BAC Information

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BAC

Clone NameB6Ng01-081J01
Chromosome6 (Build37)
Map Location 119,752,421 - 119,884,269
singlet/doubletdoublet
Overlap geneErc1, LOC666887, Rad52, Wnk1
Upstream geneCacna1c, Dcp1b, Cacna2d4, Lrtm2, Adipor2, Wnt5b, Fbxl14
Downstream geneEG406236, Ninj2, B4galnt3, Ccdc77, Jarid1a, Il17ra, Cecr6, Cecr5, 1700072O05Rik, Cecr2, Slc25a18, Atp6v1e1, Bcl2l13, Bid
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-081J01.bB6Ng01-081J01.g
ACCDH896382DH896383
length312916
definitionDH896382|Mus musculus domesticus DNA, BAC clone: B6Ng01-081J01, 5' end.DH896383|Mus musculus domesticus DNA, BAC clone: B6Ng01-081J01, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(119,752,421 - 119,752,732)(119,883,356 - 119,884,269)
sequence
attaaaataattaagaaaattttgttatttagcactgaagaaataaaaag
aaaaactgttttaaaagttagcttgtcaaaatagacatatttggtagttt
ttcttccaatcaccaataagcaattaatacaaaccataaacttataataa
tctaatactatgaaaacaattcaacaagcctaccattagaacaaacaaat
ataatttattccatatgtgtaaaacttagaggcttgctttcataataata
gataagcacttgagtaactaaaaagaagggaaagaggagagggggagggg
aaggaaaggggg
gaattcaaactgaccaccaatttccagaaacattaaaatagaaatattgc
catacttggtacaaaaggaagatgaatagcttactgccatcagctgagta
gaaagagtctgagttgttaagcaatgactagccattgaacttagcagaaa
aactgagtagggattagaaccactgacctgcttgcttccagccatctgat
aggatagcttcttgtttgttgtttagacagcacctcattttatagcctag
actgtactgatctgtaactcaacgtggaacccggctaacctgggtccttc
cagaagtcctcttgcttcagactcccacaagcatgaatttacatgaatta
caggtgtaagtcatcaaacccagctctgaaataacttattttgaaagaat
aaccattatacctgcagcctatatgtatagctgatttaagacttagacct
taacctttcaccctaagccaagacttgtggacaaaattctaaggagttgc
tggcagtttttaaaaactaatgtggttttttttttttttttttttttttt
ttccaatgtgctttttaaacttccaagcatgatagcagcattctgaaatg
actagctctaacatctttttttttttttaatacatagtgaacattgattt
agaaaataagaaaatttcagaaagtgggacagggtctgagagcggaatat
cttaagatcaaattcttgatccgtactctacttaccaaaatactgttttt
gtttagtttattcaaaacttactgcatgggagctttttgtaactaaaatt
gagaactgaaaggaaaaactatgtatatcagtagttaaaagccctagctg
ccttttgcagaaggatctgtgttttatttcccgcactcacgtggcggctc
ccagccacccagggga
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr6_119752421_119752732
seq2: B6Ng01-081J01.b_54_365

seq1  ATTAAAATAATTAAGAAAATTTTGTTATTTAGCACTGAAGAAATAAAAAG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTAAAATAATTAAGAAAATTTTGTTATTTAGCACTGAAGAAATAAAAAG  50

seq1  AAAAACTGTTTTAAAAGTTAGCTTGTCAAAATAGACATATTTGGTAGTTT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAACTGTTTTAAAAGTTAGCTTGTCAAAATAGACATATTTGGTAGTTT  100

seq1  TTCTTCCAATCACCAATAAGCAATTAATACAAACCATAAACTTATAATAA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTTCCAATCACCAATAAGCAATTAATACAAACCATAAACTTATAATAA  150

seq1  TCTAATACTATGAAAACAATTCAACAAGCCTACCATTAGAACAAACAAAT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTAATACTATGAAAACAATTCAACAAGCCTACCATTAGAACAAACAAAT  200

seq1  ATAATTTATTCCATATGTGTAAAACTTAGAGGCTTGCTTTCATAATAATA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAATTTATTCCATATGTGTAAAACTTAGAGGCTTGCTTTCATAATAATA  250

seq1  GATAAGCACTTGAGTAACTAAAAAGAAGGGAAAGAGGAGAGGGGGAGGGG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATAAGCACTTGAGTAACTAAAAAGAAGGGAAAGAGGAGAGGGGGAGGGG  300

seq1  AAGGAAAGGGGG  312
      ||||||||||||
seq2  AAGGAAAGGGGG  312

seq1: chr6_119883356_119884269
seq2: B6Ng01-081J01.g_68_983 (reverse)

seq1  TCCCCTGGGATGGCTGGGAGCCTGCACGTGAGTGCTGGGAATTAAACCCA  50
      ||||||||| ||||||||||||  ||||||||||| || ||| |||| ||
seq2  TCCCCTGGG-TGGCTGGGAGCCGCCACGTGAGTGCGGGAAATAAAACACA  49

seq1  GATCC-TCTGCAAAA-GCAGCTAGTGCTCTTAACTACTGATATACATAGT  98
      ||||| ||||||||| |||||||| ||| |||||||||||||||||||||
seq2  GATCCTTCTGCAAAAGGCAGCTAGGGCTTTTAACTACTGATATACATAGT  99

seq1  CTCTCCTTTCAGTTCTCAATTTTAGTTACTAAAAGCT-CCATGCAGTAAG  147
       | |||||||||||||||||||||||||| ||||||| ||||||||||||
seq2  TTTTCCTTTCAGTTCTCAATTTTAGTTACAAAAAGCTCCCATGCAGTAAG  149

seq1  TTTTGAATAATACTAAAC-AAAACAGTATTTTGGTAAGTAGAGTACGGAT  196
      |||||||||| ||||||| |||||||||||||||||||||||||||||||
seq2  TTTTGAATAA-ACTAAACAAAAACAGTATTTTGGTAAGTAGAGTACGGAT  198

seq1  CAAGAATTTGATCTTAAGATATTCCGCTCTCAGACCCTGTCCCACTCTCT  246
      |||||||||||||||||||||||||||||||||||||||||||||| |||
seq2  CAAGAATTTGATCTTAAGATATTCCGCTCTCAGACCCTGTCCCACTTTCT  248

seq1  GAAATTTTCTTATTTTCTAAATCAATGTTCACTATGTATTAAAAAAAAAA  296
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAATTTTCTTATTTTCTAAATCAATGTTCACTATGTATTAAAAAAAAAA  298

seq1  AAAGATGTTAGAGCTAGTCATTTCAGAATGCTGCTATCATGCTTGGAAGT  346
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGATGTTAGAGCTAGTCATTTCAGAATGCTGCTATCATGCTTGGAAGT  348

seq1  TTAAAAAGCACATTGGAAAAAAAAAAAAAAAAAAAAAAAAAAACCACATT  396
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAAAAAGCACATTGGAAAAAAAAAAAAAAAAAAAAAAAAAAACCACATT  398

seq1  AGTTTTTAAAAACTGCCAGCAACTCCTTAGAATTTTGTCCACAAGTCTTG  446
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTTTTTAAAAACTGCCAGCAACTCCTTAGAATTTTGTCCACAAGTCTTG  448

seq1  GCTTAGGGTGAAAGGTTAAGGTCTAAGTCTTAAATCAGCTATACATATAG  496
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTTAGGGTGAAAGGTTAAGGTCTAAGTCTTAAATCAGCTATACATATAG  498

seq1  GCTGCAGGTATAATGGTTATTCTTTCAAAATAAGTTATTTCAGAGCTGGG  546
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTGCAGGTATAATGGTTATTCTTTCAAAATAAGTTATTTCAGAGCTGGG  548

seq1  TTTGATGACTTACACCTGTAATTCATGTAAATTCATGCTTGTGGGAGTCT  596
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGATGACTTACACCTGTAATTCATGTAAATTCATGCTTGTGGGAGTCT  598

seq1  GAAGCAAGAGGACTTCTGGAAGGACCCAGGTTAGCCGGGTTCCACGTTGA  646
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAGCAAGAGGACTTCTGGAAGGACCCAGGTTAGCCGGGTTCCACGTTGA  648

seq1  GTTACAGATCAGTACAGTCTAGGCTATAAAATGAGGTGCTGTCTAAACAA  696
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTACAGATCAGTACAGTCTAGGCTATAAAATGAGGTGCTGTCTAAACAA  698

seq1  CAAACAAGAAGCTATCCTATCAGATGGCTGGAAGCAAGCAGGTCAGTGGT  746
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAACAAGAAGCTATCCTATCAGATGGCTGGAAGCAAGCAGGTCAGTGGT  748

seq1  TCTAATCCCTACTCAGTTTTTCTGCTAAGTTCAATGGCTAGTCATTGCTT  796
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTAATCCCTACTCAGTTTTTCTGCTAAGTTCAATGGCTAGTCATTGCTT  798

seq1  AACAACTCAGACTCTTTCTACTCAGCTGATGGCAGTAAGCTATTCATCTT  846
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACAACTCAGACTCTTTCTACTCAGCTGATGGCAGTAAGCTATTCATCTT  848

seq1  CCTTTTGTACCAAGTATGGCAATATTTCTATTTTAATGTTTCTGGAAATT  896
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTTTTGTACCAAGTATGGCAATATTTCTATTTTAATGTTTCTGGAAATT  898

seq1  GGTGGTCAGTTTGAATTC  914
      ||||||||||||||||||
seq2  GGTGGTCAGTTTGAATTC  916