BAC Information

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BAC

Clone NameB6Ng01-080A19
Chromosome6 (Build37)5 (Build37)
Map Location 18,835,448 - 18,835,96814,180,096 - 14,180,474
singlet/doubletsingletsinglet
Overlap genenone
Upstream geneSt7, Wnt2, Asz1, LOC386426, LOC636450, LOC100040751, Cftr, Cttnbp2, EG545829, Lsm8, Ankrd7
Downstream geneLOC626180, Eif3s6-ps4
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-080A19.bB6Ng01-080A19.g
ACCDH895293DH895294
length9951,017
definitionDH895293|Mus musculus domesticus DNA, BAC clone: B6Ng01-080A19, 5' end.DH895294|Mus musculus domesticus DNA, BAC clone: B6Ng01-080A19, 3' end.
singlet/doubletsingletsinglet
BLAST hituniqueunique
Map location.(18,835,448 - 18,835,968)(14,180,096 - 14,180,474)
sequence
gaattctttgttcagttctgagccccattttttaagggggttatttgatt
ttctgaggtccaccttcttgagttctttatatatgttggatattagtccc
ctatctgatttaggataggtaaagatcctttcccagtctgttggtggtct
ttttgtcttatagacagtgtcttttgccttgcagaaactttggagtttca
ttaggtcccatttgtcaattctcgatcttacagcacaagccattgctgtt
ctgttcaggaatttttcccctgtgcccatatcttcaaggcttttccccac
tttctcctctataagtttcagtgtctctggttttatgtgaagttccttga
tccacttagatttgaccttagtacaaggagataagtatggatcgattcgc
attcttctacatgataacaaccagttgtgccagcaccaattgttgaaaat
gctgtctttcttccactggatggttttggctcccttgtcgaagatcaagt
gaccataggtgtgtgggttcatttctgggtcttcaattctattccattgg
tccacttgtctgtctctataccagtaccatgcagtttttatcacaattgc
tctgtagtaaagctttaggtcaggcatggtgattccaccagaggttcttt
tatccttgagaagagtttttgctatcctcggttttttgttattccagatg
aatttgcaaattgctccttctaattcgttgaagaattgagttggaatttt
aatggggattgcattgaatctgtagattgcttttggcaagatagccattt
ttacaatgttggtcctgccaatccatgagcatgggagatctttccatctt
ctgagatcttctttaatttctttcttcagggatttgaagtttttatcata
cagatctttcacttccttcgtagagtcacgccgagatattttatattatt
tgtggctattgagaagggtgttgtttccctaatttctttctcagc
gaattcacacacttctcacttcctcgatagaacaagaatatgagattgtt
tctcagttgatctgtctttgtatatcacctgtgttttgtaggaggcactg
gttgctggctagactgcagtcacataccttcacccagggctgtgagtaaa
gtcagctttactggatcagcagagcctagcgtggggaaagcactgtgtct
tcatggggaaacacggtgctctcgtgttttaaaaagcaagggatgagaat
taagaagaaaaataccagcagcaaatgtccattcactttgggcaaattat
ccatttcttgttcctgtttcttcatttttaaagttgggatagaagccaca
gcagcagcggtcgccatcttggtccgggacctgccgaacttaggaaatta
gtctgaacaggtgagagggtgcgccagagaacctgacagcctctggaaca
ggcagaagcacagaggggctgaggcagcaccctgtgtgggccggggacag
ccggccaccttccggaccagaggacaggtgcccgcccggctggggaggcg
gcctaagccacagcagcagcggtcgccatcttggtccgggacccgccgaa
cttaggaaattagtctgaacaggtgagagggtgcgccagagaacctgaca
gcttctggaacaggcggaagcacagaggcgctgaggcagcaccctgcgtg
ggccggggacagccggccaccttccggaccagaggacaggtgcccacccg
gctggggaggcggcctaagccacagcagcagcggtcgccatcttggtccg
gacccgccgaacttaggaaattagtctgaacagggtgagagggtgctcca
gagaacctgacagcttctggaacaggcgggaagcacagaggcactgaggc
agcaccctttgtgggccggggacagccagccaccgtctggaccggaggac
aggtgcccacccggctggggaggcggcctaagccacagcagcagcggtcg
gcatcttggtcgggacc
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr6_18835448_18835968
seq2: B6Ng01-080A19.b_45_566 (reverse)

seq1  ATGAACCCACACACCTATGGTCACTTGATCTTCGACAAGGGAGCTAAAAC  50
      |||||||||||||||||||||||||||||||||||||||||||| |||||
seq2  ATGAACCCACACACCTATGGTCACTTGATCTTCGACAAGGGAGCCAAAAC  50

seq1  CATCCAGTGGAAGAAAGACAGCATTTTCAACAATTGGTGCTGGCACAACT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATCCAGTGGAAGAAAGACAGCATTTTCAACAATTGGTGCTGGCACAACT  100

seq1  GGTTGTTATCTTGTAGAAGAATGTGAATCGATCCATACTTATCTCCATGT  150
      |||||||||| |||||||||||| |||||||||||||||||||||| |||
seq2  GGTTGTTATCATGTAGAAGAATGCGAATCGATCCATACTTATCTCCTTGT  150

seq1  ACTAAGGTCAAATCTAAGTGGATCAAGGAACTTCACATAAAACCAGAGAC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTAAGGTCAAATCTAAGTGGATCAAGGAACTTCACATAAAACCAGAGAC  200

seq1  ACTGAAACTTATAGAGGAGAAAGTGGGGAAAAGCCTTGAAGATATGGGCA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTGAAACTTATAGAGGAGAAAGTGGGGAAAAGCCTTGAAGATATGGGCA  250

seq1  GAGGGGAAAAGTTCCTGAACAGAACAGCAATGGC-TGTGCTGTGAGGTAG  299
       ||||||||| ||||||||||||||||||||||| |||||||| || | |
seq2  CAGGGGAAAAATTCCTGAACAGAACAGCAATGGCTTGTGCTGTAAGATCG  300

seq1  AGAATCGACAAATGGGACCTAATGAAACTCCAAAGTTTCTGCAAGGCAAA  349
      ||||| ||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAATTGACAAATGGGACCTAATGAAACTCCAAAGTTTCTGCAAGGCAAA  350

seq1  AGACACCGTCAATAAGACAAAAAGACCACCAACAGATTGGGAAAGGATCT  399
      |||||| ||| ||||||||||||||||||||||||| |||||||||||||
seq2  AGACACTGTCTATAAGACAAAAAGACCACCAACAGACTGGGAAAGGATCT  400

seq1  TTACCTATCCTAAATCAGATAGGGGACTAATATCCAACATATATAAAGAA  449
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTACCTATCCTAAATCAGATAGGGGACTAATATCCAACATATATAAAGAA  450

seq1  CTCAAGAAGGTGGACTTCAGAAAATCAAATAACCCCATTAATAAATGGGG  499
      ||||||||||||||| |||||||||||||||||||| |||| ||||||||
seq2  CTCAAGAAGGTGGACCTCAGAAAATCAAATAACCCCCTTAAAAAATGGGG  500

seq1  CTCAGAACTGAACAAAGAATTC  521
      ||||||||||||||||||||||
seq2  CTCAGAACTGAACAAAGAATTC  522

seq1: chr5_14180096_14180474
seq2: B6Ng01-080A19.g_487_857 (reverse)

seq1  GATGGCGACCGCTGCTGCTGTGGCTTAGGCCGCCTCCCCAGCCGGGCGGG  50
      |||||||||||||||||||||||||||||||||||||||||||||| |||
seq2  GATGGCGACCGCTGCTGCTGTGGCTTAGGCCGCCTCCCCAGCCGGGTGGG  50

seq1  CACCTGTCCTCCGGTCCGGAAGGTGGCCGGCTGTCCCCGGCCCACGCAGG  100
      ||||||||||| ||||||||||||||||||||||||||||||||||||||
seq2  CACCTGTCCTCTGGTCCGGAAGGTGGCCGGCTGTCCCCGGCCCACGCAGG  100

seq1  GTGCTGCCTCAGCGCCTCTTCGCCTCTGTGCTTCCGCCTGTTCCAGAAGC  150
      ||||||||||||        ||||||||||||||||||||||||||||||
seq2  GTGCTGCCTCAG--------CGCCTCTGTGCTTCCGCCTGTTCCAGAAGC  142

seq1  TGTCAGGTTCTCTGGCGCACCCTCTCACCTGTTCAGACTAATTTCCTAAG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTCAGGTTCTCTGGCGCACCCTCTCACCTGTTCAGACTAATTTCCTAAG  192

seq1  TTCGGCGGGTCCCGGACCAAGATGGCGACCGCTGCTGCTGTGGCTTAGGC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCGGCGGGTCCCGGACCAAGATGGCGACCGCTGCTGCTGTGGCTTAGGC  242

seq1  CGCCTCCCCAGCCGGGCGGGCACCTGTCCTCCGGTCCGGAAGGTGGCCGG  300
      ||||||||||||||||||||||||||||||| ||||||||||||||||||
seq2  CGCCTCCCCAGCCGGGCGGGCACCTGTCCTCTGGTCCGGAAGGTGGCCGG  292

seq1  CTGTCCCCGGCCCACACAGGGTGCTGCCTCAGCCCCTCTGTGCTTCTGCC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGTCCCCGGCCCACACAGGGTGCTGCCTCAGCCCCTCTGTGCTTCTGCC  342

seq1  TGTTCCAGAGGCTGTCAGGTTCTCTGGCG  379
      |||||||||||||||||||||||||||||
seq2  TGTTCCAGAGGCTGTCAGGTTCTCTGGCG  371