BAC Information

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BAC

Clone NameB6Ng01-079L09
Chromosome6 (Build37)
Map Location 52,303,736 - 52,415,134
singlet/doubletdoublet
Overlap genenone
Upstream geneEG625167, Nfe2l3, Hnrpa2b1, Cbx3, Snx10, LOC100041820, Skap2, LOC666391, Hoxa1, Hoxa2, Hoxa3, Hoxa4, Hoxa5, Hoxa6, Hoxa7, Hoxa9, Hoxa10, Hoxa11, Hoxa13, Evx1, EG666487
Downstream gene1700094M24Rik, EG545841, Hibadh, Tax1bp1, Jazf1, LOC666259, LOC666516, D430007I03
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-079L09.bB6Ng01-079L09.g
ACCDH895041DH895042
length1,0421,141
definitionDH895041|Mus musculus domesticus DNA, BAC clone: B6Ng01-079L09, 5' end.DH895042|Mus musculus domesticus DNA, BAC clone: B6Ng01-079L09, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(52,303,736 - 52,304,781)(52,413,966 - 52,415,134)
sequence
gaattcactatgtagcccaggatagctcaaactcacagagagcctctgtc
tccccagtgctaccttaccaatgtcttagtattttttgaactaattttta
agcattattttattttattgtgtgtgcatgttgtacatgtgtgcaggcat
attaaacctccccacaaggttaaaggcatacgccagcaccatggccagcc
tggggcttatctttcttaaatggcatatctacactgtgaagtgactgtgg
gggccaaggtcatatatatagttcatatggactcatccatgtgcttttca
aagttttccttaaaatagctaattattattgtgattgtgtatagaggagt
ttgaatgccatggtgcttgtgtggcagacagaagacaacattgtagagtc
agttctaatccacctttgcctgggttccagggatcaaacccaggtcatta
ggtttgaatcatccatttctcacctgtgtatcatctcaccagccctatgc
tttacgtttgcttttaataattatttccttttttgtggatgatattttgc
cagatgaatgcctgatgcttacagagaacagaagagggtgtcagatcacc
tgggacaggagttacaggtagttatgagccaccttgagggttctgggaat
tgaaactgggttcttgtggtggtttgtatatgcttgactcagggagtggc
actattagaaagtatggccttgttggattaggtgtggtcttgttggagga
agttggatggccaccagaaacagcagcagcagtggagcggagtcaaagtg
tagaggacagagctggagaagtcacccaagcccttgggaggagtccagaa
gatcatgtgtggatcccagacactggaacgagaagctataaagttgaagt
tgtcttggagaccccagatgttggagatgccagggctgtgggatatctgc
tgaggaaagctgctaactaggaatggaaacagtcctagagaacacagttt
gttgcgctgatgcagatctgtcaacagcagtctacaaggatg
gaattccccacagggaaatcagaacacttctctcaatccactttttgagt
cttaccatccttcaggccccatacattgttcagtgtgtgattattattat
tattattattattattattattattaagaagctaaccattctggacttct
aagatccctaccactatttaaaaaaaaattttttttgaacaaaagaaaaa
aaaaaaacaaaaaccctggatgaagtggcaaccttaaacacatccagcct
ccctcttagaaatgtgggcgtcttaatcagtagttagcattttagcacca
gggtaaatggtccctgtggctttctgctggaacaacgaacatgaagatct
agagaaccggccaagctcttctgtctaattggtaggaaagtggggtttca
gccaggacactgtgtgattgctgggccaaacccagactgggctaaactga
gaatgtgcagagtctcaggacatcagggataagtgggaaaggggggaaaa
aagagagagagattctgggtcctttcaggatacttcagcttttgtttccc
tgagtttgctaaagggtcattgttcagggcagtgtccatctgtcacttaa
tgtcaccttgtacttagaacttagctctgggaccagacctttcttctaag
gacttggtaagctttctttctctgtaaaaagatttcagacttccagcatc
tctagtatgttgagagcataagtttctgtagtcccaaccagcctgtgctt
tgctcagaatatcttattttgattaaggattgggagagggtgagtgtccc
tggaaaggaggcaggagaaagaggacaggaaataaggccggatgactgta
ccaagtcatttggagtcaatttctttctcttggggagaagactaagtcgg
cagagtaaaagttccaggggttgaaagttggtgaacctggctgagtgtag
acacacaaagagatggctgggacacaggatggcctctgtacatcgtggtt
tgaggagatagttgctactagctgtgcttaaatgtagagggcttgggaac
acagagtcattgaatgagctggaatgccactagcattaatttgaagggta
ccatttgctggttggatagcaagtacgttggtatgggaaaa
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr6_52303736_52304781
seq2: B6Ng01-079L09.b_48_1089

seq1  GAATTCACTATGTAGCCCAGGATAGCTCAAACTCACAGAGAGCCTCTGTC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCACTATGTAGCCCAGGATAGCTCAAACTCACAGAGAGCCTCTGTC  50

seq1  TCCCCAGTGCTACCTTACCAATGTCTTAGTATTTTTTGAACTAATTTTTA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCCCAGTGCTACCTTACCAATGTCTTAGTATTTTTTGAACTAATTTTTA  100

seq1  AGCATTATTTTATTTTATTGTGTGTGCATGTTGTACATGTGTGCAGGCAT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCATTATTTTATTTTATTGTGTGTGCATGTTGTACATGTGTGCAGGCAT  150

seq1  ATTAAACCTCCCCACAAGGTTAAAGGCATACGCCAGCACCATGGCCAGCC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTAAACCTCCCCACAAGGTTAAAGGCATACGCCAGCACCATGGCCAGCC  200

seq1  TGGGGCTTATCTTTCTTAAATGGCATATCTACACTGTGAAGTGACTGTGG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGGGCTTATCTTTCTTAAATGGCATATCTACACTGTGAAGTGACTGTGG  250

seq1  GGGCCAAGGTCATATATATAGTTCATATGGACTCATCCATGTGCTTTTCA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGCCAAGGTCATATATATAGTTCATATGGACTCATCCATGTGCTTTTCA  300

seq1  AAGTTTTCCTTAAAATAGCTAATTATTATTGTGATTGTGTATAGAGGAGT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGTTTTCCTTAAAATAGCTAATTATTATTGTGATTGTGTATAGAGGAGT  350

seq1  TTGAATGCCATGGTGCTTGTGTGGCAGACAGAAGACAACATTGTAGAGTC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGAATGCCATGGTGCTTGTGTGGCAGACAGAAGACAACATTGTAGAGTC  400

seq1  AGTTCTAATCCACCTTTGCCTGGGTTCCAGGGATCAAACCCAGGTCATTA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTTCTAATCCACCTTTGCCTGGGTTCCAGGGATCAAACCCAGGTCATTA  450

seq1  GGTTTGAATCATCCATTTCTCACCTGTGTATCATCTCACCAGCCCTATGC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTTTGAATCATCCATTTCTCACCTGTGTATCATCTCACCAGCCCTATGC  500

seq1  TTTACGTTTGCTTTTAATAATTATTTCCTTTTTTGTGGATGATATTTTGC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTACGTTTGCTTTTAATAATTATTTCCTTTTTTGTGGATGATATTTTGC  550

seq1  CAGATGAATGCCTGATGCTTACAGAGAACAGAAGAGGGTGTCAGATCACC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGATGAATGCCTGATGCTTACAGAGAACAGAAGAGGGTGTCAGATCACC  600

seq1  TGGGACAGGAGTTACAGGTAGTTATGAGCCACCTTGAGGGTTCTGGGAAT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGGACAGGAGTTACAGGTAGTTATGAGCCACCTTGAGGGTTCTGGGAAT  650

seq1  TGAAACTGGGTTCTTGTGGTGGTTTGTATATGCTTGACTCAGGGAGTGGC  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAAACTGGGTTCTTGTGGTGGTTTGTATATGCTTGACTCAGGGAGTGGC  700

seq1  ACTATTAGAAAGTATGGCCTTGTTGGATTAGGTGTGGTCTTGTTGGAGGA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTATTAGAAAGTATGGCCTTGTTGGATTAGGTGTGGTCTTGTTGGAGGA  750

seq1  AGTTGGATGGCCACCAGAAACAGCAGCAGCAGTGGAGCGGAGTCAAAGTG  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTTGGATGGCCACCAGAAACAGCAGCAGCAGTGGAGCGGAGTCAAAGTG  800

seq1  TAGAGGACAGAGCTGGAGAAGTCACCCAAGCCCTTGGGAGGAGTCCAGAA  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGAGGACAGAGCTGGAGAAGTCACCCAAGCCCTTGGGAGGAGTCCAGAA  850

seq1  GATCATGTGTGGATCCCAGACACTGGAACGAGAAGCTATAAAGTTGAAGT  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATCATGTGTGGATCCCAGACACTGGAACGAGAAGCTATAAAGTTGAAGT  900

seq1  TGTCTTGGAGACCCCAAGATGTTGGAGATGCCAGGGCTGTGGGATATCTG  950
      ||||||||||||||| ||||||||||||||||||||||||||||||||||
seq2  TGTCTTGGAGACCCC-AGATGTTGGAGATGCCAGGGCTGTGGGATATCTG  949

seq1  CTGAGGAAAGCTGCTAACTAGGAATGGAAACAGCCCTAGAGAACACAGTT  1000
      ||||||||||||||||||||||||||||||||| ||||||||||||||||
seq2  CTGAGGAAAGCTGCTAACTAGGAATGGAAACAGTCCTAGAGAACACAGTT  999

seq1  TGTTGCCGCTGAATGCCAGATCTGTCAACAGCAGTCTACAAGGATG  1046
      ||||| ||||| ||| ||||||||||||||||||||||||||||||
seq2  TGTTG-CGCTG-ATG-CAGATCTGTCAACAGCAGTCTACAAGGATG  1042

seq1: chr6_52413966_52415134
seq2: B6Ng01-079L09.g_71_1211 (reverse)

seq1  TTTTCCCATTTCCATACGCTTACCCTTGCTATCTCCAACCAGCAAATGGT  50
      |||||||| | ||| |||  ||  |||||||  |||||||||||||||||
seq2  TTTTCCCA-TACCA-ACG--TA--CTTGCTA--TCCAACCAGCAAATGGT  42

seq1  ACCACCTTCCATATAATTGCTTAGTGGCCATATCCAGCTCCATTCCAATG  100
      ||  |||| || || | ||| |||||| ||| ||||||| |||| |||| 
seq2  AC--CCTT-CAAATTAATGC-TAGTGG-CAT-TCCAGCT-CATT-CAAT-  83

seq1  GCCTCCTGGTGTTCACCAGCCCCTTCTACATTTAAGCCACAAGCTACGTA  150
      | |||   |||||| | |||||  |||||||||||| ||| ||||| |||
seq2  GACTC--TGTGTTCCCAAGCCC--TCTACATTTAAG-CAC-AGCTA-GTA  126

seq1  GCAACTATCTCCTCAAAACCACGATGTACAGGAGCCATCCTGTGTTCCCA  200
      |||||||||||||| ||||||||||||||||  ||||||||||| |||||
seq2  GCAACTATCTCCTC-AAACCACGATGTACAGAGGCCATCCTGTG-TCCCA  174

seq1  GCCATCTTCTTTGTGTGTCTACCACTCAGCCAGGTTCACCAACTTTCAAC  250
      |||||| |||||||||||||| ||||||||||||||||||||||||||||
seq2  GCCATC-TCTTTGTGTGTCTA-CACTCAGCCAGGTTCACCAACTTTCAAC  222

seq1  CCCTGGAACTTTTACTCTGGCCGACTTAGTCTTCT-CCCAAGAGAAGGAA  299
      |||||||||||||||||| |||||||||||||||| |||||||||| |||
seq2  CCCTGGAACTTTTACTCT-GCCGACTTAGTCTTCTCCCCAAGAGAAAGAA  271

seq1  TTTGACTCCAAATGACTTGGTACAGTCATCCGGCCTTATTTCCTGTCCTC  349
       |||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTGACTCCAAATGACTTGGTACAGTCATCCGGCCTTATTTCCTGTCCTC  321

seq1  TTTCTCCTGCCTCC-TTCCAGGGACACTCACCCTCTCCCAATTCCTTAAT  398
      |||||||||||||| |||||||||||||||||||||||||| ||||||||
seq2  TTTCTCCTGCCTCCTTTCCAGGGACACTCACCCTCTCCCAA-TCCTTAAT  370

seq1  CAAAATAAGATATTCTGAGCAAAGCACAGGCTGGTTGGGACTACAGAAAC  448
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAAATAAGATATTCTGAGCAAAGCACAGGCTGGTTGGGACTACAGAAAC  420

seq1  TTATGCTCTCAACATACTAGAGATGCTGGAAGTCTGAAATCTTTTTACAG  498
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTATGCTCTCAACATACTAGAGATGCTGGAAGTCTGAAATCTTTTTACAG  470

seq1  AGAAAGAAAGCTTACCAAGTCCTTAGAAGAAAGGTCTGGTCCCAGAGCTA  548
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAAAGAAAGCTTACCAAGTCCTTAGAAGAAAGGTCTGGTCCCAGAGCTA  520

seq1  AGTTCTAAGTACAAGGTGACATTAAGTGACAGATGGACACTGCCCTGAAC  598
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTTCTAAGTACAAGGTGACATTAAGTGACAGATGGACACTGCCCTGAAC  570

seq1  AATGACCCTTTAGCAAACTCAGGGAAACAAAAGCTGAAGTATCCTGAAAG  648
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATGACCCTTTAGCAAACTCAGGGAAACAAAAGCTGAAGTATCCTGAAAG  620

seq1  GACCCAGAATCTCTCTCTCTTTTTTCCCCCCTTTCCCACTTATCCCTGAT  698
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACCCAGAATCTCTCTCTCTTTTTTCCCCCCTTTCCCACTTATCCCTGAT  670

seq1  GTCCTGAGACTCTGCACATTCTCAGTTTAGCCCAGTCTGGGTTTGGCCCA  748
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCCTGAGACTCTGCACATTCTCAGTTTAGCCCAGTCTGGGTTTGGCCCA  720

seq1  GCAATCACACAGTGTCCTGGCTGAAACCCCACTTTCCTACCAATTAGACA  798
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAATCACACAGTGTCCTGGCTGAAACCCCACTTTCCTACCAATTAGACA  770

seq1  GAAGAGCTTGGCCGGTTCTCTAGATCTTCATGTTCGTTGTTCCAGCAGAA  848
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAGAGCTTGGCCGGTTCTCTAGATCTTCATGTTCGTTGTTCCAGCAGAA  820

seq1  AGCCACAGGGACCATTTACCCTGGTGCTAAAATGCTAACTACTGATTAAG  898
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCCACAGGGACCATTTACCCTGGTGCTAAAATGCTAACTACTGATTAAG  870

seq1  ACGCCCACATTTCTAAGAGGGAGGCTGGATGTGTTTAAGGTTGCCACTTC  948
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACGCCCACATTTCTAAGAGGGAGGCTGGATGTGTTTAAGGTTGCCACTTC  920

seq1  ATCCAGGGTTTTTGTTTTTTTTTTTTCTTTTGTTCAAAAAAAATTTTTTT  998
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCCAGGGTTTTTGTTTTTTTTTTTTCTTTTGTTCAAAAAAAATTTTTTT  970

seq1  TTAAATAGTGGTAGGGATCTTAGAAGTCCAGAATGGTTAGCTTCTTAATA  1048
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAAATAGTGGTAGGGATCTTAGAAGTCCAGAATGGTTAGCTTCTTAATA  1020

seq1  ATAATAATAATAATAATAATAATAATAATAATCACACACTGAACAATGTA  1098
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAATAATAATAATAATAATAATAATAATAATCACACACTGAACAATGTA  1070

seq1  TGGGGCCTGAAGGATGGTAAGACTCAAAAAGTGGATTGAGAGAAGTGTTC  1148
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGGGCCTGAAGGATGGTAAGACTCAAAAAGTGGATTGAGAGAAGTGTTC  1120

seq1  TGATTTCCCTGTGGGGAATTC  1169
      |||||||||||||||||||||
seq2  TGATTTCCCTGTGGGGAATTC  1141