BAC Information

Click to search

BAC

Clone NameB6Ng01-080N09
Chromosome6 (Build37)
Map Location 16,929,146 - 16,930,204
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC100041116, Tcfec, EG435881
Downstream geneTes, EG232599, Cav2, Cav1, Met, Capza2, St7
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-080N09.bB6Ng01-080N09.g
ACCDH895860DH895861
length1,1951,065
definitionDH895860|Mus musculus domesticus DNA, BAC clone: B6Ng01-080N09, 5' end.DH895861|Mus musculus domesticus DNA, BAC clone: B6Ng01-080N09, 3' end.
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
gaattccagtcctgacttcctttggtgatgaacagcagtgtggaaatgta
agctgaataaaccctttcctccccaacttgctttttggttatgatgtttg
tgcaggaatagaaacctaagacaggggcattgcttaacatgagaaagacc
ctgggtttatttccagcactttggaaaacaaccaaacagattgatacttc
ttaaattgaaaaggaagcatttcttcttgtgctagcatttccaaaggaga
atactacgtggaggtcagtaaaaggcacaagatgaattacttgaaatata
tgtcacttgaagtcactcatctaaacctcaatgcattctcagagagacaa
ttaacctttgttgtcatgcagtacctggtctctcttgtgctcaatagatg
tcatagctggaaaagggtgctgcctaatgggtagtggttgaagagccctg
gtgaagaggtgatgtaaagacagaccatcacactgatgaaaatggaagag
tatcctccctcctctgcttacacttctgaccttcctatcctattctttgt
ttcgggaaaaagaacggcacattcctgggttatgccctgttactctctgc
ccaggtggactggttgaccatgcactagtgggaaatagctgacctgtttt
tatctcagggagactccgactcagtgtttcaaaatctctccacccagctc
gctaagtgacttgtgggtcactaccacaccagtcccatgcttcaaatccc
ccacggcgttttgtggagcacctcaggcaaaccctggctttcccactata
cctttctctattgaacccagaccagccacagtgtgaaggaaaatgtaaca
catagttcagaaacaatggtaactcaatcactagacacaacaactaaaat
cctagcttgtaagccttggtggtgaatcctaatggatccaccattgaaac
taggagatattctttattccatcttgtcctcagctatccctgtccaaaag
gcctcactctctctgctctctctcgctgtcaacggagtcctcttattctc
ccagtgatggtcctttcttatagggatgtcataggagtcacctgatgtga
atctcttcctcgacccctcagaaggaaaacggacaggccatccaacaatc
tttggtgaatgatttgcttatattttgtttttgtttccggctcgg
gaattccaaaatggaacatgggacataattacaaaagctttcaagggcag
tatttgcttcaggtgcagtgctaggaagaggggaaatctggatggaggtt
ggtggcttgtccctgatcatggaataagttgttaatatactttcatagga
agcaactggaagcctgctgcagaggtgtgaattacggacacattaggcag
ctgcactcttagaaaaatcaggactgtgagaaatttctgagcattcctcc
tctggcatataattcaaacaactttgagtatgaatggaaatattttaccc
ccaaaatgtgaataataaaacaaataaaatattaagtaatctacttaaat
gaaaaaagtctgcagaataagtaatgtgaatttgaaaaaaaaaatctcat
taagtgacgccagaaatctatttctagtgcagctgcaagtagctctgtaa
gtgtgtctccagaaaaataattagactagaggagcaactgattctgccta
ttatcaatggaaatttttcccctgatttttctgatattttcaaatgaatt
atactatttatttatatgattatatatatatatcatatatgatatctcta
tatagatgtcatatatataattttaacatagagtgttatatgtagagaaa
gaaagagagatagataccgatatatattacaattttcacaacagaagagc
aggatgtatgcaaggcactgcgggggtaaacaaagaatagatataccaga
tcttaactgctatttgttgtatgcaagactataatcaggaatgtacacaa
gaaacactaaatggccttatggtgacccctacactgtgcattatacacac
catgtgcactgtcacacctttaggaagactgaagacccacggtggcaaag
gcgttattctacaacatgctggggatacagacgagtcagctaaagagcat
gggagactcgaggctgaagaaagggctccgtggtttcggagtcaaactgc
tcctgcacataactcacatttgctccccacacccacacattcagttcacg
agtgctcgtactaca
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr6_16929146_16930204
seq2: B6Ng01-080N09.g_70_1129

seq1  GAATTCCAAAATGGAACATGGGACATAATTACAAAAGCTTTCAAGGGCAG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCAAAATGGAACATGGGACATAATTACAAAAGCTTTCAAGGGCAG  50

seq1  TATTTGCTTCAGGTGCAGTGCTAGGAAGAGGGGAAATCTGGATGGAGGTT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTTGCTTCAGGTGCAGTGCTAGGAAGAGGGGAAATCTGGATGGAGGTT  100

seq1  GGTGGCTTGTCCCTGATCATGGAATAAGTTGTTAATATACTTTCATAGGA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTGGCTTGTCCCTGATCATGGAATAAGTTGTTAATATACTTTCATAGGA  150

seq1  AGCAACTGGAAGCCTGCTGCAGAGGTGTGAATTACGGACACATTAGGCAG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCAACTGGAAGCCTGCTGCAGAGGTGTGAATTACGGACACATTAGGCAG  200

seq1  CTGCACTCTTAGAAAAATCAGGACTGTGAGAAATTTCTGAGCATTCCTCC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGCACTCTTAGAAAAATCAGGACTGTGAGAAATTTCTGAGCATTCCTCC  250

seq1  TCTGGCATATAATTCAAACAACTTTGAGTATGAATGGAAATATTTTACCC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGGCATATAATTCAAACAACTTTGAGTATGAATGGAAATATTTTACCC  300

seq1  CCAAAATGTGAATAATAAAACAAATAAAATATTAAGTAATCTACTTAAAT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAAAATGTGAATAATAAAACAAATAAAATATTAAGTAATCTACTTAAAT  350

seq1  GAAAAAAGTCTGCAGAATAAGTAATGTGAATTTGAAAAAAAAAATCTCAT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAAAAAGTCTGCAGAATAAGTAATGTGAATTTGAAAAAAAAAATCTCAT  400

seq1  TAAGTGACGCCAGAAATCTATTTCTAGTGCAGCTGCAAGTAGCTCTGTAA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAGTGACGCCAGAAATCTATTTCTAGTGCAGCTGCAAGTAGCTCTGTAA  450

seq1  GTGTGTCTCCAGAAAAATAATTAGACTAGAGGAGCAACTGATTCTGCCTA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGTGTCTCCAGAAAAATAATTAGACTAGAGGAGCAACTGATTCTGCCTA  500

seq1  TTATCAATGGAAATTTTTCCCCTGATTTTTCTGATATTTTCAAATGAATT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTATCAATGGAAATTTTTCCCCTGATTTTTCTGATATTTTCAAATGAATT  550

seq1  ATACTATTTATTTATATGATTATATATATATATCATATATGATATCTCTA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATACTATTTATTTATATGATTATATATATATATCATATATGATATCTCTA  600

seq1  TATAGATGTCATATATATAATTTTAACATAGAGTGTTATATGTAGAGAAA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATAGATGTCATATATATAATTTTAACATAGAGTGTTATATGTAGAGAAA  650

seq1  GAAAGAGAGATAGATACCGATATATATTACAA-TTTCACAACAGAAGAGC  699
      |||||||||||||||||||||||||||||||| |||||||||||||||||
seq2  GAAAGAGAGATAGATACCGATATATATTACAATTTTCACAACAGAAGAGC  700

seq1  AGGATGTATGCAAGGCACTGCGGGGGTAAACAAAGAATAGATATACCAGA  749
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGATGTATGCAAGGCACTGCGGGGGTAAACAAAGAATAGATATACCAGA  750

seq1  TCTTAACTGCTATTTGTTGTATGCAAGACTATAATCAGGAATGTACACAA  799
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTAACTGCTATTTGTTGTATGCAAGACTATAATCAGGAATGTACACAA  800

seq1  GAAACACTAAATGGCCTTATGGTGACCCCTACACTGTGCATTATACACAC  849
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAACACTAAATGGCCTTATGGTGACCCCTACACTGTGCATTATACACAC  850

seq1  CATGTGCACTGTCACACCTTTAGGAAGACTGAAGACCCACGGTGGCAAAG  899
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATGTGCACTGTCACACCTTTAGGAAGACTGAAGACCCACGGTGGCAAAG  900

seq1  GCGTTATTCTAC-ACATGCTGGGGATACAGACGAGTCAGCTAAAGAGCAT  948
      |||||||||||| |||||||||||||||||||||||||||||||||||||
seq2  GCGTTATTCTACAACATGCTGGGGATACAGACGAGTCAGCTAAAGAGCAT  950

seq1  -GGAGACTCGAGGCTGAAGAAAGGGCTCCGTGG-TTCGGAGTCAAAACTG  996
       |||||||||||||||||||||||||||||||| ||||||||| ||||||
seq2  GGGAGACTCGAGGCTGAAGAAAGGGCTCCGTGGTTTCGGAGTC-AAACTG  999

seq1  CTCCTGCACATTACTCACATTTGCTTCCCCACACCCACACCATTCAGTTC  1046
      ||||||||||| |||||||||||| |||||||||||||| ||||||||||
seq2  CTCCTGCACATAACTCACATTTGC-TCCCCACACCCACA-CATTCAGTTC  1047

seq1  ACGAGTGCTCGTA  1059
      |||||||||||||
seq2  ACGAGTGCTCGTA  1060