BAC Information

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BAC

Clone NameB6Ng01-079D14
Chromosome6 (Build37)
Map Location 54,517,395 - 54,674,626
singlet/doubletdoublet
Overlap geneFkbp14, Plekha8, LOC100041292, 2410066E13Rik
Upstream geneCreb5, LOC384386, 1200009O22Rik, Cpvl, LOC666305, Chn2, LOC100042056, Prr15, EG640926, Wipf3, Scrn1
Downstream geneZnrf2, Nod1, A030007L17Rik, Gars, Crhr2, Inmt, C330043M08Rik, Aqp1, Ghrhr, Adcyap1r1, LOC100042219, Neurod6, LOC100041339
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-079D14.bB6Ng01-079D14.g
ACCDH894695DH894696
length671489
definitionDH894695|Mus musculus domesticus DNA, BAC clone: B6Ng01-079D14, 5' end.DH894696|Mus musculus domesticus DNA, BAC clone: B6Ng01-079D14, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(54,673,960 - 54,674,626)(54,517,395 - 54,517,889)
sequence
gaattcaagatgtgtaccaccactacctggcttactattttatttattat
tactctgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgt
gtgtgcaaatgccatgggatagatgcagaaatcaaggaacaacttttcgg
agttgcttctctccttctacctttacaaggattcctgggattgaagttag
gtcatccggcttgcacaacaagcacctttgttctctgagccaccttgccc
agacccatcccccgagctgccaagtgcatttttgggcggccattgtatag
ttgaataaacccataaaggggttttgaagtctttggaaccaaataaatca
tcaatgtgaatgttatccctctgagggggaaggcttcccctgtggaaatg
tcacccctcggagggggaaggcttcccctgtggaagaggcaccgctttga
gggggaaggcttcccctgtggaagtgtcacccctttgagggggaaggctt
cccctgtggaagtggcacagctctgagggggaaggcttcccctgtggaag
tgtcacctctctggaggtgtggggagcttccccaatggaagtgtcacggc
tcttaggggaactgcttcccctgtacaagtgttatactttttgagggaaa
gatttcccttatgaagagtta
catccagcatattttaaagatttaaagatgagatcattgtctgtgtacta
attcaagacttccaacttataccaagtaaaaggctaaagtggggataggt
taggtgcagaacagtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtg
cgcgtgtgtgtgtgtgaaaatatatacacttccttttgcaaatgcttaga
ctacttttggaaagatccataagaaactgtaacaggagattccaaaggga
agagagctgatgactggccaccaggtaaggagactttcccatgtcctctt
aaatcagtgtgtgcttgtagcttgtcaggtgaggaagcagacagtgggag
aaggatgagggaatgtggcaggaaccatctatagattctacagaaaagac
cattggttcacagacttagaacacaaaggtgctttgtttatttactgcaa
acaataaactgtgtagcctaatgcatgtggctaataact
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr6_54673960_54674626
seq2: B6Ng01-079D14.b_42_713 (reverse)

seq1  TAACACTTCATAAGGGAAATCTTTCCCTC-AAAGCTATAACACTTGTACA  49
      |||| |||||||||||||||||||||||| |||  |||||||||||||||
seq2  TAACTCTTCATAAGGGAAATCTTTCCCTCAAAAAGTATAACACTTGTACA  50

seq1  GGGGAAGCCGTTCCCCTCAGAGCCGTGACACCTCCACTGGGGAAGCTCCC  99
      |||||||| |||||||| ||||||||||||| |||| |||||||||||||
seq2  GGGGAAGCAGTTCCCCTAAGAGCCGTGACACTTCCATTGGGGAAGCTCCC  100

seq1  CACACCTCCAGAGCTGTGACACTTCCACAGGGGAAGCCTTCCCCCTCAGA  149
      |||||||||||||  |||||||||||||||||||||||||||||||||||
seq2  CACACCTCCAGAGAGGTGACACTTCCACAGGGGAAGCCTTCCCCCTCAGA  150

seq1  GCTGTGACACTTCCACAGGGGAAGCCTTCCCCCTCAGAGCTGTGACACTT  199
      |||||| ||||||||||||||||||||||||||||| ||  |||||||||
seq2  GCTGTGCCACTTCCACAGGGGAAGCCTTCCCCCTCAAAGGGGTGACACTT  200

seq1  CCACAGGGGAAGCCTTCCCCCTCAGAGCTGTGACACTTCCACAGGGGAAG  249
      |||||||||||||||||||||||| ||| ||| | |||||||||||||||
seq2  CCACAGGGGAAGCCTTCCCCCTCAAAGCGGTGCCTCTTCCACAGGGGAAG  250

seq1  CCTTCCCCCTCAGAGCTGTGACACTTCCACAGGGGAAGCCTTCCCCCTCA  299
      ||||||||||| |||  |||||| ||||||||||||||||||||||||||
seq2  CCTTCCCCCTCCGAGGGGTGACATTTCCACAGGGGAAGCCTTCCCCCTCA  300

seq1  GAGCTATAACACTCACACTGATGATTTCTTTGGTTCCAAAGACTTCAAAA  349
      |||  |||||| ||||| ||||||||| ||||||||||||||||||||||
seq2  GAGGGATAACATTCACATTGATGATTTATTTGGTTCCAAAGACTTCAAAA  350

seq1  CCCCTTTCTGGGTTTATTCAACTATACAATGGCCGCCCAAAAATGCACTT  399
      ||||||| ||||||||||||||||||||||||||||||||||||||||||
seq2  CCCCTTTATGGGTTTATTCAACTATACAATGGCCGCCCAAAAATGCACTT  400

seq1  GGCAGCTCGGGGGATGGGTCTGGGCAAGGTGGCTCAGAGAACAAAGGTGC  449
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCAGCTCGGGGGATGGGTCTGGGCAAGGTGGCTCAGAGAACAAAGGTGC  450

seq1  TTGCTGTGCAAGCCGGATGACCTAACTTCAATCCCAGGAATCCTTGTAAA  499
      ||| ||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGTTGTGCAAGCCGGATGACCTAACTTCAATCCCAGGAATCCTTGTAAA  500

seq1  GGTAGAAGGAGAGAAGCAACTCCGAAAAGTTGTTCCTTGACTTCTGCATC  549
      |||||||||||||||||||||||||||||||||||||||| |||||||||
seq2  GGTAGAAGGAGAGAAGCAACTCCGAAAAGTTGTTCCTTGATTTCTGCATC  550

seq1  TATCCCATGGCATTTG----CACACACACACACACACACACACACACACA  595
      ||||||||||||||||    ||||||||||||||||||||||||||||||
seq2  TATCCCATGGCATTTGCACACACACACACACACACACACACACACACACA  600

seq1  CACACACACACACACAGAGTAATAATAAATAAAATAGTAAGCCAGGTAGT  645
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACACACACACACACAGAGTAATAATAAATAAAATAGTAAGCCAGGTAGT  650

seq1  GGTGGTACACATCTTGAATTCC  667
      ||||||||||||||||||||||
seq2  GGTGGTACACATCTTGAATTCC  672

seq1: chr6_54517395_54517889
seq2: B6Ng01-079D14.g_69_563

seq1  GAATTCCATCCAGCATATTTTAAAGATTTAAAGATGAGATCATTGTCTGT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCATCCAGCATATTTTAAAGATTTAAAGATGAGATCATTGTCTGT  50

seq1  GTACTAATTCAAGACTTCCAACTTATACCAAGTAAAAGGCTAAAGTGGGG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTACTAATTCAAGACTTCCAACTTATACCAAGTAAAAGGCTAAAGTGGGG  100

seq1  ATAGGTTAGGTGCAGAACAGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAGGTTAGGTGCAGAACAGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTG  150

seq1  TGTGTGCGCGTGTGTGTGTGTGAAAATATATACACTTCCTTTTGCAAATG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGTGCGCGTGTGTGTGTGTGAAAATATATACACTTCCTTTTGCAAATG  200

seq1  CTTAGACTACTTTTGGAAAGATCCATAAGAAACTGTAACAGGAGATTCCA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTAGACTACTTTTGGAAAGATCCATAAGAAACTGTAACAGGAGATTCCA  250

seq1  AAGGGAAGAGAGCTGATGACTGGCCACCAGGTAAGGAGACTTTCCCATGT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGGGAAGAGAGCTGATGACTGGCCACCAGGTAAGGAGACTTTCCCATGT  300

seq1  CCTCTTAAATCAGTGTGTGCTTGTAGCTTGTCAGGTGAGGAAGCAGACAG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTCTTAAATCAGTGTGTGCTTGTAGCTTGTCAGGTGAGGAAGCAGACAG  350

seq1  TGGGAGAAGGATGAGGGAATGTGGCAGGAACCATCAATAGATTCTACAGA  400
      ||||||||||||||||||||||||||||||||||| ||||||||||||||
seq2  TGGGAGAAGGATGAGGGAATGTGGCAGGAACCATCTATAGATTCTACAGA  400

seq1  AAAGACCATTGGTTCACAGACTTAGAACACAAAGGTGCTTTGTTTATTTA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGACCATTGGTTCACAGACTTAGAACACAAAGGTGCTTTGTTTATTTA  450

seq1  CTGCAAACAATAAACTGTGTAGCCTAATGCATGTGGCTAATAACT  495
      |||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGCAAACAATAAACTGTGTAGCCTAATGCATGTGGCTAATAACT  495