BAC Information

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BAC

Clone NameB6Ng01-080F03
Chromosome4 (Build37)6 (Build37)
Map Location 93,720,809 - 93,722,092126,666,542 - 126,666,991
singlet/doubletsingletsinglet
Overlap genenone
Upstream geneLOC620269, LOC384125, Tusc1
Downstream gene5830433M19Rik, Plaa, LOC667250, Lrrc19, Ift74, Tek, 4930579C15Rik, LOC100039252, Mysm1, LOC100039265, LOC665029, Jun
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-080F03.bB6Ng01-080F03.g
ACCDH895492DH895493
length1,274964
definitionDH895492|Mus musculus domesticus DNA, BAC clone: B6Ng01-080F03, 5' end.DH895493|Mus musculus domesticus DNA, BAC clone: B6Ng01-080F03, 3' end.
singlet/doubletsingletsinglet
BLAST hituniqueunique
Map location.(93,720,809 - 93,722,092)(126,666,542 - 126,666,991)
sequence
gaattctatgatccattgatccctgtgattttctgtggttctctcttctt
tggtgagggggtagtattcatacttatctgtgggaataatgacaagattt
agtaggtagtaaggtagtgtgttgataaatcaatgtaggggttttctatg
gtctgagatgtctctggttccaagaagctggctatgtttccagtactagg
acagagagaagaggcataaatgatattatttgataaaccttcaaggaatt
acagtactttgcatttacctaatattatacactatatatatttacacatg
gcatatacatatcttaaaggaagtttagcacttgggctgataatgttccc
cacaagaaccatagacaaacaaaaactcctgtaccagacacaagaaacct
cctttcaaagggtttgttagactagtctaagtgactcccaaaacaatata
gatgactgagatagctcctggttccttatcatggattgaggctgggtccc
tatttctaaagacactacacacttggcacacagtttgagttatatctggc
ctgaaagcttctttcttttccaaagcctaccttccatggttcctgaaaat
attatgtaagattagaagggaaggagtgaataaaacagacctgcccagct
gcagcccttacaaatgacagttgctgccagcatgggaagatatgcataaa
ggtacaagagtggcatcctgtgtcactgccaacaaatgctgtctaactga
acttgagacccacttaatatgagaaaactcaagctagatttatcttgaac
ttcattcatgtgactctccttcccatattacctacctatcaagaagtatc
aatcaccaagaatttcatgttttctaaagatggaaaaaaaccaattcttt
ccatcaagcccctcctttttctaattgtttacaagctcactctgtacaaa
tgctactgatacttatatcagcattttgacgctttaaaaaaattccgaga
tacgtctagaggcatgttttgtgtgggctcgtagcctctaaagtctatag
tcagtttatgccatcatataaaggccagggatgaaacagaaagaaaatca
aggcagaagatgtgttctaaagcaagctgcttctttcatattggccagga
gccaaagatagtggtgtggagggtcaagccttcctttatccattccatgg
cacatttatatattggcacattcataagcctcttccactaaccatgtcct
aaggttcactcatacttcccaatg
gaattcactctgtagaccaggctagcctcgaacttagaaatcagcctgct
tctgcctcccaagtgctgggactaaaggtgtgctccactaccacctgact
tggtttttgtttttttttaaagaagattattttgttttatgggtacatga
tttttgcctacctgcaagtgtgtatttcacaagcacacctagtacctgca
gagccagaagagagtacggaatatcctggaattggaattaaagacacttg
tgggtcgccatcttggtccaggacccgccgaacttaggaaattagtctga
acaggtgagagggtgcgccagagagcctgacagcttctggaacaggcgga
agcacagaggcgctgaggcagcaccctgtgtgggccggggacagccggcc
accttccggaccagaggacaggtgcccgcccggctggggaggcgacctaa
gccacagcagcagcggtcgccatcttggtccgggacccgccgaacttagg
aaattagtctgaacaggtgagagggtgcgccagagaacctgacagcttct
ggaacaggcggaagcacagaggcgctgaggcagcaccctttgtgggccgg
ggacagccagccaccttccggaccggaggacaggtgcccgcccggctggg
gaggcggcctaagccacagcagcagcggtcgccatcttggtccgagaccc
gccgaacttaggaaattagtctgaacaggtgagagggtgcgccagagaac
ctgacagcttctggaacaggcagaagcacagaggcgctgaggcagcaccc
tgtgtgggccggggacagccagccaccgtcccggaccggaggacaggtgc
ccacccagctggggaggcggcctaagccacagcagcagcggtcgccatct
tggtcccgggactcaaggaacttaggaatttagtctgcttagtgagagtc
tgtacactgggaac
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr4_93720809_93722092
seq2: B6Ng01-080F03.b_48_1321

seq1  GAATTCTATGATCCATTGATCCCTGTGATTTTCTGTGGTTCTCTCTTCTT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTATGATCCATTGATCCCTGTGATTTTCTGTGGTTCTCTCTTCTT  50

seq1  TGGTGAGGGGGTAGTATTCATACTTATCTGTGGGAATAATGACAAGATTT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGTGAGGGGGTAGTATTCATACTTATCTGTGGGAATAATGACAAGATTT  100

seq1  AGTAGGTAGTAAGGTAGTGTGTTGATAAATCAATGTAGGGGTTTTCTATG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTAGGTAGTAAGGTAGTGTGTTGATAAATCAATGTAGGGGTTTTCTATG  150

seq1  GTCTGAGATGTCTCTGGTTCCAAGAAGCTGGCTATGTTTCCAGTACTAGG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCTGAGATGTCTCTGGTTCCAAGAAGCTGGCTATGTTTCCAGTACTAGG  200

seq1  ACAGAGAGAAGAGGCATAAATGATATTATTTGATAAACCTTCAAGGAATT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAGAGAGAAGAGGCATAAATGATATTATTTGATAAACCTTCAAGGAATT  250

seq1  ACAGTACTTTGCATTTACCTAATATTATACACTATATATATTTACACATG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAGTACTTTGCATTTACCTAATATTATACACTATATATATTTACACATG  300

seq1  GCATATACATATCTTAAAGGAAGTTTAGCACTTGGGCTGATAATGTTCCC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCATATACATATCTTAAAGGAAGTTTAGCACTTGGGCTGATAATGTTCCC  350

seq1  CACAAGAACCATAGACAAACAAAAACTCCTGTACCAGACACAAGAAACCT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACAAGAACCATAGACAAACAAAAACTCCTGTACCAGACACAAGAAACCT  400

seq1  CCTTTCAAAGGGTTTGTTAGACTAGTCTAAGTGACTCCCAAAACAATATA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTTTCAAAGGGTTTGTTAGACTAGTCTAAGTGACTCCCAAAACAATATA  450

seq1  GATGACTGAGATAGCTCCTGGTTCCTTATCATGGATTGAGGCTGGGTCCC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATGACTGAGATAGCTCCTGGTTCCTTATCATGGATTGAGGCTGGGTCCC  500

seq1  TATTTCTAAAGACACTACACACTTGGCACACAGTTTGAGTTATATCTGGC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTTCTAAAGACACTACACACTTGGCACACAGTTTGAGTTATATCTGGC  550

seq1  CTGAAAGCTTCTTTCTTTTCCAAAGCCTACCTTCCATGGTTCCTGAAAAT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGAAAGCTTCTTTCTTTTCCAAAGCCTACCTTCCATGGTTCCTGAAAAT  600

seq1  ATTATGTAAGATTAGAAGGGAAGGAGTGAATAAAACAGACCTGCCCAGCT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTATGTAAGATTAGAAGGGAAGGAGTGAATAAAACAGACCTGCCCAGCT  650

seq1  GCAGCCCTTACAAATGACAGTTGCTGCCAGCATGGGAAGATATGCATAAA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAGCCCTTACAAATGACAGTTGCTGCCAGCATGGGAAGATATGCATAAA  700

seq1  GGTACAAGAGTGGCATCCTGTGTCACTGCCAACAAATGCTGTCTAACTGA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTACAAGAGTGGCATCCTGTGTCACTGCCAACAAATGCTGTCTAACTGA  750

seq1  ACTTGAGACCCACTTAATATGAGAAAACTCAAGCTAGATTTATCTTGAAC  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTTGAGACCCACTTAATATGAGAAAACTCAAGCTAGATTTATCTTGAAC  800

seq1  TTCATTCATGTGACTCTCCTTCCCATATTACCTACCTATCAAGAAGTATC  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCATTCATGTGACTCTCCTTCCCATATTACCTACCTATCAAGAAGTATC  850

seq1  AATCACCAAGAATTTCATGTTTTCTAAAGATGGAAAAAAAACCAATTCTT  900
      ||||||||||||||||||||||||||||||||| ||||||||||||||||
seq2  AATCACCAAGAATTTCATGTTTTCTAAAGATGG-AAAAAAACCAATTCTT  899

seq1  TCCATCAAGCCCCTCCTTTTTCTAATTGTTTACAAGCTCACTCTGTACAA  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCATCAAGCCCCTCCTTTTTCTAATTGTTTACAAGCTCACTCTGTACAA  949

seq1  ATGCTACTGATACTTATATCAGCATTTTGACGCTTTAAAAAAAATTCCGA  1000
      |||||||||||||||||||||||||||||||||||| |||||||||||||
seq2  ATGCTACTGATACTTATATCAGCATTTTGACGCTTT-AAAAAAATTCCGA  998

seq1  GATAACGTCTAGAAGGCATGTTTTGTGTGGGCTCGTAG-CTCTAAAGTCT  1049
      ||| |||||||| ||||||||||||||||||||||||| |||||||||||
seq2  GAT-ACGTCTAG-AGGCATGTTTTGTGTGGGCTCGTAGCCTCTAAAGTCT  1046

seq1  ATAGTCAGTTTAATGCCATCAATATTAAAGGCCAGGGATGAGACAGAAAG  1099
      ||||||||||| |||||||| ||| |||||||||||||||| ||||||||
seq2  ATAGTCAGTTT-ATGCCATC-ATA-TAAAGGCCAGGGATGAAACAGAAAG  1093

seq1  AACATCAGGGCAGAGAATGTGTCCTAAAGCAAGCTGCTTCTTTCATAGTA  1149
      || |||| ||||||  |||||| |||||||||||||||||||||||| | 
seq2  AAAATCAAGGCAGAAGATGTGTTCTAAAGCAAGCTGCTTCTTTCATATTG  1143

seq1  GCCAGGAAGCAAAGATAGTGGTGAG--GGGTCAGGCTCTCATTATCCCAT  1197
      |||||||  |||||||||||||| |  |||||| ||  || ||   ||||
seq2  GCCAGGAGCCAAAGATAGTGGTGTGGAGGGTCAAGCCTTCCTTTATCCAT  1193

seq1  TCAATGGCACATTTTATTAATTGGCACATTTTATTAATCTTTCTTCTACT  1247
      || |||||||| |||||  |||||||||  ||  ||| |  ||||| |||
seq2  TCCATGGCACA-TTTATATATTGGCACA--TTCATAAGC-CTCTTCCACT  1239

seq1  AAACCCCATGTCCTAAAGGTTC-CAC-TACTTCCCAATG  1284
      ||   ||||||||| ||||||| | | ||||||||||||
seq2  AA---CCATGTCCT-AAGGTTCACTCATACTTCCCAATG  1274

seq1: chr6_126666542_126666991
seq2: B6Ng01-080F03.g_76_191

seq1  TCACTTTGTAGACCAGGCTGGCCTCGAACTCAGAAATCTGCCTGCCTCTG  50
      ||||| ||||||||||||| |||||||||| ||||||| |||||| ||||
seq2  TCACTCTGTAGACCAGGCTAGCCTCGAACTTAGAAATCAGCCTGCTTCTG  50

seq1  CCTCCCAAGTGCTGGGATTAAAGGCGTGTGCCACCA-CGCCCGGCT---T  96
      ||||||||||||||||| |||||| |||  |||| | | || | ||   |
seq2  CCTCCCAAGTGCTGGGACTAAAGGTGTGCTCCACTACCACCTGACTTGGT  100

seq1  TCATGAACAATTCTAAAACCAACCCTAAGTCAGATTGCTATTTTCACCAG  146
      |  ||     || |||                                  
seq2  TTTTGTTTTTTTTTAA----------------------------------  116

seq1  CATTGGTGGTAAAATGCATCCCCTGACCCATGGACCATGAAACCACCTCT  196
                                                        
seq2  --------------------------------------------------  116

seq1  CTGCAAAGCTGGCCATACACAACTACCACCTCCACAGGCAGCTAGCCTTT  246
                                                        
seq2  --------------------------------------------------  116

seq1  CTCATTGCTGTCTTACTTCAGCCGGAGGCTTCACTCCCAGAGAGAAGCTC  296
                                                        
seq2  --------------------------------------------------  116

seq1  GCCTGAACCAGAAGCTAAAAGTCCACAGCTGCTGTTTTAATGCCCTTAGC  346
                                                        
seq2  --------------------------------------------------  116

seq1  TTGGATGTGTGAGTTACTCAGCATAAGCTAACAGATGCACTGTCAGTGTG  396
                                                        
seq2  --------------------------------------------------  116

seq1  GGAGCTGCCTTTCCTGGAGAGTTATCATTGCATATGAGTTTGTTTTTTTT  446
                                                        
seq2  --------------------------------------------------  116

seq1  TTAA  450
          
seq2  ----  116