BAC Information

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BAC

Clone NameB6Ng01-082D20
Chromosome11 (Build37)6 (Build37)
Map Location 43,483,369 - 43,483,477121,511,283 - 121,511,529
singlet/doubletsingletsinglet
Overlap geneLOC620562
Upstream geneAtp10b, EG544767, Pttg1, Slu7, LOC100039392, C1qtnf2, Ccnjl, Fabp6
Downstream gene4631424J17Rik, Ttc1, Adra1b, Il12b, Ublcp1, 3732413I11Rik, Ebf1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-082D20.bB6Ng01-082D20.g
ACCDH896853DH896854
length162247
definitionDH896853|Mus musculus domesticus DNA, BAC clone: B6Ng01-082D20, 5' end.DH896854|Mus musculus domesticus DNA, BAC clone: B6Ng01-082D20, 3' end.
singlet/doubletsingletsinglet
BLAST hituniqueunique
Map location.(43,483,369 - 43,483,477)(121,511,283 - 121,511,529)
sequence
cagggccaaaaagggggagtgggtgggcaggggagtgggggtgggtggat
acgtcagacacaccagtagagggcgtcagatctcattatggatggttgtg
agccaccatgtggttgctgggatttgaactcagggcctctggaagagcag
tcagtgctctta
ttcacgccactaaggacgaggatttcaagttgagttagaattcattaaag
aaaaaaaagagaaccaattttaatacagatgtaaacttgagcgttaaggg
ggagagaaagatgcttagaaagagagtggtatacactcaaaatataggca
tataggcattggctcttcaagagagaactgcttacatgtcttaacactag
acaggtgtgtgtgtggtatatatgtgtctgtggtgtgtgtgtgtgtg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr11_43483369_43483477
seq2: B6Ng01-082D20.b_101_209 (reverse)

seq1  TAAGAGCACTGACTGCTCTTCCGAAGGTCCTGAGTTCAAATCCCAGCAAC  50
      ||||||||||||||||||||||  ||| ||||||||||||||||||||||
seq2  TAAGAGCACTGACTGCTCTTCCAGAGGCCCTGAGTTCAAATCCCAGCAAC  50

seq1  CACATGGTGGCTCAAAACCATCCGTAATGAGATCTGACGCCCTCTTCTGG  100
      |||||||||||||| |||||||| ||||||||||||||||||||| ||||
seq2  CACATGGTGGCTCACAACCATCCATAATGAGATCTGACGCCCTCTACTGG  100

seq1  AGCGTCTGA  109
       | ||||||
seq2  TGTGTCTGA  109

seq1: chr6_121511283_121511529
seq2: B6Ng01-082D20.g_74_320

seq1  TTCACGCCACTAAGGACGAGGATTTCAAGTTGAGTTAGAATTCATTAAAG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCACGCCACTAAGGACGAGGATTTCAAGTTGAGTTAGAATTCATTAAAG  50

seq1  AAAAAAAAGAGAACCAATTTTAATACAGATGTAAACTTGAGCGTTAAGGG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAAAAAGAGAACCAATTTTAATACAGATGTAAACTTGAGCGTTAAGGG  100

seq1  GGAGAGAAAGATGCTTAGAAAGAGAGTGGTATACACTCAAAATATAGGCA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAGAGAAAGATGCTTAGAAAGAGAGTGGTATACACTCAAAATATAGGCA  150

seq1  TATAGGCATTGGCTCTTCAAGAGAGAACTGCTTACATGTCTTAACACTAG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATAGGCATTGGCTCTTCAAGAGAGAACTGCTTACATGTCTTAACACTAG  200

seq1  ACAGGTGTGTGTGTGGTATATATGTGTCTGTGGTGTGTGTGTGTGTG  247
      |||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAGGTGTGTGTGTGGTATATATGTGTCTGTGGTGTGTGTGTGTGTG  247