
ctggaccagaaaagaaattcctcccgacacataataatcagaacatcaaa
tgcactaaataaagatagaatactaaaagcagtaagggaaaaaggtcaag
taacatataaaggcaagcctatcagaattacaccagatttttcaccagag
actatgaaagccagaagagcctggatagatgttatacagacactaagaga
acacaaatgccagcccaggctactatacccagccaaactctcaattacca
tagatggagaaaccaaagtattccacgacaaaactaaattcacccattat
ctctccacgaatccagctcttcaaaggataatacagaaaaaaccaataca
tgacgggaacacgccctagaaaaaacagagataatccctcaacaaaccta
aaagaagacagccacagaacagaatgcacgttaacaacaaaaataaagga
agcaacattacgtttcttaatatctctaatattcatggactcatccccat
aaatgactagactaacagactggctatcacaaacagatcaacatttctgc
tgcttacggaaccatcttataaaagacgaacctatccctaaagtaggctg
aacattctcagcaaagtctgagaaaacaggc
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr6_60748400_60749574
seq2: B6Ng01-078G15.b_34_1182

seq1  GAATTCTAATTTCTTAAAACCACACCATATGCATACATTATCACATAGCA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTAATTTCTTAAAACCACACCATATGCATACATTATCACATAGCA  50

seq1  TATGGATGGTGCCAAAATCTTGGGTCTCTTTGCCAGATGCTCTTACTGGA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATGGATGGTGCCAAAATCTTGGGTCTCTTTGCCAGATGCTCTTACTGGA  100

seq1  AGTACAAGGATTTGTACTTCCTTGAGTCTTGGTTTTGATCAAGGCTCTGT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTACAAGGATTTGTACTTCCTTGAGTCTTGGTTTTGATCAAGGCTCTGT  150

seq1  AGCAATAATACTGTTTTACTTTTTCCTTCTATTAAATAAGTAACAACAGA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCAATAATACTGTTTTACTTTTTCCTTCTATTAAATAAGTAACAACAGA  200

seq1  CTCTTAACAACCTCAATTCTATTTGCCACTGCCAGTAAAAGTGAGAGTAG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTTAACAACCTCAATTCTATTTGCCACTGCCAGTAAAAGTGAGAGTAG  250

seq1  ACAGAAGAGCAAGATAAATTTGTGGAAGATTTAGTGTCTTAGCCTTCATC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAGAAGAGCAAGATAAATTTGTGGAAGATTTAGTGTCTTAGCCTTCATC  300

seq1  TTCATGGCTGCCCAAGAGTTAAGAAGTTTGAGATGATTCCACTGTGGACA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCATGGCTGCCCAAGAGTTAAGAAGTTTGAGATGATTCCACTGTGGACA  350

seq1  GGAGAAACCAGCACTGCACAGAATGTCGTGTGTTAAGACAGACTGAGGAA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAGAAACCAGCACTGCACAGAATGTCGTGTGTTAAGACAGACTGAGGAA  400

seq1  ACTCTACCTTTCGGTTAATTTTTGAATTTAGTATGGGAATTCAACAGAAA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTCTACCTTTCGGTTAATTTTTGAATTTAGTATGGGAATTCAACAGAAA  450

seq1  ATAAGAGAAAGAGGTATTCCATGGAGATGCTATGCTCATTATCCTGGATC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAAGAGAAAGAGGTATTCCATGGAGATGCTATGCTCATTATCCTGGATC  500

seq1  TAAGAATACATCTTAATCATTCTTGTATCTTAGGACAACATGCTAAGACA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAGAATACATCTTAATCATTCTTGTATCTTAGGACAACATGCTAAGACA  550

seq1  GGTAAAGTATGACACTGTTAAAAATCTAGGCATCAATAGGTCCCGACTAA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTAAAGTATGACACTGTTAAAAATCTAGGCATCAATAGGTCCCGACTAA  600

seq1  AGGATTATCTCTACCAGCTCATGTGAAATATAACTGGATGAAATGATGCC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGATTATCTCTACCAGCTCATGTGAAATATAACTGGATGAAATGATGCC  650

seq1  ATAGCATTTCAGCGCATCCTAGGACACTGAACATCAGCCAGGCACACTGA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAGCATTTCAGCGCATCCTAGGACACTGAACATCAGCCAGGCACACTGA  700

seq1  AATGCACAAAAACCAAAGATAGAACTCTTGTGGAAAACTGTGTTATAGTA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATGCACAAAAACCAAAGATAGAACTCTTGTGGAAAACTGTGTTATAGTA  750

seq1  ACAGTGATGACTTTTAAAACACATTTCAATTATTTCAAATATAAGAATTA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAGTGATGACTTTTAAAACACATTTCAATTATTTCAAATATAAGAATTA  800

seq1  AGAAA-TTGTGCATCTT--CTTTCAATTATCCAAAAAGAAACACATAGGA  847
      ||||| |||||||||||   ||||||||||||||||||||||||||||||
seq2  AGAAATTTGTGCATCTTTCTTTTCAATTATCCAAAAAGAAACACATAGGA  850

seq1  AAGAAATTGAGGAAAACAAATTTCAAATTGAGAGAAAACTTAGAGGAACT  897
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGAAATTGAGGAAAACAAATTTCAAATTGAGAGAAAACTTAGAGGAACT  900

seq1  AACATGAAAAGCCCGTAGAAAATGAAACTTTATATGGAAACTATAGATAT  947
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACATGAAAAGCCCGTAGAAAATGAAACTTTATATGGAAACTATAGATAT  950

seq1  GTAAGCAGTAGGACATGAGGGCAGCTCTTGTGAAACACCAGACAAACATT  997
      ||||||||||||||||||||||||||||||||||||||||||| ||||||
seq2  GTAAGCAGTAGGACATGAGGGCAGCTCTTGTGAAACACCAGAC-AACATT  999

seq1  ATAAGCACTTTTTTTTCTGACTGAATGTATTTTGAAATTAATTTTCCAAG  1047
      || |||||||||||||||||||| ||||||||||||  | ||||||||||
seq2  AT-AGCACTTTTTTTTCTGACTG-ATGTATTTTGAA--TTATTTTCCAAG  1045

seq1  AAAAAATGGTTCTGATTGCAGAAAAAAA--AAACAAAAACAAAAAACAAA  1095
      ||||||||||||||||||| ||||||||  ||||||||||         |
seq2  AAAAAATGGTTCTGATTGCCGAAAAAAACCAAACAAAAAC---------A  1086

seq1  ACACAAAAAAAACCTGCCCATGTGCACATGCAGCCTGTCTTAGGTTTGGT  1145
      ||||||||     ||||||||||||| |||||| ||||| |||   | ||
seq2  ACACAAAA-----CTGCCCATGTGCA-ATGCAG-CTGTC-TAG---TTGT  1125

seq1  TAAAATGCTGGGTAAAGAACATGTAAAAGT  1175
      |  ||||||||    ||||| |||||||||
seq2  T--AATGCTGG---TAGAAC-TGTAAAAGT  1149