BAC Information

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BAC

Clone NameB6Ng01-081A24
Chromosome6 (Build37)
Map Location 77,573,982 - 77,575,024
singlet/doubletsinglet
Overlap geneCtnna2
Upstream geneLOC100042956, Lrrtm1
Downstream geneLOC668169, EG434050, Pap, Reg3d, Reg3a, Reg2, Reg1, Reg3g, LOC621716, Ppia-ps6_789.1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-081A24.bB6Ng01-081A24.g
ACCDH896019DH896020
length7981,069
definitionDH896019|Mus musculus domesticus DNA, BAC clone: B6Ng01-081A24, 5' end.DH896020|Mus musculus domesticus DNA, BAC clone: B6Ng01-081A24, 3' end.
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
gaattctttgttcagctctgagctccattttttaatggggttatttgatt
ttctgaagtccaccttcttgagttctttatatatgttggatattagtccc
ctatctgatttgggataggtaaagatcctttcccaatctgttggtggcct
ttttgtcttattgacggtgtcttttgctttgcagaagctttgcaatttta
tgaggtcccatttatcgataattgatcttacagcacaagccattgctgtt
ctattcaggaatttttcccctgtacccatatcttcaaggcttttccctac
tttctcctctataagtttcagtgtctctggttttatgtggagttccttaa
tccacttagatttgaccttagtacaaggagatagaaatggatccattcac
attcttctacgtgataactgccagttgtgccagcaccatttgttgaaatt
gctgtcttttttccactggatggttttagctccctttgtcaaagatcaag
tgaccataggtgtgtagattcatctctgggtcttcaattctgttccattg
gtctactttgtctgtcactataccagtaccatgcagttttgatcacaatt
gctctgtagtacagttttggtcccggcattggtgattccaccagaggttc
ttttatccttgagaagagtttttgctattctcgggttttttgttaattca
agatgaatctgccgattcccttttctaattcggtgaagaatatgatttgg
aatttttgatgggggattttcattttaatctctgtaggattgctcttg

gaattcaaacagtggatgctgaggtaagttagtttcttctctgcctcata
tgaaaactgacctgcaggaagacggcaatggaattctcactaccatgatt
tgccagtcataacttgaaaataagtattctgtcctgggctgccataccac
agcacaggctgaagctgacagacaagcaaggtgctttaaaaacccatgtt
gagaattgtggtgttagaaaaatctttatttttaagaatatataatgttt
taactattaaaatcacatattgatcccaatggtttacccacacagacaca
cacacagacacacaccactgtaaaaaggaacacaccttctagctagagac
actctaataaatagctgtgtccataggatttttaacttaaggactgggat
ggtcaatttttactgtcagattgacacatcctacaatcacttttgaaagg
agtgtcgtctgaaacacttatttatatctagttggaccatcagcttctct
gtagtaattatctttgacttttaagacatatagataagtctggtctgtag
taatagaaaattaaaaatagaaaaaacagattaccagtaaaattgcaaat
agtaaggaagaggaaaaacaaaaactcaattgaaaaacagtatgaaaata
tttgttcatttatgtataacatttatatatacatgcatgtaatacacata
cacagccttgacattttgactacaaattacttttccctatatgctcactt
gcaggattcatcttcatagaatggtacattgaccttaataaggaccagtc
tttgccctgatgtcactttcagattattttggctgccccagaatggcacc
agggatctgtcctgtatggagaagaagaatcagaagtgatagccgcctga
catccccctgttctaagctgtcatacccttgggctgaagggcaaatcagg
ccatttaatcctcttcataaaggggtcggcacattccccgcaggtcacta
caatggtcacattcctcaagtctttgaatgaccttggctaaaaaaaaata
tcattctttgggaaaggtc
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr6_77573982_77575024
seq2: B6Ng01-081A24.g_70_1138

seq1  GAATTCAAACAGTGGATGCTGAGGTAAGTTAGTTTCTTCTCTGCCTCATA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCAAACAGTGGATGCTGAGGTAAGTTAGTTTCTTCTCTGCCTCATA  50

seq1  TGAAAACTGACCTGCAGGAAGACGGCAATGGAATTCTCACTACCATGATT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAAAACTGACCTGCAGGAAGACGGCAATGGAATTCTCACTACCATGATT  100

seq1  TGCCAGTCATAACTTGAAAATAAGTATTCTGTCCTGGGCTGCCATACCAC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCCAGTCATAACTTGAAAATAAGTATTCTGTCCTGGGCTGCCATACCAC  150

seq1  AGCACAGGCTGAAGCTGACAGACAAGCAAGGTGCTTTAAAAACCCATGTT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCACAGGCTGAAGCTGACAGACAAGCAAGGTGCTTTAAAAACCCATGTT  200

seq1  GAGAATTGTGGTGTTAGAAAAATCTTTATTTTTAAGAATATATAATGTTT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGAATTGTGGTGTTAGAAAAATCTTTATTTTTAAGAATATATAATGTTT  250

seq1  TAACTATTAAAATCACATATTGATCCCAATGGTTTACCCACACAGACACA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAACTATTAAAATCACATATTGATCCCAATGGTTTACCCACACAGACACA  300

seq1  CACACAGACACACACCACTGTAAAAAGGAACACACCTTCTAGCTAGAGAC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACACAGACACACACCACTGTAAAAAGGAACACACCTTCTAGCTAGAGAC  350

seq1  ACTCTAATAAATAGCTGTGTCCATAGGATTTTTAACTTAAGGACTGGGAT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTCTAATAAATAGCTGTGTCCATAGGATTTTTAACTTAAGGACTGGGAT  400

seq1  GGTCAATTTTTACTGTCAGATTGACACATCCTACAATCACTTTTGAAAGG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTCAATTTTTACTGTCAGATTGACACATCCTACAATCACTTTTGAAAGG  450

seq1  AGTGTCGTCTG-AACACTTATTTATATCTAGTTGGACCATCAGCTTCTCT  499
      ||||||||||| ||||||||||||||||||||||||||||||||||||||
seq2  AGTGTCGTCTGAAACACTTATTTATATCTAGTTGGACCATCAGCTTCTCT  500

seq1  GTAGTAATTATC-TTGACTTTTAAGACATATAGATAAGTCTGGTCTGTAG  548
      |||||||||||| |||||||||||||||||||||||||||||||||||||
seq2  GTAGTAATTATCTTTGACTTTTAAGACATATAGATAAGTCTGGTCTGTAG  550

seq1  TAATAGAAA--TTAAAATAG-AAAAACAGATTACCAGTAAAATTGCAAAT  595
      |||||||||  | ||||||| |||||||||||||||||||||||||||||
seq2  TAATAGAAAATTAAAAATAGAAAAAACAGATTACCAGTAAAATTGCAAAT  600

seq1  AGTAA-GAAGAGGAAAA--CAAAACTCAA-TGAAAAACAGTATG-AAATA  640
      ||||| |||||||||||   ||||||||| |||||||||||||| |||||
seq2  AGTAAGGAAGAGGAAAAACAAAAACTCAATTGAAAAACAGTATGAAAATA  650

seq1  TTTGTTCATGTATGTAT-ACA-TTATATATACATGCATGT-ATACACATA  687
      ||||||||| ||||||| ||| |||||||||||||||||| |||||||||
seq2  TTTGTTCATTTATGTATAACATTTATATATACATGCATGTAATACACATA  700

seq1  CACAGCC-TGACATTTTGACTACAAATTAC-TTTCCCTATATGCTCAC-T  734
      ||||||| |||||||||||||||||||||| ||||||||||||||||| |
seq2  CACAGCCTTGACATTTTGACTACAAATTACTTTTCCCTATATGCTCACTT  750

seq1  GCAGGA-TCATC-TCATAG-ATGGTACAATGA-CATAATAAAGACCAGTC  780
      |||||| ||||| |||||| |||||||| ||| | |||||| ||||||||
seq2  GCAGGATTCATCTTCATAGAATGGTACATTGACCTTAATAAGGACCAGTC  800

seq1  TTTG-CCTTATGTCACTTTCAGATTATTTT-GCTGCCCCAG-ATTGCAAC  827
      |||| ||| ||||||||||||||||||||| |||||||||| || ||| |
seq2  TTTGCCCTGATGTCACTTTCAGATTATTTTGGCTGCCCCAGAATGGCACC  850

seq1  AGGGATTCTGTCCTGTAGTGAGAAG-AGAATCAGAAGTGATAGCAG-CTG  875
      ||||| |||||||||||  |||||| |||||||||||||||||| | |||
seq2  AGGGA-TCTGTCCTGTATGGAGAAGAAGAATCAGAAGTGATAGCCGCCTG  899

seq1  ACATCCACCTGTCATAAGCTGTCATACCCTTGGTGCTG-ATGGCAAATCA  924
      |||||| |||||  ||||||||||||||||||| |||| | |||||||| 
seq2  ACATCCCCCTGTTCTAAGCTGTCATACCCTTGG-GCTGAAGGGCAAATC-  947

seq1  AGGCCATT--ATCCTTCTTCATAAAAGTGAGTCTGCAC---TCCCGCAGG  969
      ||||||||  |||| ||||||||||   | ||| ||||    ||||||||
seq2  AGGCCATTTAATCC-TCTTCATAAA--GGGGTCGGCACATTCCCCGCAGG  994

seq1  TCACTACAAATGTCACCTTTCTTCAAGTCCTTGAATGACCTTTGCT-AAA  1018
      |||||||||  |||| | ||| ||||||| |||||||||||| ||| |||
seq2  TCACTACAATGGTCA-CATTCCTCAAGTCTTTGAATGACCTTGGCTAAAA  1043

seq1  AAAAATA-CAATCTTTGGGAAATGTC  1043
      ||||||| || ||||||||||| |||
seq2  AAAAATATCATTCTTTGGGAAAGGTC  1069


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