BAC Information

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BAC

Clone NameB6Ng01-081O11
Chromosome6 (Build37)
Map Location 90,037,620 - 90,201,631
singlet/doubletdoublet
Overlap geneV1rb1, V1ra1, LOC625050, V1ra7, V1ra8, V1rb3, LOC100043191, V1r-ps5
Upstream gene4933427D06Rik, Gm1965, LOC100043153, LOC100043159, EG624483, EG624491, LOC665547, EG624537, Gm839, 4930512J16Rik, Plxna1, Chchd6, Txnrd3, V1r-ps1, V1rb7, V1rb9, V1r-ps2, V1r-ps3, V1ra6, V1ra5, V1rb4, V1r-ps4, V1ra2, V1rb8, V1ra4, V1ra3, V1rb2
Downstream geneV1ra9, BC048671, Chst13, Uroc1, Zxdc, Ccdc37, Klf15, Aldh1l1, Slc41a3, Iqsec1, LOC100043646, EG665685, Nup210, Hdac11, Fbln2
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-081O11.bB6Ng01-081O11.g
ACCDH896616DH896617
length1,182937
definitionDH896616|Mus musculus domesticus DNA, BAC clone: B6Ng01-081O11, 5' end.DH896617|Mus musculus domesticus DNA, BAC clone: B6Ng01-081O11, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(90,200,425 - 90,201,631)(90,037,620 - 90,038,555)
sequence
gaattcctagaggaattttaatataaccaccaagcaaataacccacattt
tgataattaaagcaattcaaagtagttaaagtaatctaaacaaatattaa
ccaccaagaaagtgcttctttacctcctcctgcttttcaacctataatta
aagatcaaatgcctcaatattttatacatctatgtatacttaaatccttc
ctactatggagattaatatctctgttggtacatattgtagtttgcttctt
tctctttatataattttcaaggcctaaatttctactgtctgaaataggca
aggcttcctttccctgcttttcaatcaaaaatttaagaatcaaaagcctc
aatattcattatctatatctacttactgtataaggctatttccaggctct
atttttgtcataacaggctaaacagtcccagaaatcccaggtgaagcatg
ttcaaagattttgagagtttgccctggtaagacataaatatctctaaagc
atttttttttcagtcaatctcccctacttcttccttctgtggagcttaat
atctctgtatacttgagaacatataaaccattactaatatactctcttct
atccttaaaaggaattaaatcaatttcataaatctctatcctttatttat
ctgttggctgggggcaggcagcttttattgtctgcctctcattgccttcc
tcctagcacctgttcagggaaccagacagccacttttcacagcagaggct
cccactgtttctgacctgaggctctctctgatggctctgttcttttgttc
taatttcctggcttgctcacgaaccacgtgactctcctctgtagctgaga
aactatttctcctctcctcctagacttacacatcaattatgtgtgtgtgt
gtgttccatccagaatctctaaataatttttaaaatgagttctcccccaa
cattgttgcatgccatcctgtagcagattggctagtcttctttggctcat
ggaaaggttgcacatggcacatctatctgttcaggagcattaggattttg
tgatgaagaaaacatacctaccacaccacatcacacacctaccacaacca
gtactttaatgcttggctagctcagactgggcattctacctccccagcta
gacacattttcctctgtatactctaagcctac
gaattcattgtggtttgtatctgaggagggatcatactcaccagagtgtt
tttctacagaaattatgcatctgtctagaatgtgcatgctttacttattc
tttttgttgtttgatttttcacaacagggtttctctgtgtacctctggat
gtcctggaacatactctgtagaccagtttggccatgaaattgaaaaattg
aacatccacaaacctcctctgcctttgaaatggtggaattaatgtgtctg
tcaccattgcttggcactgatacttttgatatacagaattgtatgattgt
taaatttgtagatagcagcatgactagagaaatggcagctgtgtctttcc
aggtaagctggtgtatatgatggcaggaaatcacatcactgtaagttttc
tctttgctcctgtggaattccacctccagaaagataaggtttcccagtgc
tttcaaagccagaatccctgaagccatggtgttgacaatattgctgagga
atcacaatctctgtgcctgcctgactttcctaagagcttcagttttgtag
gcctgaggtttctgaagtgaccctgacactagcacagcctgcacctgctc
tgcagagctgacaggacaatctatgtttgttcataaagatctagtttctt
ttccttttttttccttttctcttcttttctttccttttcattcatctctt
tttttcccactttcttgttttcctttcctcttttatttactcttctattt
tattttctattctgattagctcagtgtagtatacaaaaaagtacatctcc
agatacatttagagaaatcattttagattctttgtacctctagttcagct
agtaccaatgtgcacatgatgccagctagtactttaaactctacaggtgt
tttcttaccagggaatggagtgcataatacactcagt
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr6_90200425_90201631
seq2: B6Ng01-081O11.b_50_1231 (reverse)

seq1  GTAGGCTTTTAAGGAGTATTACAGGAGGAAAATGTGTGCTAGCTGTGGGG  50
      ||||||||     ||||| |||| ||||||||||||| |||||  |||||
seq2  GTAGGCTT----AGAGTA-TACA-GAGGAAAATGTGT-CTAGC--TGGGG  41

seq1  AGGGTTAGAATTGCCCAGTCTTTGAGCTAGCCAAGGCATTTTAAAGTAAC  100
      |||  ||||| |||||||||  |||||||||||| |||  ||||||| ||
seq2  AGG--TAGAA-TGCCCAGTC--TGAGCTAGCCAA-GCA--TTAAAGT-AC  82

seq1  TGGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTCT  150
      ||||   |||| ||  |||||||  |||| ||||| ||  || ||| |  
seq2  TGGT---TGTG-GTAGGTGTGTG-ATGTG-GTGTG-GTAGGTATGTTTTC  125

seq1  TTCATTCAC-AGATCCTAATTGCTCCTGAGCAGATAGATGTG-CATGTGC  198
      |||| |||| | ||||||| ||||||||| |||||||||||| |||||||
seq2  TTCA-TCACAAAATCCTAA-TGCTCCTGAACAGATAGATGTGCCATGTGC  173

seq1  AACC-TTCCATGAGCCAAAGAGGACTAGCCAATCCTGCTACAGGATGGCA  247
      |||| |||||||||||||||| ||||||||||| ||||||||||||||||
seq2  AACCTTTCCATGAGCCAAAGAAGACTAGCCAAT-CTGCTACAGGATGGCA  222

seq1  TGCAAC-ATGGTGGGGGAGAACTCATTTTAAAAATTATTTAGAGATTCTT  296
      |||||| ||| ||||||||||||||||||||||||||||||||||||| |
seq2  TGCAACAATGTTGGGGGAGAACTCATTTTAAAAATTATTTAGAGATTC-T  271

seq1  GGATGGAACACACACACACACATAATTGATGTGTAAGTCTAGGAGGAGAG  346
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGATGGAACACACACACACACATAATTGATGTGTAAGTCTAGGAGGAGAG  321

seq1  GAGAAATAGTTTCTCAGCTACAGAGGAGAGTCACGTGGTTCCTGAGCAAG  396
      ||||||||||||||||||||||||||||||||||||||||| ||||||||
seq2  GAGAAATAGTTTCTCAGCTACAGAGGAGAGTCACGTGGTTCGTGAGCAAG  371

seq1  CCAGGAAATTAGAACAAAAGAACAGAGCCATCAGAGAGAGCCTCAGGTCA  446
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAGGAAATTAGAACAAAAGAACAGAGCCATCAGAGAGAGCCTCAGGTCA  421

seq1  GAAACAGTGGGAGCCTCTGCTGTGAAAAGTGGCTGTCTGGTTCCCTGAAC  496
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAACAGTGGGAGCCTCTGCTGTGAAAAGTGGCTGTCTGGTTCCCTGAAC  471

seq1  AGGTGCTAGGAGGAAGGCAATGAGAGGCAGACAATAAAAGCTGCCTGCCC  546
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGTGCTAGGAGGAAGGCAATGAGAGGCAGACAATAAAAGCTGCCTGCCC  521

seq1  CCAGCCAACAGATAAATAAAGGATAGAGATTTATGAAATTGATTTAATTC  596
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAGCCAACAGATAAATAAAGGATAGAGATTTATGAAATTGATTTAATTC  571

seq1  CTTTTAAGGATAGAAGAGAGTATATTAGTAATGGTTTATATGTTCTCAAG  646
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTTAAGGATAGAAGAGAGTATATTAGTAATGGTTTATATGTTCTCAAG  621

seq1  TATACAGAGATATTAAGCTCCACAGAAGGAAGAAGTAGGGGAGATTGACT  696
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATACAGAGATATTAAGCTCCACAGAAGGAAGAAGTAGGGGAGATTGACT  671

seq1  GAAAAAAAAATGCTTTAGAGATATTTATGTCTTACCAGGGCAAACTCTCA  746
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAAAAAAAATGCTTTAGAGATATTTATGTCTTACCAGGGCAAACTCTCA  721

seq1  AAATCTTTGAACATGCTTCACCTGGGATTTCTGGGACTGTTTAGCCTGTT  796
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATCTTTGAACATGCTTCACCTGGGATTTCTGGGACTGTTTAGCCTGTT  771

seq1  ATGACAAAAATAGAGCCTGGAAATAGCCTTATACAGTAAGTAGATATAGA  846
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGACAAAAATAGAGCCTGGAAATAGCCTTATACAGTAAGTAGATATAGA  821

seq1  TAATGAATATTGAGGCTTTTGATTCTTAAATTTTTGATTGAAAAGCAGGG  896
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAATGAATATTGAGGCTTTTGATTCTTAAATTTTTGATTGAAAAGCAGGG  871

seq1  AAAGGAAGCCTTGCCTATTTCAGACAGTAGAAATTTAGGCCTTGAAAATT  946
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGGAAGCCTTGCCTATTTCAGACAGTAGAAATTTAGGCCTTGAAAATT  921

seq1  ATATAAAGAGAAAGAAGCAAACTACAATATGTACCAACAGAGATATTAAT  996
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATAAAGAGAAAGAAGCAAACTACAATATGTACCAACAGAGATATTAAT  971

seq1  CTCCATAGTAGGAAGGATTTAAGTATACATAGATGTATAAAATATTGAGG  1046
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCCATAGTAGGAAGGATTTAAGTATACATAGATGTATAAAATATTGAGG  1021

seq1  CATTTGATCTTTAATTATAGGTTGAAAAGCAGGAGGAGGTAAAGAAGCAC  1096
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATTTGATCTTTAATTATAGGTTGAAAAGCAGGAGGAGGTAAAGAAGCAC  1071

seq1  TTTCTTGGTGGTTAATATTTGTTTAGATTACTTTAACTACTTTGAATTGC  1146
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCTTGGTGGTTAATATTTGTTTAGATTACTTTAACTACTTTGAATTGC  1121

seq1  TTTAATTATCAAAATGTGGGTTATTTGCTTGGTGGTTATATTAAAATTCC  1196
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTAATTATCAAAATGTGGGTTATTTGCTTGGTGGTTATATTAAAATTCC  1171

seq1  TCTAGGAATTC  1207
      |||||||||||
seq2  TCTAGGAATTC  1182

seq1: chr6_90037620_90038555
seq2: B6Ng01-081O11.g_71_1007

seq1  GAATTCATTGTGGTTTGTATCTGAGGAGGGATCATACTCACCAGAGTGTT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCATTGTGGTTTGTATCTGAGGAGGGATCATACTCACCAGAGTGTT  50

seq1  TTTCTACAGAAATTATGCATCTGTCTAGAATGTGCATGCTTTACTTATTC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCTACAGAAATTATGCATCTGTCTAGAATGTGCATGCTTTACTTATTC  100

seq1  TTTTTGTTGTTTGATTTTTCACAACAGGGTTTCTCTGTGTACCTCTGGAT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTTGTTGTTTGATTTTTCACAACAGGGTTTCTCTGTGTACCTCTGGAT  150

seq1  GTCCTGGAACATACTCTGTAGACCAGTTTGGCCATGAAATTGAAAAATTG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCCTGGAACATACTCTGTAGACCAGTTTGGCCATGAAATTGAAAAATTG  200

seq1  AACATCCACAAACCTCCTCTGCCTTTGAAATGGTGGAATTAATGTGTCTG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACATCCACAAACCTCCTCTGCCTTTGAAATGGTGGAATTAATGTGTCTG  250

seq1  TCACCATTGCTTGGCACTGATACTTTTGATATACAGAATTGTATGATTGT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCACCATTGCTTGGCACTGATACTTTTGATATACAGAATTGTATGATTGT  300

seq1  TAAATTTGTAGATAGCAGCATGACTAGAGAAATGGCAGCTGTGTCTTTCC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAATTTGTAGATAGCAGCATGACTAGAGAAATGGCAGCTGTGTCTTTCC  350

seq1  AGGTAAGCTGGTGTATATGATGGCAGGAAATCACATCACTGTAAGTTTTC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGTAAGCTGGTGTATATGATGGCAGGAAATCACATCACTGTAAGTTTTC  400

seq1  TCTTTGCTCCTGTGGAATTCCACCTCCAGAAAGATAAGGTTTCCCAGTGC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTTGCTCCTGTGGAATTCCACCTCCAGAAAGATAAGGTTTCCCAGTGC  450

seq1  TTTCAAAGCCAGAATCCCTGAAGCCATGGTGTTGACAATATTGCTGAGGA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCAAAGCCAGAATCCCTGAAGCCATGGTGTTGACAATATTGCTGAGGA  500

seq1  ATCACAATCTCTGTGCCTGCCTGACTTTCCTAAGAGCTTCAGTTTTGTAG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCACAATCTCTGTGCCTGCCTGACTTTCCTAAGAGCTTCAGTTTTGTAG  550

seq1  GCCTGAGGTTTCTGAAGTGACCCTGACACTAGCACAGCCTGCACCTGCTC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCTGAGGTTTCTGAAGTGACCCTGACACTAGCACAGCCTGCACCTGCTC  600

seq1  TGCAGAGCTGACAGGACAATCTATGTTTGTTCATAAAGATCTAGTTTCTT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCAGAGCTGACAGGACAATCTATGTTTGTTCATAAAGATCTAGTTTCTT  650

seq1  TTCCTTTTTTTTCCTTTTCTCTTCTTTTCTTTCCTTTTCATTCATCTCTT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCCTTTTTTTTCCTTTTCTCTTCTTTTCTTTCCTTTTCATTCATCTCTT  700

seq1  TTTTTCCCACTTTCTTG-TTTCCTTTCCTCTTTTATTTACTCTTCTATTT  749
      ||||||||||||||||| ||||||||||||||||||||||||||||||||
seq2  TTTTTCCCACTTTCTTGTTTTCCTTTCCTCTTTTATTTACTCTTCTATTT  750

seq1  TATTTTCTATTCTGATTAGCTCAGTGTAGTTATACAAAAAAGTACATCTC  799
      ||||||||||||||||||||||||||||| ||||||||||||||||||||
seq2  TATTTTCTATTCTGATTAGCTCAGTGTAG-TATACAAAAAAGTACATCTC  799

seq1  CAGATACA-TTAGAGAAATCATTTTAGAATTCTTGTACCTCTTAGTCAGC  848
      |||||||| ||||||||||||||||||| |  ||||||||||   |||||
seq2  CAGATACATTTAGAGAAATCATTTTAGATTCTTTGTACCTCTAGTTCAGC  849

seq1  TAGTACCAATGTGCACATGATGCCAGCTAGTACTTTAAACTCTACAGGTG  898
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGTACCAATGTGCACATGATGCCAGCTAGTACTTTAAACTCTACAGGTG  899

seq1  TTTTCTTACCAGGAAATGAAGTGCATAAAACACTCAGT  936
      ||||||||||||| |||| ||||||||| |||||||||
seq2  TTTTCTTACCAGGGAATGGAGTGCATAATACACTCAGT  937