BAC Information

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BAC

Clone NameB6Ng01-079B15
Chromosome6 (Build37)
Map Location 35,516,635 - 35,517,881
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC100039184, Cald1, Agbl3, Tmem140, 3110062M04Rik, 9530020G05Rik, Stra8, 2010107G12Rik, Cnot4, Nup205, 1810058I24Rik, Slc13a4, BC064033, 1700065J11Rik, Mtpn
Downstream geneLOC100039312, LOC100039327, 9330158H04Rik, Chrm2
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-079B15.bB6Ng01-079B15.g
ACCDH894609DH894610
length1,232394
definitionDH894609|Mus musculus domesticus DNA, BAC clone: B6Ng01-079B15, 5' end.DH894610|Mus musculus domesticus DNA, BAC clone: B6Ng01-079B15, 3' end.
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
gaattcagtgggcgatgccaagagaaaccacgtgtaacatttggaggatg
ggtgacaagttgagaacttgaattgttaacgacccatctagagcctcaga
tgataaaactggaagcagtgagaaatgatctctctataggccccatagga
gacatttataatgattagaacattccatggaaggagcaggcaccttgcag
ggtaaagggtagctctctctgctgctgcttggatgatgttccttcaaagg
tactactgcagtggctttcactttgggcagaagtttggatggtgacttct
gaagattcaatttaaattccaagatgctttagttttcatatctttaagaa
ctgagcctgagaaaatatctgtgtactcactgtgtgtgatgtggacaaac
tgtagattcttcctggactccaagcatctagtctgtaaaatgagctcttg
agtgctagatctataatacatacacaccccttacatttgaatggtaccta
ctctgaaggatgaaagagaaagactggaacttttatcaccattgttgacc
tctcgattctatccagaagataatattttagtagcttattaaacagtacc
aatcttctcgctaactttttaaagtttatgaaagtagataatctacattg
taagatggatccaatttgtaagtcacagggtgtcaattttcctttggaag
aaaaaaataatacaacctgaaaatttcaatttttctggaaattctcattg
taccatgacttcactagatggtatttgtagtcgctgcagcttacacactg
tttgaacttcacacatctcttagaattgtagaccctagttgtagaatccc
aaattgtcagctcaggaatcttcaacctctagatcagcttcttttcagaa
tccaatattggctagctctcagagaagcactgaaggagctgaaacatttt
cacttctagtttcatgaatcacacattcctcggagcacagagcacagggc
caaatgtaatgcggactagaagctatttccaaagtatttactttcccagc
aatccaaatcaccctcttcccaaatggatgtactcgtatccaagctttta
ctttgaaaacaatgaattaatttttgggtgtagtgcaactctgaatacta
aggacttcattttcatgaggacaaggccttgattgtatctccggaacata
agagttagcagttagctgaacagctatatttt

ttagtttagttctataccccattttttgattgggttgtttggtttggttc
tttttttgtgattaacctcttgagttctttatatagtttggatattaacc
ctctatcagatttggggttagtgaaaaaaattttccccatctataggttg
ctgatttgtcttattgactatgtcctttgccttacagaagctttcctgtt
tcatgaggttccatttatcaattcctgatcttagagcatgagacattgga
gttctgtttaggaaatttccccctgtaccaatgagaactcaaaagatcaa
caagctaaagttcccaagtgaggatgcctcagtcccacctggaagagaga
agaaagcaatcacaagtgtggaggggggggctgggagggaaagt
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr6_35516635_35517881
seq2: B6Ng01-079B15.b_49_1280

seq1  GAATTCAGTGGGCGATGCCAAGAGAAACCACGTGTAACATTTGGAGGATG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCAGTGGGCGATGCCAAGAGAAACCACGTGTAACATTTGGAGGATG  50

seq1  GGTGACAAGTTGAGAACTTGAATTGTTAACGACCCATCTAGAGCCTCAGA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTGACAAGTTGAGAACTTGAATTGTTAACGACCCATCTAGAGCCTCAGA  100

seq1  TGATAAAACTGGAAGCAGTGAGAAATGATCTCTCTATAGGCCCCATAGGA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGATAAAACTGGAAGCAGTGAGAAATGATCTCTCTATAGGCCCCATAGGA  150

seq1  GACATTTATAATGATTAGAACATTCCATGGAAGGAGCAGGCACCTTGCAG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACATTTATAATGATTAGAACATTCCATGGAAGGAGCAGGCACCTTGCAG  200

seq1  GGTAAAGGGTAGCTCTCTCTGCTGCTGCTTGGATGATGTTCCTTCAAAGG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTAAAGGGTAGCTCTCTCTGCTGCTGCTTGGATGATGTTCCTTCAAAGG  250

seq1  TACTACTGCAGTGGCTTTCACTTTGGGCAGAAGTTTGGATGGTGACTTCT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACTACTGCAGTGGCTTTCACTTTGGGCAGAAGTTTGGATGGTGACTTCT  300

seq1  GAAGATTCAATTTAAATTCCAAGATGCTTTAGTTTTCATATCTTTAAGAA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAGATTCAATTTAAATTCCAAGATGCTTTAGTTTTCATATCTTTAAGAA  350

seq1  CTGAGCCTGAGAAAATATCTGTGTACTCACTGTGTGTGATGTGGACAAAC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGAGCCTGAGAAAATATCTGTGTACTCACTGTGTGTGATGTGGACAAAC  400

seq1  TGTAGATTCTTCCTGGACTCCAAGCATCTAGTCTGTAAAATGAGCTCTTG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTAGATTCTTCCTGGACTCCAAGCATCTAGTCTGTAAAATGAGCTCTTG  450

seq1  AGTGCTAGATCTATAATACATACACACCCCTTACATTTGAATGGTACCTA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTGCTAGATCTATAATACATACACACCCCTTACATTTGAATGGTACCTA  500

seq1  CTCTGAAGGATGAAAGAGAAAGACTGGAACTTTTATCACCATTGTTGACC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTGAAGGATGAAAGAGAAAGACTGGAACTTTTATCACCATTGTTGACC  550

seq1  TCTCGATTCTATCCAGAAGATAATATTTTAGTAGCTTATTAAACAGTACC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTCGATTCTATCCAGAAGATAATATTTTAGTAGCTTATTAAACAGTACC  600

seq1  AATCTTCTCGCTAACTTTTTAAAGTTTATGAAAGTAGATAATCTACATTG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATCTTCTCGCTAACTTTTTAAAGTTTATGAAAGTAGATAATCTACATTG  650

seq1  TAAGATGGATCCAATTTGTAAGTCACAGGGTGTCAATTTTCCTTTGGAAG  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAGATGGATCCAATTTGTAAGTCACAGGGTGTCAATTTTCCTTTGGAAG  700

seq1  AAAAAAATAATACAACCTGAAAATTTCAATTTTTCTGGAAATTCTCATTG  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAAAATAATACAACCTGAAAATTTCAATTTTTCTGGAAATTCTCATTG  750

seq1  TACCATGACTTCACTAGATGGTATTTGTAGTCGCTGCAGCTTACACACTG  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACCATGACTTCACTAGATGGTATTTGTAGTCGCTGCAGCTTACACACTG  800

seq1  TTTGAACTTCACACATCTCTTAGAATTGTAGACCCTAGTTGTAGAATCCC  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGAACTTCACACATCTCTTAGAATTGTAGACCCTAGTTGTAGAATCCC  850

seq1  AAAATTGTCAGCTCAGGAATCTTCAACCTCTAGATCAGCTTCTTTTCAGA  900
       |||||||||||||||||||||||||||||||||||||||||||||||||
seq2  -AAATTGTCAGCTCAGGAATCTTCAACCTCTAGATCAGCTTCTTTTCAGA  899

seq1  ATCCAATATTGGCTAGCTCTCAGGAGAAGGCACTGAAGGAGCTGAAACAT  950
      |||||||||||||||||||||| ||||| |||||||||||||||||||||
seq2  ATCCAATATTGGCTAGCTCTCA-GAGAA-GCACTGAAGGAGCTGAAACAT  947

seq1  TTTCACTTCTAGTTTCATGAATCAACACATTCCTCGGAGCACAGAGCACA  1000
      ||||||||||||||||||||||| ||||||||||||||||||||||||||
seq2  TTTCACTTCTAGTTTCATGAATC-ACACATTCCTCGGAGCACAGAGCACA  996

seq1  GGGCCAAATGTAATGCGGACTAGAAGCTATTTCCAAAGTATTTACTTTCC  1050
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGCCAAATGTAATGCGGACTAGAAGCTATTTCCAAAGTATTTACTTTCC  1046

seq1  CAGCAATCCAAATCACCCTCTCCCCAAATGGATGTACTCGTAATCACAGC  1100
      ||||||||||||||||||||| ||||||||||||||||||| |||  |||
seq2  CAGCAATCCAAATCACCCTCTTCCCAAATGGATGTACTCGT-ATCCAAGC  1095

seq1  TTTTACTTTGAAAACAATG-ATTA--TTTGTGGTGTAGGTAGCCAAAACT  1147
      ||||||||||||||||||| ||||  |||  |||||||   ||   ||||
seq2  TTTTACTTTGAAAACAATGAATTAATTTTTGGGTGTAG--TGC---AACT  1140

seq1  CTGATATCATAAGAAC-TCATTTCCATGAGGACAAAGGCCTTTGTATTGT  1196
      |||| ||  |||| || |||||| ||||||||| ||||||||   |||||
seq2  CTGA-ATACTAAGGACTTCATTTTCATGAGGAC-AAGGCCTT--GATTGT  1186

seq1  ATCTCCAGAACATAAAAGAGTTTAGCAGTTAGCTGAACTCAGTAATATTT  1246
      |||||| |||||||| ||   ||||||||||||||||  |||  ||||||
seq2  ATCTCCGGAACATAAGAG---TTAGCAGTTAGCTGAA--CAGCTATATTT  1231

seq1  T  1247
      |
seq2  T  1232


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