BAC Information

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BAC

Clone NameB6Ng01-079F09
Chromosome6 (Build37)
Map Location 24,631,668 - 24,787,088
singlet/doubletdoublet
Overlap gene4932701A20Rik, Hyal4, Spam1
Upstream geneCadps2, Tas2r118, LOC100041082, Slc13a1, LOC100041094, Iqub, Ndufa5, Asb15, EG626715, Lmod2, Wasl
Downstream geneHyal5, 6332401O19Rik, LOC384358, Gpr37, Pot1a
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-079F09.bB6Ng01-079F09.g
ACCDH894774DH894775
length1,1581,106
definitionDH894774|Mus musculus domesticus DNA, BAC clone: B6Ng01-079F09, 5' end.DH894775|Mus musculus domesticus DNA, BAC clone: B6Ng01-079F09, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(24,785,915 - 24,787,088)(24,631,668 - 24,632,801)
sequence
gaattcactgtagccataatgagaactttatcaagtcctcaattaaacag
ggagtttaactcaattttgatggatagaaggtctgctattgtgtttaaag
cagtaatatttcttctcttttgtatgcatcaaacctataacaataaacat
tagtcttccaaaatcatccctgaccccacaaagaactgaatgtaataatt
cccttttattaggtctataaaatattatttctagcaacacttaggaaaag
ccagttgaataaaaaaattcttatttattgatcttaaaaaactactgtgt
gatgatttaataaatttggaaaacaacctttcacagaactataaaaatta
taaaaggaattatgtttacctttggaaatcataaaatgcactgcacttag
attgaggacatttcttgaggtcagctctgaaattatttacatacaaacaa
cataaaggggccaggaaattgtatttatgtgactaacataataaccaaag
gatcatagtttacccatttaagactgagaggatacagggagtggggagag
catttgggagagactggaaggagaaaattgaagtgggcaagtgatgtact
tattttaattaaaatccataaaaattgtagatcacgcattactagcccaa
taacaacaaaaaagtccttatgaagcatcttgatttacataatgcagaga
tgtttgggcataataccagtaaacaaagtgtacagttgccccccccacac
acacacacacacacttatcactggtttaggtttccatactttcagtgcaa
taacctagaaatattagttggaagtgtattttttaaaaatcagtttggtg
agttatacctcaataatagaggtctttgccttgtaacgcacagagctttg
agactggtcactagtgtgagagcaatcagaagcaaagtttgaaaaacaaa
gatactgctgtattcacaataattacccatacttttcacagcatctatac
agcatcttattacactaccctatgactagcattggcactaacccttaatt
gttctgacttatattaaactttgcataggcgtgtgtatatgagatacaga
tatttttgaatcagtcctctctggcaatcgaaaatttatgaagactcacc
ataaaata
gaattccttagctgctgactgccaggatacctttcccctcagacctgtaa
cacttgtaattacaaattttttttgacagtataaacttaatatataaatt
gtactttaagcctgactctactgttgcaaggggtagtaaaaatgacagtt
tattaaatttaaatgccctccatttaattacttcagagcaggactgaatg
ggcattcagccactaagatttcctgaaactcttggtcaagtgtgtcaagt
ataagcagtgttgggtttcgtgcaggcctgtgccctagctgcaagagatc
ctgagatttaaatctcaacgttggggatctgcagttttctaagtcagaag
ttcccaagggaaaggaaggatattcaaaagggactcaacagctagttaat
ttaattacaaacagatggagcttcagatgctgactgcgttaggaagaggt
ctcttttgcagagaaagcagtaagaatagaaaagcaaacacaaataataa
ctggatttccagttgtgtggcaactccatgatgccatcttgcatttctcc
ttacatgttactactagtgactatgagctaattgcctgtggctagaattt
aacattattcatttttttgtggttgttttaatatataaatgtaggggcct
ggtctgaggctgaggtcctgttccccaattggttcttgatctgtcagtaa
caaagccatgggccaatactgggtagaaggaataggcaggacttctgggt
tcctgcaggaaaagcagacagatgcaggggaggagaggagagttccccat
catggtttggagagagaaccaagcagccatgtgaggtcttgggaggaatg
tcaacacaggccctcctacaggcaggtagtcaaagcctctaaagtgtagg
gcaagaggatcagagatagaacattgttaaggcacacttttccaggcaga
gatagtagtgccagcgttgtgtccaaagcagttgaaaaggacactgtgtg
ttgtgtgtgcacatgcgtgtcttattgtgatcaaaggaaactgggtggga
ctgtactcactgtcccagaactaagtggggtggcgaagctacattagcaa
taaaaa
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr6_24785915_24787088
seq2: B6Ng01-079F09.b_44_1201 (reverse)

seq1  TATTTTATGGTGATGTCTTTCATAAATATCTGATATGCCAGAGAGGACTG  50
      ||||||||||||| ||| ||||||||| |  ||| |||||||||||||||
seq2  TATTTTATGGTGA-GTC-TTCATAAATTTTCGAT-TGCCAGAGAGGACTG  47

seq1  ATTCCAAAATATACTGTTATCCTCTATATACACACGCCTATGGCAAAGTT  100
      |||| ||||||| ||| ||| ||| |||||||||||||||| ||||||||
seq2  ATTCAAAAATAT-CTG-TAT-CTC-ATATACACACGCCTAT-GCAAAGTT  92

seq1  TAATTATAAGTCAGGAACATTAAGGGGTTAGTGCCAATGGCTAGTCATAG  150
      ||| ||||||||| ||||| | | |||||||||||||| |||||||||||
seq2  TAA-TATAAGTCA-GAACAATTAAGGGTTAGTGCCAAT-GCTAGTCATAG  139

seq1  GGTAGTTGTAATAAGATGCTGTAATAGATGCTGTTGAAAAGTTATGGGTT  200
      ||||| |||||||||||||||| |||||||||| ||||||| |||||| |
seq2  GGTAG-TGTAATAAGATGCTGT-ATAGATGCTG-TGAAAAG-TATGGG-T  184

seq1  ATTTATTGTGAATACAGCAGTATCTTTGTTTTTCAAACTTTGCTTCTGAT  250
      | ||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTATTGTGAATACAGCAGTATCTTTGTTTTTCAAACTTTGCTTCTGAT  234

seq1  TGCTCTCACACTAGTGACCAGTCTCAAAGCTCTGTGCGTTAC-AGGCAAA  299
      |||||||||||||||||||||||||||||||||||||||||| |||||||
seq2  TGCTCTCACACTAGTGACCAGTCTCAAAGCTCTGTGCGTTACAAGGCAAA  284

seq1  GACCTCTATTATTGAGGTATAACTCACCAAACTGATTTTTAAAAAATACA  349
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACCTCTATTATTGAGGTATAACTCACCAAACTGATTTTTAAAAAATACA  334

seq1  CTTCCAACTAATATTTCTAGGTTATTGCACCTGAAAGTATGGAAACCTAA  399
      ||||||||||||||||||||||||||||| ||||||||||||||||||||
seq2  CTTCCAACTAATATTTCTAGGTTATTGCA-CTGAAAGTATGGAAACCTAA  383

seq1  ACCAGTGATAAGTGTGTGTGTGTGTGTGTGGGGGGGGCAACTGTACACTT  449
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCAGTGATAAGTGTGTGTGTGTGTGTGTGGGGGGGGCAACTGTACACTT  433

seq1  TGTTTACTGGTATTATGCCCAAACATCTCTGCATTATGTAAATCAAGATG  499
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTTTACTGGTATTATGCCCAAACATCTCTGCATTATGTAAATCAAGATG  483

seq1  CTTCATAAGGACTTTTTTGTTGTTATTGGGCTAGTAATGCGTGATCTACA  549
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTCATAAGGACTTTTTTGTTGTTATTGGGCTAGTAATGCGTGATCTACA  533

seq1  ATTTTTATGGATTTTAATTAAAATAAGTACATCACTTGCCCACTTCAATT  599
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTTTATGGATTTTAATTAAAATAAGTACATCACTTGCCCACTTCAATT  583

seq1  TTCTCCTTCCAGTCTCTCCCAAATGCTCTCCCCACTCCCTGTATCCTCTC  649
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTCCTTCCAGTCTCTCCCAAATGCTCTCCCCACTCCCTGTATCCTCTC  633

seq1  AGTCTTAAATGGGTAAACTATGATCCTTTGGTTATTATGTTAGTCACATA  699
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTCTTAAATGGGTAAACTATGATCCTTTGGTTATTATGTTAGTCACATA  683

seq1  AATACAATTTCCTGGCCCCTTTATGTTGTTTGTATGTAAATAATTTCAGA  749
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATACAATTTCCTGGCCCCTTTATGTTGTTTGTATGTAAATAATTTCAGA  733

seq1  GCTGACCTCAAGAAATGTCCTCAATCTAAGTGCAGTGCATTTTATGATTT  799
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTGACCTCAAGAAATGTCCTCAATCTAAGTGCAGTGCATTTTATGATTT  783

seq1  CCAAAGGTAAACATAATTCCTTTTATAATTTTTATAGTTCTGTGAAAGGT  849
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAAAGGTAAACATAATTCCTTTTATAATTTTTATAGTTCTGTGAAAGGT  833

seq1  TGTTTTCCAAATTTATTAAATCATCACACAGTAGTTTTTTAAGATCAATA  899
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTTTTCCAAATTTATTAAATCATCACACAGTAGTTTTTTAAGATCAATA  883

seq1  AATAAGAATTTTTTTATTCAACTGGCTTTTCCTAAGTGTTGCTAGAAATA  949
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATAAGAATTTTTTTATTCAACTGGCTTTTCCTAAGTGTTGCTAGAAATA  933

seq1  ATATTTTATAGACCTAATAAAAGGGAATTATTACATTCAGTTCTTTGTGG  999
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATTTTATAGACCTAATAAAAGGGAATTATTACATTCAGTTCTTTGTGG  983

seq1  GGTCAGGGATGATTTTGGAAGACTAATGTTTATTGTTATAGGTTTGATGC  1049
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTCAGGGATGATTTTGGAAGACTAATGTTTATTGTTATAGGTTTGATGC  1033

seq1  ATACAAAAGAGAAGAAATATTACTGCTTTAAACACAATAGCAGACCTTCT  1099
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATACAAAAGAGAAGAAATATTACTGCTTTAAACACAATAGCAGACCTTCT  1083

seq1  ATCCATCAAAATTGAGTTAAACTCCCTGTTTAATTGAGGACTTGATAAAG  1149
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCCATCAAAATTGAGTTAAACTCCCTGTTTAATTGAGGACTTGATAAAG  1133

seq1  TTCTCATTATGGCTACAGTGAATTC  1174
      |||||||||||||||||||||||||
seq2  TTCTCATTATGGCTACAGTGAATTC  1158

seq1: chr6_24631668_24632801
seq2: B6Ng01-079F09.g_70_1175

seq1  GAATTCCTTAGCTGCTGACTGCCAGGATACCTTTCCCCTCAGACCTGTAA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCTTAGCTGCTGACTGCCAGGATACCTTTCCCCTCAGACCTGTAA  50

seq1  CACTTGTAATTACAAATTTTTTTTGACAGTATAAACTTAATATATAAATT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACTTGTAATTACAAATTTTTTTTGACAGTATAAACTTAATATATAAATT  100

seq1  GTACTTTAAGCCTGACTCTACTGTTGCAAGGGGTAGTAAAAATGACAGTT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTACTTTAAGCCTGACTCTACTGTTGCAAGGGGTAGTAAAAATGACAGTT  150

seq1  TATTAAATTTAAATGCCCTCCATTTAATTACTTCAGAGCAGGACTGAATG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTAAATTTAAATGCCCTCCATTTAATTACTTCAGAGCAGGACTGAATG  200

seq1  GGCATTCAGCCACTAAGATTTCCTGAAACTCTTGGTCAAGTGTGTCAAGT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCATTCAGCCACTAAGATTTCCTGAAACTCTTGGTCAAGTGTGTCAAGT  250

seq1  ATAAGCAGTGTTGGGTTTCGTGCAGGCCTGTGCCCTAGCTGCAAGAGATC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAAGCAGTGTTGGGTTTCGTGCAGGCCTGTGCCCTAGCTGCAAGAGATC  300

seq1  CTGAGATTTAAATCTCAACGTTGGGGATCTGCAGTTTTCTAAGTCAGAAG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGAGATTTAAATCTCAACGTTGGGGATCTGCAGTTTTCTAAGTCAGAAG  350

seq1  TTCCCAAGGGAAAGGAAGGATATTCAAAAGGGACTCAACAGCTAGTTAAT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCCCAAGGGAAAGGAAGGATATTCAAAAGGGACTCAACAGCTAGTTAAT  400

seq1  TTAATTACAAACAGATGGAGCTTCAGATGCTGACTGCGTTAGGAAGAGGT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAATTACAAACAGATGGAGCTTCAGATGCTGACTGCGTTAGGAAGAGGT  450

seq1  CTCTTTTGCAGAGAAAGCAGTAAGAATAGAAAAGCAAACACAAATAATAA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTTTTGCAGAGAAAGCAGTAAGAATAGAAAAGCAAACACAAATAATAA  500

seq1  CTGGATTTCCAGTTGTGTGGCAACTCCATGATGCCATCTTGCATTTCTCC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGGATTTCCAGTTGTGTGGCAACTCCATGATGCCATCTTGCATTTCTCC  550

seq1  TTACATGTTACTACTAGTGACTATGAGCTAATTGCCTGTGGCTAGAATTT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTACATGTTACTACTAGTGACTATGAGCTAATTGCCTGTGGCTAGAATTT  600

seq1  AACATTATTCATTTTTTTGTGGTTGTTTTAATATATAAATGTAGGGGCCT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACATTATTCATTTTTTTGTGGTTGTTTTAATATATAAATGTAGGGGCCT  650

seq1  GGTCTGAGGCTGAGGTCCTGTTCCCCAATTGGTTCTTGATCTGTCAGTAA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTCTGAGGCTGAGGTCCTGTTCCCCAATTGGTTCTTGATCTGTCAGTAA  700

seq1  CAAAGCCATGGGCCAATACTGGGTAGAAGGAATAGGCAGGACTTCTGGGT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAAGCCATGGGCCAATACTGGGTAGAAGGAATAGGCAGGACTTCTGGGT  750

seq1  TCCTGCAGGAAAAGCAGACAGATGCAGGGGAGGAGAGGAGAGTTCCCCAT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCTGCAGGAAAAGCAGACAGATGCAGGGGAGGAGAGGAGAGTTCCCCAT  800

seq1  CATGGTTTGGAGAGAGAACCAAGCAGCCATGTGAGGTCTTGGGAGGAATG  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATGGTTTGGAGAGAGAACCAAGCAGCCATGTGAGGTCTTGGGAGGAATG  850

seq1  TCAACACAGGCCCTCCTACAGGCAGGTAGTCAAAGCCTCTAAAGTGTAGG  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAACACAGGCCCTCCTACAGGCAGGTAGTCAAAGCCTCTAAAGTGTAGG  900

seq1  GCAAGAGGATCAGAGATAAGAACATTGTTAAGGGCACACTTTTCCAGGCA  950
      ||||||||||||||||| ||||||||||||| ||||||||||||||||||
seq2  GCAAGAGGATCAGAGAT-AGAACATTGTTAA-GGCACACTTTTCCAGGCA  948

seq1  GGAGATAGTAGTGCCCAGCGGTTGTGTCCAAAGGCAAGTTGAAAAGGAAC  1000
       |||||||||||| ||||| |||||||||||||   ||||||||||||  
seq2  -GAGATAGTAGTG-CCAGC-GTTGTGTCCAAAG--CAGTTGAAAAGGA--  991

seq1  AACTGTGTGTTTGTGTGTGCACATGCGTGTCTTTTATCTGTGGATTCAAA  1050
       |||||||| ||||||||||||||||||||||| |   ||||   |||||
seq2  CACTGTGTG-TTGTGTGTGCACATGCGTGTCTTAT---TGTG--ATCAAA  1035

seq1  GGAAACTGGGTTGGGACTGGTACCTCAACCTGTTCCCCCAGAACTAAGGT  1100
      |||||||||| ||||||| ||| ||||  ||||   ||||||||||| ||
seq2  GGAAACTGGG-TGGGACT-GTA-CTCA--CTGT---CCCAGAACTAA-GT  1076

seq1  GGGGTGGCGAAAAGCTACATATAGCATATAAAAA  1134
      |||||||||  ||||||||| ||||| |||||||
seq2  GGGGTGGCG--AAGCTACAT-TAGCA-ATAAAAA  1106