BAC Information

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BAC

Clone NameB6Ng01-080M17
Chromosome6 (Build37)
Map Location 31,001,363 - 31,159,561
singlet/doubletdoublet
Overlap geneLOC100038973, AB041803
Upstream geneNrf1, Ube2h, Zc3hc1, 2410127E18Rik, 2700094F01Rik, 1700025E21Rik, Cpa2, Cpa4, Cpa5, Cpa1, Tsga14, Mest, Copg2, Copg2, Tsga13, Klf14
Downstream geneMkln1, Podxl, EG619959, LOC620104, 1700012A03Rik, Plxna4
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-080M17.bB6Ng01-080M17.g
ACCDH895828DH895829
length1,158794
definitionDH895828|Mus musculus domesticus DNA, BAC clone: B6Ng01-080M17, 5' end.DH895829|Mus musculus domesticus DNA, BAC clone: B6Ng01-080M17, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(31,158,398 - 31,159,561)(31,001,363 - 31,002,154)
sequence
tgtgggccatagcggtctgcagcctccagactggctccactctgcacgag
atttaggtttatcttgaaatagtatattttgtaactgctcttaggaaata
ctgaaacttagactcttaagagctgatttcacacacacgtgactgatttt
aggctttcatagatagagctgtaggcatgaatttgtttatcatgttgaaa
agacgtgctactgagatctacagtcgctttttcttgtgtttgacactggg
cacggagatgcagttctttatatgaatctttagattttattttgatttga
gccaggatcccacactttagccagggagtctctggaactcacttatgtag
cccaagccacccttaagtcctacagcagtcctccttctgtcttaggctcc
taagtgtaagaattatgagcacaaacaacagcttgctatacacagctaac
tcagagtcaattaagtttgtgacagaagtttaatttctgggataagcgga
cgtgagaatgctgggacctggaatgtccgttgccatgcctgttgtagggt
tcttctcctggcccttccttgagcgtccctttccccccttcctctagagc
actggtttttcaatttgtgggtctgcccaccttggggattgttaaacagc
cctctcccaggggtcacctaagaccaacggacaacacagatacattcata
gcagcaggactggcgagatggctcagcagttacgagcactgactgttttt
ccgaaggtcctgagttcaaatcccagcaaccacatggtggatcacaacca
tctgtgatgggatctgacgccctcttccggagtgtctgaaaacagcaaca
gtgtacttacatataataaaataaataaatctttaaaaaaagaaacagca
gcaaaattgaactttttaaagaagtaacaataaataattttatggttggt
gggctcaccacaacatgaggtccctaaagggtcacaacattgaaaagcta
aaacagtctttgttttatcttgtcttaataaaaacctttcctatatggga
gccatctgactcaatttcttccagttcttttactccacctgtgagaattg
tgttcggagcctcctttatgggcgggtggccaatgctctggtgggatcta
catgagac
gaattcatttgcagataccatggaacatcatgtgatagagttcccatgag
tcactgctttacaagccgacattctgctttctcactacagctcagtttag
tatctaaggttcaccttttttctgtcctcttttaacaattaaagaactat
taaaatgctgcaactggaaacatgcatcccggtacaccgaggtttctgtg
caagccccaggccacaaaaatgcaggaaactaagcatagggtgtggggga
aaatttcctagggctaaagaagaaatctgatttgttgtttgtgtttgtga
agtaagtatcctttaacgtctcctattagcaagctaaactacaagtgcct
tattccatagacaaagacacagcaatctgtgcctgcaggacgggcggagg
tgcagtacagcccagagctgggtaacagggaggaggtctggagaaggaag
cggcagatataagtcttcacagcaattaggcttctccataaaagcagcag
ctggctttgaacttacacacagaacaggagacatggaaactttaaagatg
cctgaattaggacccgagtggttaacaattaggtgactaaccaccctggg
atagaagccaaaagcggatccgtgattgatatcccaggtacaccctgaca
ttgacacagcccctgctggtggtgttaatgccaagtgttcagtgtgtccg
tgtcactgtgtctaacagggaaggtctgaggagcaatgagccattctctt
gggagacttaccgttttctacttcctaccttgggggggtggggg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr6_31158398_31159561
seq2: B6Ng01-080M17.b_54_1211 (reverse)

seq1  GTCTCATGTAGATCCACACAGAAGCATTGGCCAACCCCGCCCAATGAGAG  50
      ||||||||||||||| |||   |||||||||||  ||||||| || |  |
seq2  GTCTCATGTAGATCC-CACCAGAGCATTGGCCA--CCCGCCC-ATAAAGG  46

seq1  AGGCTTCG-ACACAATTCTCACAGGTTGGAGTAAAAGGAACTGAAAGAAA  99
      ||||| || |||||||||||||||| |||||||||| |||||| ||||||
seq2  AGGCTCCGAACACAATTCTCACAGG-TGGAGTAAAA-GAACTGGAAGAAA  94

seq1  TTGAGTCAGAT-GCTCCCATATAGAAAAGGTCTTTATTAAAGACAAGATA  148
      ||||||||||| |||||||||||| |||||| |||||| |||||||||||
seq2  TTGAGTCAGATGGCTCCCATATAGGAAAGGTTTTTATT-AAGACAAGATA  143

seq1  AAACAAAGACTGTTTTAGCTTTTCAATGTTGTGACCCTTTAGTGACCTCA  198
      |||||||||||||||||||||||||||||||||||||||||| |||||||
seq2  AAACAAAGACTGTTTTAGCTTTTCAATGTTGTGACCCTTTAGGGACCTCA  193

seq1  TGTTGTGGTGAGCCCACCAACCATAAAATTATTTATTGTTACTTCTTTAA  248
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTTGTGGTGAGCCCACCAACCATAAAATTATTTATTGTTACTTCTTTAA  243

seq1  AAAGTTCAATTTTGCTGCTGTTTCTTTTTTTTAAAGATTTATTTATTTTA  298
      |||||||||||||||||||||||| |||||||||||||||||||||||||
seq2  AAAGTTCAATTTTGCTGCTGTTTC-TTTTTTTAAAGATTTATTTATTTTA  292

seq1  TTATATGTAAGTACACTGTTGCTGTTTTCAGACACTCCGGAAGAGGGCGT  348
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTATATGTAAGTACACTGTTGCTGTTTTCAGACACTCCGGAAGAGGGCGT  342

seq1  CAGATCCCATCACAGATGGTTGTGATCCACCATGTGGTTGCTGGGATTTG  398
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGATCCCATCACAGATGGTTGTGATCCACCATGTGGTTGCTGGGATTTG  392

seq1  AACTCAGGACCTTCGGAAAAACAGTCAGTGCTCGTAACTGCTGAGCCATC  448
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACTCAGGACCTTCGGAAAAACAGTCAGTGCTCGTAACTGCTGAGCCATC  442

seq1  TCGCCAGTCCTGCTGCTATGAATGTATCTGTGTTGTCCGTTGGTCTTAGG  498
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCGCCAGTCCTGCTGCTATGAATGTATCTGTGTTGTCCGTTGGTCTTAGG  492

seq1  TGACCCCTGGGAGAGGGCTGTTTAACAATCCCCAAGGTGGGCAGACCCAC  548
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGACCCCTGGGAGAGGGCTGTTTAACAATCCCCAAGGTGGGCAGACCCAC  542

seq1  AAATTGAAAAACCAGTGCTCTAGAGGAAGGGGGGAAAGGGACGCTCAAGG  598
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATTGAAAAACCAGTGCTCTAGAGGAAGGGGGGAAAGGGACGCTCAAGG  592

seq1  AAGGGCCAGGAGAAGAACCCTACAACAGGCATGGCAACGGACATTCCAGG  648
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGGGCCAGGAGAAGAACCCTACAACAGGCATGGCAACGGACATTCCAGG  642

seq1  TCCCAGCATTCTCACGTCCGCTTATCCCAGAAATTAAACTTCTGTCACAA  698
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCCAGCATTCTCACGTCCGCTTATCCCAGAAATTAAACTTCTGTCACAA  692

seq1  ACTTAATTGACTCTGAGTTAGCTGTGTATAGCAAGCTGTTGTTTGTGCTC  748
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTTAATTGACTCTGAGTTAGCTGTGTATAGCAAGCTGTTGTTTGTGCTC  742

seq1  ATAATTCTTACACTTAGGAGCCTAAGACAGAAGGAGGACTGCTGTAGGAC  798
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAATTCTTACACTTAGGAGCCTAAGACAGAAGGAGGACTGCTGTAGGAC  792

seq1  TTAAGGGTGGCTTGGGCTACATAAGTGAGTTCCAGAGACTCCCTGGCTAA  848
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAAGGGTGGCTTGGGCTACATAAGTGAGTTCCAGAGACTCCCTGGCTAA  842

seq1  AGTGTGGGATCCTGGCTCAAATCAAAATAAAATCTAAAGATTCATATAAA  898
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTGTGGGATCCTGGCTCAAATCAAAATAAAATCTAAAGATTCATATAAA  892

seq1  GAACTGCATCTCCGTGCCCAGTGTCAAACACAAGAAAAAGCGACTGTAGA  948
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAACTGCATCTCCGTGCCCAGTGTCAAACACAAGAAAAAGCGACTGTAGA  942

seq1  TCTCAGTAGCACGTCTTTTCAACATGATAAACAAATTCATGCCTACAGCT  998
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTCAGTAGCACGTCTTTTCAACATGATAAACAAATTCATGCCTACAGCT  992

seq1  CTATCTATGAAAGCCTAAAATCAGTCACGTGTGTGTGAAATCAGCTCTTA  1048
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTATCTATGAAAGCCTAAAATCAGTCACGTGTGTGTGAAATCAGCTCTTA  1042

seq1  AGAGTCTAAGTTTCAGTATTTCCTAAGAGCAGTTACAAAATATACTATTT  1098
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGTCTAAGTTTCAGTATTTCCTAAGAGCAGTTACAAAATATACTATTT  1092

seq1  CAAGATAAACCTAAATCTCGTGCAGAGTGGAGCCAGTCTGGAGGCTGCAG  1148
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAGATAAACCTAAATCTCGTGCAGAGTGGAGCCAGTCTGGAGGCTGCAG  1142

seq1  ACCGCTATGGCCCACA  1164
      ||||||||||||||||
seq2  ACCGCTATGGCCCACA  1158

seq1: chr6_31001363_31002154
seq2: B6Ng01-080M17.g_71_864

seq1  GAATTCATTTGCAGATACCATGGAACATCATGTGATAGAGTTCCCATGAG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCATTTGCAGATACCATGGAACATCATGTGATAGAGTTCCCATGAG  50

seq1  TCACTGCTTTACAAGCCGACATTCTGCTTTCTCACTACAGCTCAGTTTAG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCACTGCTTTACAAGCCGACATTCTGCTTTCTCACTACAGCTCAGTTTAG  100

seq1  TATCTAAGGTTCACCTTTTTTCTGTCCTCTTTTAACAATTAAAGAACTAT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATCTAAGGTTCACCTTTTTTCTGTCCTCTTTTAACAATTAAAGAACTAT  150

seq1  TAAAATGCTGCAACTGGAAACATGCATCCCGGTACACCGAGGTTTCTGTG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAAATGCTGCAACTGGAAACATGCATCCCGGTACACCGAGGTTTCTGTG  200

seq1  CAAGCCCCAGGCCACAAAAATGCAGGAAACTAAGCATAGGGTGTGGGGGA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAGCCCCAGGCCACAAAAATGCAGGAAACTAAGCATAGGGTGTGGGGGA  250

seq1  AAATTTCCTAGGGCTAAAGAAGAAATCTGATTTGTTGTTTGTGTTTGTGA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATTTCCTAGGGCTAAAGAAGAAATCTGATTTGTTGTTTGTGTTTGTGA  300

seq1  AGTAAGTATCCTTTAACGTCTCCTATTAGCAAGCTAAACTACAAGTGCCT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTAAGTATCCTTTAACGTCTCCTATTAGCAAGCTAAACTACAAGTGCCT  350

seq1  TATTCCATAGACAAAGACACAGCAATCTGTGCCTGCAGGACGGGCGGAGG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTCCATAGACAAAGACACAGCAATCTGTGCCTGCAGGACGGGCGGAGG  400

seq1  TGCAGTACAGCCCAGAGCTGGGTAACAGGGAGGAGGTCTGGAGAAGGAAG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCAGTACAGCCCAGAGCTGGGTAACAGGGAGGAGGTCTGGAGAAGGAAG  450

seq1  CGGCAGATATAAGTCTTCACAGCAATTAGGCTTCTCCATAAAAGCAGCAG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGGCAGATATAAGTCTTCACAGCAATTAGGCTTCTCCATAAAAGCAGCAG  500

seq1  CTGGCTTTGAACTTACACACAGAACAGGAGACATGGAAACTTTAAAGATG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGGCTTTGAACTTACACACAGAACAGGAGACATGGAAACTTTAAAGATG  550

seq1  CCTGAATTAGGACCCGAGTGGTTAACAATTAGGTGACTAACCACCCTGGG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTGAATTAGGACCCGAGTGGTTAACAATTAGGTGACTAACCACCCTGGG  600

seq1  ATAGAAGCCAAAAGCGGATCCGTGATTGATATCCCAGGTACACCCTGACA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAGAAGCCAAAAGCGGATCCGTGATTGATATCCCAGGTACACCCTGACA  650

seq1  TTGACACAGCCCCTGCTGGTGGTGTTAATGCCAAGTGTTCAGTGTGTCCG  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGACACAGCCCCTGCTGGTGGTGTTAATGCCAAGTGTTCAGTGTGTCCG  700

seq1  TGTCACTGTGTCTAACAGGGAAGGTCTGAGGAGCAATGAGCCATTCTCTT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTCACTGTGTCTAACAGGGAAGGTCTGAGGAGCAATGAGCCATTCTCTT  750

seq1  GGGAGACTTACCG-TTTCTACTTCCTACCTT-GGGGGGTGGGGG  792
      ||||||||||||| ||||||||||||||||| ||||||||||||
seq2  GGGAGACTTACCGTTTTCTACTTCCTACCTTGGGGGGGTGGGGG  794