BAC Information

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BAC

Clone NameB6Ng01-078L19
Chromosome8 (Build37)6 (Build37)
Map Location 123,860,762 - 123,860,85137,481,122 - 37,482,283
singlet/doubletsingletsinglet
Overlap genenone
Upstream geneGse1, 4833427B12Rik, LOC668301, 1190005I06Rik, Cox4nb, Cox4i1, Irf8, LOC100042333, Foxf1a, Mthfsd, Foxc2, Foxl1
Downstream gene1700018B08Rik, Fbxo31, Map1lc3b, Zcchc14, Jph3, Klhdc4, Slc7a5, BC048644, Car5a, Banp, Gm22, Zfpm1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-078L19.bB6Ng01-078L19.g
ACCDH894354DH894355
length1261,164
definitionDH894354|Mus musculus domesticus DNA, BAC clone: B6Ng01-078L19, 5' end.DH894355|Mus musculus domesticus DNA, BAC clone: B6Ng01-078L19, 3' end.
singlet/doubletsingletsinglet
BLAST hituniqueunique
Map location.(123,860,762 - 123,860,851)(37,481,122 - 37,482,283)
sequence
tcagctcctccagtaccatgtctgcctacagcttgccatgcttcctgcca
tgatgagaatagactgaacctctgaaattgtaagtcagccccaattaaat
attgttctttataagagttgccttgg
gaattcacataccgcttccccaccccccatcccccacccccactcccccg
gcactcacataaaaagccaggcatggtggcttgtgcctctgactctagct
ctatgtagggaatgacaggcagattccatttcctcattggccagccagtc
tagtcaagacctagaactccagattctcctgttcttccatagagtcccca
agcttcacctactgtttgactgtggatgtctgcatctgtctgagctagct
gctgggtggagcctctcagaagacagccgtgctagattcctgtctgcaag
cataatagagcatcattaatagtggcagggattggtgcttgaccatgaga
tgggtctcaagttgggctggctattttttaaagatagggtcttacactga
tcctagagctcactagctgctacagtggccgaccaatgagctccaaggat
gcttgtctctgctcctcaagccagcactgtggatacagactcaccccttc
atgtgtagcttttatgtgggtgctggggatccaagttcaggccttcaagt
tactatggcatgcagtttaccaactgagccatctcgaagccccctatagt
aaactttgaagggtcaaatcaaaggatacctcttcccactcacaacatcc
taattcccacatgttcacacatggtctcctgtcctactgacactccataa
tctttctcactagcctgagaagtttattagaaaagaccgttgcttgttca
actctagagtctcatgacaatgccttgtatgtaatgctttgttcaaatag
tgctttattaaactaatgggaaaagtttgtgagagggatgtgtacattag
acaatatgggagatataataaatttaaaaaataatagctaaaagtgttct
aaacacctaactatgtgcctggaactctgtgcatgttttgtagcacatgc
attttctaacataattctcacattgcaaagccaataccagttaagcccac
tgacagatggggaaagagagatgagcatagagagactgaacccatcactt
ccagggttagactgccagtcccaggtttgaaatgtgagaccaaatctatc
catgtccgactttggtctctgcacaattgctttgcaagccggtaaatcac
attttctgaagctc
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr8_123860762_123860851
seq2: B6Ng01-078L19.b_83_175

seq1  TGCCATGCTTCCTGCCATGAT---AATGGACTGAACCACTGAAACTGTAA  47
      |||||||||||||||||||||   ||| ||||||||| |||||| |||||
seq2  TGCCATGCTTCCTGCCATGATGAGAATAGACTGAACCTCTGAAATTGTAA  50

seq1  GCCAGCCCCCAATTAAATGCTG-TCCTTATAAGAGTTGCCTTGG  90
      | ||| ||||||||||||  || || ||||||||||||||||||
seq2  GTCAG-CCCCAATTAAATATTGTTCTTTATAAGAGTTGCCTTGG  93

seq1: chr6_37481122_37482283
seq2: B6Ng01-078L19.g_70_1233

seq1  GAATTCACATACCGCTTCCCCACCCCCCATCCCCCACCCCCACTCCCCCG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCACATACCGCTTCCCCACCCCCCATCCCCCACCCCCACTCCCCCG  50

seq1  GCACTCACATAAAAAGCCAGGCATGGTGGCTTGTGCCTCTGACTCTAGCT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCACTCACATAAAAAGCCAGGCATGGTGGCTTGTGCCTCTGACTCTAGCT  100

seq1  CTATGTAGGGAATGACAGGCAGATTCCATTTCCTCATTGGCCAGCCAGTC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTATGTAGGGAATGACAGGCAGATTCCATTTCCTCATTGGCCAGCCAGTC  150

seq1  TAGTCAAGACCTAGAACTCCAGATTCTCCTGTTCTTCCATAGAGTCCCCA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGTCAAGACCTAGAACTCCAGATTCTCCTGTTCTTCCATAGAGTCCCCA  200

seq1  AGCTTCACCTACTGTTTGACTGTGGATGTCTGCATCTGTCTGAGCTAGCT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCTTCACCTACTGTTTGACTGTGGATGTCTGCATCTGTCTGAGCTAGCT  250

seq1  GCTGGGTGGAGCCTCTCAGAAGACAGCCGTGCTAGATTCCTGTCTGCAAG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTGGGTGGAGCCTCTCAGAAGACAGCCGTGCTAGATTCCTGTCTGCAAG  300

seq1  CATAATAGAGCATCATTAATAGTGGCAGGGATTGGTGCTTGACCATGAGA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATAATAGAGCATCATTAATAGTGGCAGGGATTGGTGCTTGACCATGAGA  350

seq1  TGGGTCTCAAGTTGGGCTGGCTATTTTTTAAAGATAGGGTCTTACACTGA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGGTCTCAAGTTGGGCTGGCTATTTTTTAAAGATAGGGTCTTACACTGA  400

seq1  TCCTAGAGCTCACTAGCTGCTACAGTGGCCGACCAATGAGCTCCAAGGAT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCTAGAGCTCACTAGCTGCTACAGTGGCCGACCAATGAGCTCCAAGGAT  450

seq1  GCTTGTCTCTGCTCCTCAAGCCAGCACTGTGGATACAGACTCACCCCTTC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTTGTCTCTGCTCCTCAAGCCAGCACTGTGGATACAGACTCACCCCTTC  500

seq1  ATGTGTAGCTTTTATGTGGGTGCTGGGGATCCAAGTTCAGGCCTTCAAGT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGTGTAGCTTTTATGTGGGTGCTGGGGATCCAAGTTCAGGCCTTCAAGT  550

seq1  TACTATGGCATGCAGTTTACCAACTGAGCCATCTCGAAGCCCCCTATAGT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACTATGGCATGCAGTTTACCAACTGAGCCATCTCGAAGCCCCCTATAGT  600

seq1  AAACTTTGAAGGGTCAAATCAAAGGATACCTCTTCCCACTCACAACATCC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAACTTTGAAGGGTCAAATCAAAGGATACCTCTTCCCACTCACAACATCC  650

seq1  TAATTCCCACATGTTCACACATGGTCTCCTGTCCTACTGACACTCCATAA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAATTCCCACATGTTCACACATGGTCTCCTGTCCTACTGACACTCCATAA  700

seq1  TCTTTCTCACTAGCCTGAGAAGTTTATTAGAAAAGACCGTTGCTTGTTCA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTTCTCACTAGCCTGAGAAGTTTATTAGAAAAGACCGTTGCTTGTTCA  750

seq1  ACTCTAGAGTCTCATGACAATGCCTTGTATGTAATGC-TTGTTCAAATAG  799
      ||||||||||||||||||||||||||||||||||||| ||||||||||||
seq2  ACTCTAGAGTCTCATGACAATGCCTTGTATGTAATGCTTTGTTCAAATAG  800

seq1  TGC-TTATTAAACTAAT-GGAAAAGTTTGTGAGAGGGATGTGTACATTAG  847
      ||| ||||||||||||| ||||||||||||||||||||||||||||||||
seq2  TGCTTTATTAAACTAATGGGAAAAGTTTGTGAGAGGGATGTGTACATTAG  850

seq1  ACAATAT-GGAGATATAAATAAATTTAAAAAAATAATAGCTAAAAGTGTT  896
      ||||||| |||||||| ||||||||| |||||||||||||||||||||||
seq2  ACAATATGGGAGATAT-AATAAATTT-AAAAAATAATAGCTAAAAGTGTT  898

seq1  CTAAACACCTAACTATGTGCCTGGAACTCTGTGCATGTTTTGTAGCACAT  946
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAAACACCTAACTATGTGCCTGGAACTCTGTGCATGTTTTGTAGCACAT  948

seq1  GCATTTTCTAACATAATCCTCACATTGCAAAGCCAATACCAGTTAAGCCC  996
      ||||||||||||||||| ||||||||||||||||||||||||||||||||
seq2  GCATTTTCTAACATAATTCTCACATTGCAAAGCCAATACCAGTTAAGCCC  998

seq1  ACTGACAGATGGGGAAAGAGAGATGAGCATAGAGAGACTGAACCCATCAC  1046
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTGACAGATGGGGAAAGAGAGATGAGCATAGAGAGACTGAACCCATCAC  1048

seq1  -TCCA-GGTTAGACTGCCAAGGCCCAGGGTTGAAATGTGAGCCAATATC-  1093
       |||| |||||||||||| || |||||| |||||||||||| | | ||| 
seq2  TTCCAGGGTTAGACTGCC-AGTCCCAGGTTTGAAATGTGAGACCAAATCT  1097

seq1  ATTCATGTCCAGACCTTGGTCTCTGCAC-ATTGCTTTGGCAATGCCGGTT  1142
      || ||||||| ||| ||||||||||||| |||||||| |||| ||||| |
seq2  ATCCATGTCC-GACTTTGGTCTCTGCACAATTGCTTT-GCAA-GCCGG-T  1143

seq1  AAATCACA-TTTCTGAAGCTC  1162
      |||||||| ||||||||||||
seq2  AAATCACATTTTCTGAAGCTC  1164