BAC Information

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BAC

Clone NameB6Ng01-078O14
Chromosome6 (Build37)
Map Location 39,998,822 - 40,142,860
singlet/doubletdoublet
Overlap geneEG434008
Upstream geneTbxas1, 1700025N23Rik, Parp12, 4930599N23Rik, A630082K20Rik, Slc37a3, Rab19, Mkrn1, ENSMUSG00000068601, Dennd2a, Adck2, Ndufb2, Braf, Fth-ps2, Mrps33, LOC665247, LOC665254
Downstream geneAgk, E330009J07Rik, BC052883, Ssbp1, Tas2r137, Tas2r108, 1700016G05Rik, LOC669661, Olfr461, Olfr460, Clec5a, Tas2r138, Mgam, EG638904, Moxd2, LOC621968, BC048599, 1700074P13Rik, LOC194360, 1810009J06Rik, LOC100040208, 2210010C04Rik, LOC100039790, Tcrb-V8.2
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-078O14.bB6Ng01-078O14.g
ACCDH894484DH894485
length1,1691,111
definitionDH894484|Mus musculus domesticus DNA, BAC clone: B6Ng01-078O14, 5' end.DH894485|Mus musculus domesticus DNA, BAC clone: B6Ng01-078O14, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(40,141,689 - 40,142,860)(39,998,822 - 39,999,935)
sequence
gaattcagtctacaatgctggatctctcagatcattttcagtatacactg
gagtcctgaagaagtaggctgtaatgccagtgaaggaatggacttgctaa
tgaaagtaggagcaagcaggcagaagagagtaagctttccttcttccatg
tcctttatctaggctaccagtggccagattaaaatctggatcttcccatc
tcaaaagatctgcattaaaggtgtatcttctaacctcaagagttacagat
taaaagtgggtcttcccacttcaaatgatttaattaataataaaaaatta
taaataattaattaataataaaaaaaatccctcacaggtgtacctaacct
cttgggttttagtcaattccaaatgtagtcatgttgacaaccaggaacag
ccaccacagatggggaaggtgccagctctttcttcccttgaggttgctag
ttgtaagagtcccttgtcctgctgtcacactggtgtcttctggcaccatt
cagtcactgaagactaaggctacgcttctcttcttctcctcactcaaaca
tccagtgcctaacagataatctagttctccacagaacgatgggaacacaa
atgagtaggagtctacagtctctcttctggacagtcacttagtgaggaag
gtggtgttgacacttacctggcacctgtcttatgccaggctgcactgaca
ttgcacacacagtacacacagctcactctgagctaggcaagtggatgctg
tttcaatctgtttgaccgaacagtaatgcctaatggttttcttgtttcta
gtttcaaaggtttgccattttctgagttttcctttctattctctagctgg
aaacatttttcatgcttcacatgtagtcagccacttttgaattttgctgg
tgtcctgcagttgagtcttttgttaagtaaatattttttatgtccttcac
gtcttgttgtacaagaaacaagcatctccatccctttgtccccgtgtaag
ccaatcttctcctttaaccctccctatagtctttggctcagtagcagcta
ttgaagcccccgctgagaaagacctcactaattgaggacaagtcattggc
agaataatgcaaacctcaaacaaaaatggaaaaacttcggcagactcttt
tttttttccgtcaggtaac
gaattctaggtgagtgttaagacttaacaggtagaagtcagagccattgt
ttgcagggaaagtggcagatggtgtgttggtagaacttctggtggtggga
aataggtcagcctagacagagacctatggatggatatggatggaaatccc
aagcacaggcatggccagtcatacagggctctgcagctaatacattagga
tgtggggtgggggtggcacatctcaaactgaaaaagtgcctgggagccgg
gaatgaatgtgattgccatcatgactttcatagtgaggggagctcctgac
ctgtcctaggctctctgccaggttctccaattcctaccatacccagagca
gacacgagtgctggagatgcaggctcagtgtacaacctgcctttctactc
ttctctcttctgtcaacctaacagcagaaatggcctgttttgagcggcaa
ccttcacagaattttagccctttaaacctggaagaaaccgcagtaggctt
ttagcctctgattccaacttaaggtattgttgtctttagtctcacatgct
gcagaagctggaggagagccttagagacttaggctgcgggaacctcaagg
gagctagctccgagtgcatccatttccctcccctactgtacagacaaagg
aaccatacccagcacaggggtcgtccaaggagagagggtagtaataccca
aactggaatcagttttgcaagccaaaggctgttttgtaccgacaccagag
cttcaagccaccttaaaaacacacacgcagagaaaaacaaacagtctcac
ctagtgaatccattggatttgcatacttctcttggggttcagcaaatgcc
cacatgctcggctctggttttaagtagatactgtagagaaatcacatcag
gtgctctctttctcctctgcttgctcttggtgctgattttctgaaaccga
accgacatttgggcaagaaatgacttcaattaatggagcatgcatgtgat
tgctttagaaaaaccaagaggaaccattactctttttctttcaagagcta
aaaacaatccatggggggaacattctctctggtctctctctaggtttctc
ttgacctacac
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr6_40141689_40142860
seq2: B6Ng01-078O14.b_48_1216 (reverse)

seq1  GTTACCTTAACTGGAAAAAAAAAAGAGTTTTGCCCAAATGTCTCTCATTT  50
      ||||||| |   ||||||||||||||| | |||| || | | || |||||
seq2  GTTACCTGA--CGGAAAAAAAAAAGAG-TCTGCCGAAGTTTTTC-CATTT  46

seq1  TTGTTTTGAGTTTGCATGTATCTGCCAATGACCTTGTCCTC-ATTAGTGA  99
      ||||||   ||||||||   ||||||||||| ||||||||| ||||||||
seq2  TTGTTTGAGGTTTGCATTATTCTGCCAATGA-CTTGTCCTCAATTAGTGA  95

seq1  GTGTCTTCTTCAAGCGGGGGCTTCAATAGCTGCTACTGAG-CAAAGACAA  148
      | |||||  || |||||||||||||||||||||||||||| ||||||| |
seq2  G-GTCTTTCTC-AGCGGGGGCTTCAATAGCTGCTACTGAGCCAAAGACTA  143

seq1  TAGGGAGGGTTAAAGGAG-AGATTGGCTTACACGGGGACAAAGGGATGGA  197
      |||||||||||||||||| |||||||||||||||||||||||||||||||
seq2  TAGGGAGGGTTAAAGGAGAAGATTGGCTTACACGGGGACAAAGGGATGGA  193

seq1  GATGCTTGTTTCTTGTACAACAAGACGTGAAGGACAT-AAAAATATTTAC  246
      ||||||||||||||||||||||||||||||||||||| ||||||||||||
seq2  GATGCTTGTTTCTTGTACAACAAGACGTGAAGGACATAAAAAATATTTAC  243

seq1  TTAACAAAAGACTCAACTGCAGGACACCAGCAAAATTCAAAAGTGGCTGA  296
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAACAAAAGACTCAACTGCAGGACACCAGCAAAATTCAAAAGTGGCTGA  293

seq1  CTACATGTGAAGCATGAAAAATGTTTCCAGCTAGAGAATAGAAAGGAAAA  346
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTACATGTGAAGCATGAAAAATGTTTCCAGCTAGAGAATAGAAAGGAAAA  343

seq1  CTCAGAAAATGGCAAACCTTTGAAACTAGAAACAAGAAAACCATTAGGCA  396
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCAGAAAATGGCAAACCTTTGAAACTAGAAACAAGAAAACCATTAGGCA  393

seq1  TTACTGTTCGGTCAAACAGATTGAAACAGCATCCACTTGCCTAGCTCAGA  446
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTACTGTTCGGTCAAACAGATTGAAACAGCATCCACTTGCCTAGCTCAGA  443

seq1  GTGAGCTGTGTGTACTGTGTGTGCAATGTCAGTGCAGCCTGGCATAAGAC  496
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGAGCTGTGTGTACTGTGTGTGCAATGTCAGTGCAGCCTGGCATAAGAC  493

seq1  AGGTGCCAGGTAAGTGTCAACACCACCTTCCTCACTAAGTGACTGTCCAG  546
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGTGCCAGGTAAGTGTCAACACCACCTTCCTCACTAAGTGACTGTCCAG  543

seq1  AAGAGAGACTGTAGACTCCTACTCATTTGTGTTCCCATCGTTCTGTGGAG  596
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGAGAGACTGTAGACTCCTACTCATTTGTGTTCCCATCGTTCTGTGGAG  593

seq1  AACTAGATTATCTGTTAGGCACTGGATGTTTGAGTGAGGAGAAGAAGAGA  646
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACTAGATTATCTGTTAGGCACTGGATGTTTGAGTGAGGAGAAGAAGAGA  643

seq1  AGCGTAGCCTTAGTCTTCAGTGACTGAATGGTGCCAGAAGACACCAGTGT  696
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCGTAGCCTTAGTCTTCAGTGACTGAATGGTGCCAGAAGACACCAGTGT  693

seq1  GACAGCAGGACAAGGGACTCTTACAACTAGCAACCTCAAGGGAAGAAAGA  746
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACAGCAGGACAAGGGACTCTTACAACTAGCAACCTCAAGGGAAGAAAGA  743

seq1  GCTGGCACCTTCCCCATCTGTGGTGGCTGTTCCTGGTTGTCAACATGACT  796
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTGGCACCTTCCCCATCTGTGGTGGCTGTTCCTGGTTGTCAACATGACT  793

seq1  ACATTTGGAATTGACTAAAACCCAAGAGGTTAGGTACACCTGTGAGGGAT  846
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACATTTGGAATTGACTAAAACCCAAGAGGTTAGGTACACCTGTGAGGGAT  843

seq1  TTTTTTTATTATTAATTAATTATTTATAATTTTTTATTATTAATTAAATC  896
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTTTTATTATTAATTAATTATTTATAATTTTTTATTATTAATTAAATC  893

seq1  ATTTGAAGTGGGAAGACCCACTTTTAATCTGTAACTCTTGAGGTTAGAAG  946
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTGAAGTGGGAAGACCCACTTTTAATCTGTAACTCTTGAGGTTAGAAG  943

seq1  ATACACCTTTAATGCAGATCTTTTGAGATGGGAAGATCCAGATTTTAATC  996
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATACACCTTTAATGCAGATCTTTTGAGATGGGAAGATCCAGATTTTAATC  993

seq1  TGGCCACTGGTAGCCTAGATAAAGGACATGGAAGAAGGAAAGCTTACTCT  1046
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGCCACTGGTAGCCTAGATAAAGGACATGGAAGAAGGAAAGCTTACTCT  1043

seq1  CTTCTGCCTGCTTGCTCCTACTTTCATTAGCAAGTCCATTCCTTCACTGG  1096
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTCTGCCTGCTTGCTCCTACTTTCATTAGCAAGTCCATTCCTTCACTGG  1093

seq1  CATTACAGCCTACTTCTTCAGGACTCCAGTGTATACTGAAAATGATCTGA  1146
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATTACAGCCTACTTCTTCAGGACTCCAGTGTATACTGAAAATGATCTGA  1143

seq1  GAGATCCAGCATTGTAGACTGAATTC  1172
      ||||||||||||||||||||||||||
seq2  GAGATCCAGCATTGTAGACTGAATTC  1169

seq1: chr6_39998822_39999935
seq2: B6Ng01-078O14.g_69_1179

seq1  GAATTCTAGGTGAGTGTTAAGACTTAACAGGTAGAAGTCAGAGCCATTGT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTAGGTGAGTGTTAAGACTTAACAGGTAGAAGTCAGAGCCATTGT  50

seq1  TTGCAGGGAAAGTGGCAGATGGTGTGTTGGTAGAACTTCTGGTGGTGGGA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGCAGGGAAAGTGGCAGATGGTGTGTTGGTAGAACTTCTGGTGGTGGGA  100

seq1  AATAGGTCAGCCTAGACAGAGACCTATGGATGGATATGGATGGAAATCCC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATAGGTCAGCCTAGACAGAGACCTATGGATGGATATGGATGGAAATCCC  150

seq1  AAGCACAGGCATGGCCAGTCATACAGGGCTCTGCAGCTAATACATTAGGA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGCACAGGCATGGCCAGTCATACAGGGCTCTGCAGCTAATACATTAGGA  200

seq1  TGTGGGGTGGGGGTGGCACATCTCAAACTGAAAAAGTGCCTGGGAGCCGG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGGGGTGGGGGTGGCACATCTCAAACTGAAAAAGTGCCTGGGAGCCGG  250

seq1  GAATGAATGTGATTGCCATCATGACTTTCATAGTGAGGGGAGCTCCTGAC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATGAATGTGATTGCCATCATGACTTTCATAGTGAGGGGAGCTCCTGAC  300

seq1  CTGTCCTAGGCTCTCTGCCAGGTTCTCCAATTCCTACCATACCCAGAGCA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGTCCTAGGCTCTCTGCCAGGTTCTCCAATTCCTACCATACCCAGAGCA  350

seq1  GACACGAGTGCTGGAGATGCAGGCTCAGTGTACAACCTGCCTTTCTACTC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACACGAGTGCTGGAGATGCAGGCTCAGTGTACAACCTGCCTTTCTACTC  400

seq1  TTCTCTCTTCTGTCAACCTAACAGCAGAAATGGCCTGTTTTGAGCGGCAA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTCTCTTCTGTCAACCTAACAGCAGAAATGGCCTGTTTTGAGCGGCAA  450

seq1  CCTTCACAGAATTTTAGCCCTTTAAACCTGGAAGAAACCGCAGTAGGCTT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTTCACAGAATTTTAGCCCTTTAAACCTGGAAGAAACCGCAGTAGGCTT  500

seq1  TTAGCCTCTGATTCCAACTTAAGGTATTGTTGTCTTTAGTCTCACATGCT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAGCCTCTGATTCCAACTTAAGGTATTGTTGTCTTTAGTCTCACATGCT  550

seq1  GCAGAAGCTGGAGGAGAGCCTTAGAGACTTAGGCTGCGGGAACCTCAAGG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAGAAGCTGGAGGAGAGCCTTAGAGACTTAGGCTGCGGGAACCTCAAGG  600

seq1  GAGCTAGCTCCGAGTGCATCCATTTCCCTCCCCTACTGTACAGACAAAGG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGCTAGCTCCGAGTGCATCCATTTCCCTCCCCTACTGTACAGACAAAGG  650

seq1  AACCATACCCAGCACAGGGGTCGTCCAAGGAGAGAGGGTAGTAATACCCA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACCATACCCAGCACAGGGGTCGTCCAAGGAGAGAGGGTAGTAATACCCA  700

seq1  AACTGGAATCAG-TTTGCAAGCCAAAGGCTGTTTTGTACCGACACCAGAG  749
      |||||||||||| |||||||||||||||||||||||||||||||||||||
seq2  AACTGGAATCAGTTTTGCAAGCCAAAGGCTGTTTTGTACCGACACCAGAG  750

seq1  CTTCAAGCCACCTTAAAAACACACACGCAGAGAAAAACAAACAGTCTCAC  799
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTCAAGCCACCTTAAAAACACACACGCAGAGAAAAACAAACAGTCTCAC  800

seq1  CTAGTGAATCCATTGGATTTGCATACTTCTCTTGGGGTTCAGCAAATGCC  849
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAGTGAATCCATTGGATTTGCATACTTCTCTTGGGGTTCAGCAAATGCC  850

seq1  CACATGCTCGGCTCTGGTTTTAAGTAGATACTGTAGAGAAATCACATCAG  899
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACATGCTCGGCTCTGGTTTTAAGTAGATACTGTAGAGAAATCACATCAG  900

seq1  GTGCTCTCTTTCTCCCTCTGCTGGCTCTTGGTGCTGATTTTCTGAAACCG  949
      ||||||||||||| |||||||| |||||||||||||||||||||||||||
seq2  GTGCTCTCTTTCT-CCTCTGCTTGCTCTTGGTGCTGATTTTCTGAAACCG  949

seq1  ACACAGACATTTGGGCAAAGAAATGACTTCAAATAAAATGGAGGCATGCA  999
      | || ||||||||||| ||||||||||||||| |  |||||| |||||||
seq2  A-ACCGACATTTGGGC-AAGAAATGACTTCAATT--AATGGA-GCATGCA  994

seq1  TGTGATTGCTTTAGAAATA-CTAGAGGAATCTATA-GCTTTTTC-TTCAA  1046
      ||||||||||||||||| | | ||||||| |  ||  ||||||| |||||
seq2  TGTGATTGCTTTAGAAAAACCAAGAGGAACCATTACTCTTTTTCTTTCAA  1044

seq1  GAAGCAAAAATCAATCCAATGGGGGGGAAACATCTCTCCCTG---TCTCT  1093
      | ||| |||| |||||| ||||||||  ||||| |||| |||   |||||
seq2  G-AGCTAAAAACAATCC-ATGGGGGG--AACAT-TCTCTCTGGTCTCTCT  1089

seq1  CTTGGTTTCTCTTGA-CTACAC  1114
      || |||||||||||| ||||||
seq2  CTAGGTTTCTCTTGACCTACAC  1111