BAC Information

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BAC

Clone NameB6Ng01-082F22
Chromosome6 (Build37)
Map Location 108,480,082 - 108,651,181
singlet/doubletdoublet
Overlap geneItpr1, LOC677205, Bhlhb2
Upstream geneLrrn1, Setmar, Sumf1, LOC100043718
Downstream geneArl8b, Edem1, EG627371, LOC639110, LOC100043720
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-082F22.bB6Ng01-082F22.g
ACCDH896942DH896943
length523930
definitionDH896942|Mus musculus domesticus DNA, BAC clone: B6Ng01-082F22, 5' end.DH896943|Mus musculus domesticus DNA, BAC clone: B6Ng01-082F22, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(108,480,082 - 108,480,609)(108,650,252 - 108,651,181)
sequence
actatgaattttctgcccaggaggatgtaaatactacataagtggggaca
ttagaggtaagagacaaaatatatgattcccagaaagatacagttgccct
tttttctgctgtattcaagggagaagactgaattcttgaatgttagaagc
acaaaaaaaaaaaaaaaaaaaaaaaaaaaaaacattaaaaggaaaggtgt
tttgtttaaaaaatgaatgatgaatttcttttcctaactaaacacagatt
cacttatgtatcttgaaattccacctcataatcttagatacccccccccc
agaagtgtttctgagtgaacttcatagacagtagggtgactggatagaat
atcctgggctattctgagtgcctctcctccatggtagcatgtgatagaca
ggttatttctatcctgccgatgaaatgagccatttcaaaccaaattagat
catgtacgcagggttatggggaagctgctctcaggtgagttcaccggccc
caagagggggagggggagggagg
gaattcactcatgcaagttagcagcagcccaccagccaaaggctctgaaa
cattgtgaggcagctgggacctgggaagccagctggggcaaaacagtata
cacacacacacacacacacacacacacacaccacaccacaccacaccaca
ccacaccacaccacaccacaccacaccacacgcaaacacacacttgggta
gtggtgactgatggctcccaccactgcacattaatcagtaagtctatcag
cgggctgtcaggcatccgggagcccagatcgttattgtcaccgaaggctt
gccagttctttcatctgggtctgggatcgcccacggggcttgcagccatc
ctgcctcgctttgcagcgactttatcccactctctgtgggggctgcacag
ccaggacctcgccccacccccacccccgtgtgatccgctgcgctgtccca
gatgctaccgctgagaatgaggattgaagcttctcggtggtgggaaggga
gggtgaagccaaaagaaaaactcaggcctaccctgactgtgcaagggatc
gctaggggtggattgatttctcctatgtagagcttctacagtctccagct
gaagttcttggaggccactgttccgccctctcttcccctctgcctctgcc
tggtgggcgccctgtctctgtgtaagtgcagagacctagttttgtatgag
caagagtggatgagggaaacccttctgagcctcagtttcctcttctacag
aagagaggagggcgggggaggagaagggagtctagaggaaatcttttagg
ctgcaaaagctttcttctagatttaaaagatgaagcaaagcacctagtac
ggccctggtctgtagactctgcatttgcacacaccttgagcacgttgagt
cctcctctctctctctctctctctctctct
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr6_108480082_108480609
seq2: B6Ng01-082F22.b_47_575

seq1  GAATTCACTATGAATTTTCTGCCCAGGAGGATGTAAATACTACATAAGTG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCACTATGAATTTTCTGCCCAGGAGGATGTAAATACTACATAAGTG  50

seq1  GGGACATTAGAGGTAAGAGACAAAATATATGATTCCCAGAAAGATACAGT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGACATTAGAGGTAAGAGACAAAATATATGATTCCCAGAAAGATACAGT  100

seq1  TGCCCTTTTTTCTGCTGTATTCAAGGGAGAAGACTGAATTCTTGAATGTT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCCCTTTTTTCTGCTGTATTCAAGGGAGAAGACTGAATTCTTGAATGTT  150

seq1  AGAAGCAC-AAAAAAAAAAAAAAAAAAAAAAAAAAAAACATTAAAAGGAA  199
      |||||||| |||||||||||||||||||||||||||||||||||||||||
seq2  AGAAGCACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAACATTAAAAGGAA  200

seq1  AGGTGTTTTGTTTAAAAAATGAATGATGAATTTCTTTTCCTAACTAAACA  249
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGTGTTTTGTTTAAAAAATGAATGATGAATTTCTTTTCCTAACTAAACA  250

seq1  CAGATTCACTTATGTATCTTGAAATTCCACCTCATAATCTTAGATACCCC  299
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGATTCACTTATGTATCTTGAAATTCCACCTCATAATCTTAGATACCCC  300

seq1  CCCCCCAGAAGTGTTTCTGAGTGAACTTCATAGACAGTAGGGTGACTGGA  349
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCCCCAGAAGTGTTTCTGAGTGAACTTCATAGACAGTAGGGTGACTGGA  350

seq1  TAGAATATCCTGGGCTATTCTGAGTGCCTCTCCTCCATGGTAGCATGTGA  399
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGAATATCCTGGGCTATTCTGAGTGCCTCTCCTCCATGGTAGCATGTGA  400

seq1  TAGACAGGTTATTTCTATCCTGCCGATGAAATGAGCCATTTCAAACCAGA  449
      |||||||||||||||||||||||||||||||||||||||||||||||| |
seq2  TAGACAGGTTATTTCTATCCTGCCGATGAAATGAGCCATTTCAAACCAAA  450

seq1  TTAGATCATGTACGCAGGGTTATGGGGAAGCTGCTCTCAGGTGAGTTCAC  499
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAGATCATGTACGCAGGGTTATGGGGAAGCTGCTCTCAGGTGAGTTCAC  500

seq1  CGGCCCCAAGAGGGGGAGGGGGAGGGAGG  528
      |||||||||||||||||||||||||||||
seq2  CGGCCCCAAGAGGGGGAGGGGGAGGGAGG  529

seq1: chr6_108650252_108651181
seq2: B6Ng01-082F22.g_69_998 (reverse)

seq1  AGAGAGAGAGAGAGAGAGAGAGAGAGGAGAGCTC-ACGTGCTC-AGGTGT  48
      |||||||||||||||||||||||||||||  ||| |||||||| ||||||
seq2  AGAGAGAGAGAGAGAGAGAGAGAGAGGAGGACTCAACGTGCTCAAGGTGT  50

seq1  GTGCAAATGCAGAGTCATACAGACCAGGGCCGTACTAGGTGGCTTTGCTT  98
      |||||||||||||||| ||||||||||||||||||||||| |||||||||
seq2  GTGCAAATGCAGAGTC-TACAGACCAGGGCCGTACTAGGT-GCTTTGCTT  98

seq1  CATC-TTTAAATCTAGAAGAAAGCTTTTGCAGCCTAAAAGATTTCCTCTA  147
      |||| |||||||||||||||||||||||||||||||||||||||||||||
seq2  CATCTTTTAAATCTAGAAGAAAGCTTTTGCAGCCTAAAAGATTTCCTCTA  148

seq1  GACTCCCCTTCTCCTCCCCCGCCCTCCTCTCTTCTGTAGAAGAGGAAACT  197
      |||| |||||||||||||||||||||||||||||||||||||||||||||
seq2  GACT-CCCTTCTCCTCCCCCGCCCTCCTCTCTTCTGTAGAAGAGGAAACT  197

seq1  GAGGCTCAGAAGGGTTTCCCTCATCCACTCTTGCTCATACAAAACTAGGT  247
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGGCTCAGAAGGGTTTCCCTCATCCACTCTTGCTCATACAAAACTAGGT  247

seq1  CTCTGCACTTACACAGAGACAGGGCGCCCACCAGGCAGAGGCAGAGGGGA  297
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTGCACTTACACAGAGACAGGGCGCCCACCAGGCAGAGGCAGAGGGGA  297

seq1  AGAGAGGGCGGAACAGTGGCCTCCAAGAACTTCAGCTGGAGACTGTAGAA  347
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGAGGGCGGAACAGTGGCCTCCAAGAACTTCAGCTGGAGACTGTAGAA  347

seq1  GCTCTACATAGGAGAAATCAATCCACCCCTAGCGATCCCTTGCACAGTCA  397
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTCTACATAGGAGAAATCAATCCACCCCTAGCGATCCCTTGCACAGTCA  397

seq1  GGGTAGGCCTGAGTTTTTCTTTTGGCTTCACCCTCCCTTCCCACCACCGA  447
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGTAGGCCTGAGTTTTTCTTTTGGCTTCACCCTCCCTTCCCACCACCGA  447

seq1  GAAGCTTCAATCCTCATTCTCAGCGGTAGCATCTGGGACAGCGCAGCGGA  497
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAGCTTCAATCCTCATTCTCAGCGGTAGCATCTGGGACAGCGCAGCGGA  497

seq1  TCACACGGGGGTGGGGGTGGGGCGAGGTCCTGGCTGTGCAGCCCCCACAG  547
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCACACGGGGGTGGGGGTGGGGCGAGGTCCTGGCTGTGCAGCCCCCACAG  547

seq1  AGAGTGGGATAAAGTCGCTGCAAAGCGAGGCAGGATGGCTGCAAGCCCCG  597
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGTGGGATAAAGTCGCTGCAAAGCGAGGCAGGATGGCTGCAAGCCCCG  597

seq1  TGGGCGATCCCAGACCCAGATGAAAGAACTGGCAAGCCTTCGGTGACAAT  647
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGGCGATCCCAGACCCAGATGAAAGAACTGGCAAGCCTTCGGTGACAAT  647

seq1  AACGATCTGGGCTCCCGGATGCCTGACAGCCCGCTGATAGACTTACTGAT  697
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACGATCTGGGCTCCCGGATGCCTGACAGCCCGCTGATAGACTTACTGAT  697

seq1  TAATGTGCAGTGGTGGGAGCCATCAGTCACCACTACCCAAGTGTGTGTTT  747
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAATGTGCAGTGGTGGGAGCCATCAGTCACCACTACCCAAGTGTGTGTTT  747

seq1  GCGTGTGGTGTGGTGTGGTGTGGTGTGGTGTGGTGTGGTGTGGTGTGGTG  797
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCGTGTGGTGTGGTGTGGTGTGGTGTGGTGTGGTGTGGTGTGGTGTGGTG  797

seq1  TGGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTATACTGTTTTGCCCCA  847
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTATACTGTTTTGCCCCA  847

seq1  GCTGGCTTCCCAGGTCCCAGCTGCCTCACAATGTTTCAGAGCCTTTGGCT  897
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTGGCTTCCCAGGTCCCAGCTGCCTCACAATGTTTCAGAGCCTTTGGCT  897

seq1  GGTGGGCTGCTGCTAACTTGCATGAGTGAATTC  930
      |||||||||||||||||||||||||||||||||
seq2  GGTGGGCTGCTGCTAACTTGCATGAGTGAATTC  930