BAC Information

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BAC

Clone NameB6Ng01-078O03
Chromosome6 (Build37)
Map Location 79,306,192 - 79,307,335
singlet/doubletsinglet
Overlap genenone
Upstream genePap, Reg3d, Reg3a, Reg2, Reg1, Reg3g, LOC621716, Ppia-ps6_789.1, LOC384440
Downstream geneLOC621815, LOC100043392, Lrrtm4
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-078O03.bB6Ng01-078O03.g
ACCDH894462DH894463
length1,2191,140
definitionDH894462|Mus musculus domesticus DNA, BAC clone: B6Ng01-078O03, 5' end.DH894463|Mus musculus domesticus DNA, BAC clone: B6Ng01-078O03, 3' end.
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
gaattctctggtagaatttttagggtcacttatatatactatcatatcat
ctgcaaaaagtgatattttgacttcctcttttccaatttgtatccccttg
atctccttttgttgtcgaattgctctggctaatacttcaagtactatgtt
gaaaaggtagggagaaagtgggcagccttgtctagtccctgattttagtg
ggattgcttccagcttctctccatttactttgatgttggctactggtttg
ctgtagattggttttatcatgtttaggtatgggctttgaattcctgatct
ttccaaaacttttatcatgaatgggtgttggatcttgtcaaatgcttttt
ctgcatctaacgagatgatcatgtggtttttgtctttcagtttgtttata
taatggattacattgatggattttcatatattaaaccatccctgcatccc
tggaataaaacctacttggtcaagatggatgattgctttaatgtgttctt
ggatttggttagcgagaattttattgaggattattgcatcgatattcata
aaagaaattggtctgaagttctctatctttgttgcgtctttctgtggttt
aggtatcagagtaatagtggtttcataaaatgagttgggtagagtacctt
ctacttctattttgtgaaatagtttgtgcagaactggaatagatcttctt
tgaaggactgatatagctctgaactaaacccgtctggtcctgggcttttt
ttggcctggagactattaataactgcttctatttctttaggggatatggg
actgtttagatgatcaacttgatcctgattcaactttggtacctggtatc
tgtccagaaatttgtccatttcgtccaggttttccagttttgttgagtat
accttttgtagaagatctgatggtgttttggatttcttgaggatctgttg
ttatgtctccttttcatttctgatttgttattaggatttgtccctgtgcc
ctttagtgagtctagctaggtttatctatcttgttgattttctccaaaac
aactcctgttggtaattcttgaatagttgttcttgttcccttggtgattt
cacccggaggtgattattcggcactccctcctcttgggaattgctccttt
tttcagctaagtggatgagtggccaaggcgcgcgatataaatggctctct
cctgttctctgggaggcac
gaattctcttcttgaaagtctgtgatcaggacatataagctaaaataaac
cttttcttcttcccttcccccacccccaaaaagaaaggagacaaatgtgg
cccataggaaaatggcattttataaaggtacaaaaggaaaccctatatta
ggatgagatatttcattttagtttggcatattaattaggtaagtcccagc
aggacttttcattgttagactttaatactttgatagctagaccttggtag
ttggtctcaggaggagaaagtggccaaataaggaaatagaccttcatggt
tagctttaggaagataatctcatggttttaatcaaggcaaggtaattggg
aagaaggaaaaggaagaaaggcatatgcttgcgtgagctactgtcccatc
atattttgcaatttattttgataattcctagacttttgcctgcaattcta
agtagtaatatccttttaaacgtgattattagaacctttgtgttttaagt
gttctcactaattgccacacaattatgagaaatttaatgttgaatgttct
ttctttttttcatatttccaggacatttttcaagtatttaatttgtaaat
atttagtgtatgtatgacagaaataaagcaagaaggaaggcaggcagaaa
ggaagcggaatggagggagaaaggaacaaaagcaagacagaaagaaaggc
aattagtagttggaaccattcacatgtagagaaaatacacgacctgattt
caatgtatcttaaatatattgtaacccaaaaataaatgtgaaacaatgaa
cattttgttcaaaacatttatctgaacacagcattaaaataatactcttc
agaaatactatttattctctacactataacacatattgtaattttcacct
attgttttctggagagaagttattgtctgcttaaagtattttcaactact
agttatttagtaagtcttatgcctatactttatttttatcacttattctg
cacatatctagagtaggtgttaaatggataagtttcattgttaatttaag
tatatataatcatgcaaggtgaacattaccagccttgttggacatttagg
aaattaaattatgcgactattcttgagtgggttataattt
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr6_79306192_79307335
seq2: B6Ng01-078O03.g_69_1208 (reverse)

seq1  AAATTATAACCAACTCAAGAATAAGTCGCATATATTATAATCCTAAATGT  50
      ||||||||||| |||||||||| |||||||||  |||   ||||||||||
seq2  AAATTATAACCCACTCAAGAAT-AGTCGCATAATTTAATTTCCTAAATGT  49

seq1  TCAACAAGGCTGGTAATG-TCA-CTTGCATGATTAATTATATACTTAAAT  98
       ||||||||||||||||| ||| ||||||||||||  |||||||||||| 
seq2  CCAACAAGGCTGGTAATGTTCACCTTGCATGATTA--TATATACTTAAA-  96

seq1  TTAACAATGAGAACTATTCATTTAACACCTACTCTAGATATGTGCAGAAT  148
      |||||||||| |  ||| ||||||||||||||||||||||||||||||||
seq2  TTAACAATGAAACTTATCCATTTAACACCTACTCTAGATATGTGCAGAAT  146

seq1  AAGTGATAAAAATAAAGTATAGGCATAAGACTTACTAAATAACTAGTAGT  198
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGTGATAAAAATAAAGTATAGGCATAAGACTTACTAAATAACTAGTAGT  196

seq1  TGAAAATACTTTTAAGCAGACAATAACTTCTCTCCAGAAAACAATAGGTG  248
      ||||||||| ||||||||||||||||||||||||||||||||||||||||
seq2  TGAAAATAC-TTTAAGCAGACAATAACTTCTCTCCAGAAAACAATAGGTG  245

seq1  AAAATTACAATATGTGTTATAGTGTAGAGAATAAATAGTATTTCTGAAGA  298
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAATTACAATATGTGTTATAGTGTAGAGAATAAATAGTATTTCTGAAGA  295

seq1  GTATTATTTTAATGCTGTGTTCAGATAAATGTTTTTGAACAAAATGTTCA  348
      ||||||||||||||||||||||||||||||| ||||||||||||||||||
seq2  GTATTATTTTAATGCTGTGTTCAGATAAATG-TTTTGAACAAAATGTTCA  344

seq1  TTGTTTCACATTTATTTTTGGGTTACAATATATTTAAGATACATTGAAAT  398
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGTTTCACATTTATTTTTGGGTTACAATATATTTAAGATACATTGAAAT  394

seq1  CAGGTCGTGTATTTTCTCTACATGTGAATGGTTCCAACTACTAATTGCCT  448
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGGTCGTGTATTTTCTCTACATGTGAATGGTTCCAACTACTAATTGCCT  444

seq1  TTCTTTCTGTCTTGCTTTTGTTCCTTTCTCCCTCCATTCCGCTTCCTTTC  498
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTTTCTGTCTTGCTTTTGTTCCTTTCTCCCTCCATTCCGCTTCCTTTC  494

seq1  TGCCTGCCTTCCTTCTTGCTTTATTTCTGTCATACATACACTAAATATTT  548
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCCTGCCTTCCTTCTTGCTTTATTTCTGTCATACATACACTAAATATTT  544

seq1  ACAAATTAAATACTTGAAAAATGTCCTGGAAATATGAAAAAAAGAAAGAA  598
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAAATTAAATACTTGAAAAATGTCCTGGAAATATGAAAAAAAGAAAGAA  594

seq1  CATTCAACATTAAATTTCTCATAATTGTGTGGCAATTAGTGAGAACACTT  648
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATTCAACATTAAATTTCTCATAATTGTGTGGCAATTAGTGAGAACACTT  644

seq1  AAAACACAAAGGTTCTAATAATCACGTTTAAAAGGATATTACTACTTAGA  698
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAACACAAAGGTTCTAATAATCACGTTTAAAAGGATATTACTACTTAGA  694

seq1  ATTGCAGGCAAAAGTCTAGGAATTATCAAAATAAATTGCAAAATATGATG  748
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTGCAGGCAAAAGTCTAGGAATTATCAAAATAAATTGCAAAATATGATG  744

seq1  GGACAGTAGCTCACGCAAGCATATGCCTTTCTTCCTTTTCCTTCTTCCCA  798
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGACAGTAGCTCACGCAAGCATATGCCTTTCTTCCTTTTCCTTCTTCCCA  794

seq1  ATTACCTTGCCTTGATTAAAACCATGAGATTATCTTCCTAAAGCTAACCA  848
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTACCTTGCCTTGATTAAAACCATGAGATTATCTTCCTAAAGCTAACCA  844

seq1  TGAAGGTCTATTTCCTTATTTGGCCACTTTCTCCTCCTGAGACCAACTAC  898
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAAGGTCTATTTCCTTATTTGGCCACTTTCTCCTCCTGAGACCAACTAC  894

seq1  CAAGGTCTAGCTATCAAAGTATTAAAGTCTAACAATGAAAAGTCCTGCTG  948
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAGGTCTAGCTATCAAAGTATTAAAGTCTAACAATGAAAAGTCCTGCTG  944

seq1  GGACTTACCTAATTAATATGCCAAACTAAAATGAAATATCTCATCCTAAT  998
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGACTTACCTAATTAATATGCCAAACTAAAATGAAATATCTCATCCTAAT  994

seq1  ATAGGGTTTCCTTTTGTACCTTTATAAAATGCCATTTTCCTATGGGCCAC  1048
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAGGGTTTCCTTTTGTACCTTTATAAAATGCCATTTTCCTATGGGCCAC  1044

seq1  ATTTGTCTCCTTTCTTTTTGGGGGTGGGGGAAGGGAAGAAGAAAAGGTTT  1098
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTGTCTCCTTTCTTTTTGGGGGTGGGGGAAGGGAAGAAGAAAAGGTTT  1094

seq1  ATTTTAGCTTATATGTCCTGATCACAGACTTTCAAGAAGAGAATTC  1144
      ||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTTAGCTTATATGTCCTGATCACAGACTTTCAAGAAGAGAATTC  1140