BAC Information

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BAC

Clone NameB6Ng01-082G02
Chromosome6 (Build37)
Map Location 123,921,972 - 123,923,133
singlet/doubletsinglet
Overlap geneLOC623282
Upstream geneClec4a4, Clec4b1, Clec4a2, Clec4b2, Ppia-ps6_1344.1, Clec4n, Clec4d, Clec4e, EG232358, EG667180, LOC626436, EG546912, LOC100043511, Vmn2r-ps32, EG546913, LOC100043516, EG435916, EG243628, EG545874, LOC384484
Downstream geneV2r1b, EG384486, Vmn2r-ps34, Vmn2r27, LOC623374, EG622297, Cd163, LOC100043530, 1700013D24Rik, 1700027F06Rik, 1700060L04Rik, Pex5, Clstn3, C1rl, C1r, C1s, LOC667277, EG317677, Mboat5, Emg1, Phb2, Ptpn6, Grcc10, Atn1, Eno2, Lrrc23, Spsb2, Tpi1, Usp5, Cdca3, Gnb3, Leprel2, Gpr162, Cd4, Lag3, Ptms, Mlf2, EG667343, Cops7a
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-082G02.bB6Ng01-082G02.g
ACCDH896950DH896951
length1,0531,152
definitionDH896950|Mus musculus domesticus DNA, BAC clone: B6Ng01-082G02, 5' end.DH896951|Mus musculus domesticus DNA, BAC clone: B6Ng01-082G02, 3' end.
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
gaattctttgtttagctctgtaccccatttttaatgggattatttgaatt
tctggagtccagcttctgagctctttgtatatattgaatattagtcccat
atcagatttaggattggtaaaaatacttttgcaatctgttggtggcctat
ttgtcttgttgacagtgtcctttgcttacagaagctttgcaattttatga
ggtcccaattgtcgattctcgatcttacagcactagccattgttgttctg
tttaggaatttttcccctgtgcccaaatctttgagacttttcccactttc
tcctctacaagtttcagtgtctctggttttatgtggagttctttgatcca
cttagacttgagctttgtacaagaagataagaatggatcaattcgaattc
ttctacaatatgactgcccattgtaccagcaccatttgttgaaaatgctg
tccgtccccccccccaccccactggatggctttagctcccttgtcaaaga
tcaagtgaccacaagtgtgtgggtccatttctgggtcttcaattctattc
tatggatctacctttctgtctctgtaccagtaccatgcactttttatcac
aattgctctgtagtacagcttgaggtcaggcaatgtgattccaccagagg
ttcttttattgttgagaatactttttgctattctagtttttttgttattc
cagatgaatttgcaaattttcctttctaactcagtgaagaattgagttgg
aattttgatggggattgcattgaatctgtagattgctttcagcagggtag
ccactttgactatattaatcctaccaatccatgagcatggggagatcttt
cattattctgagatcttcttcgatttctttcttcagagaacttgaaggtc
tggtcataacagatcatcactttctttagttaggtcagaccaaggtatta
atattatttttgactatttgtgaagggtgtgtttccctaatttctttccc
atctgttataccttgtgaaggagatccactgaaatgtgtgagaaaattaa
atc
gaattctcagcattcccataacaagtcagacatggctgtgcgtgcctgta
acctgacatagcagggtagagacagataaatcactgatagaattctcagc
attcccataacaagtcagacatggctgtgtgtgcctgtaacctgacatag
cagggtagaggcagataaatcactggagcctgctcagtcagctggcgatc
acaagtttccagttcagtgaaagaccctggttcaaggcagcactgtagaa
agtgatgaagaaagaatgtctggcctctaggtgttctgacatgcctactt
gtacagtcctaacacacaccacacttgcaacacataccacacaaacacac
acatacacatgtacacacatatgcacacatacaaacatggtcaaacataa
gcatactctcatgtacacacaaagacacacacacatgcgtgcacacacat
tgaaagagtgagagagagaagagagactcagagagaaagagactcagaga
gagactcagagagaaagaacaaactactgtggcacacccatgaggtcata
attcctcagtactacaaatcaaagagaataagacaaatggcatgagaaca
aatgtcagagttgctctgttgtgtagagtgacgactaattattaataatc
acagagctcacatacacaggcagatgcaataagaatcaattctgaatcta
aataaaacttggcaaacaggcatttgttggagaaattttaaaatgtggag
gaataaaatctgaaaaaaaaaaaaaagataaccaaagaaacttggctgaa
aattaaatccaagttagtcagaagaaaaaaccaccactgaacagcctttt
gtaaattttcttcacctcaaggatgttctctgaaaagtatgacagtgaat
catgaaaagaaaaatgcgtgactttgaaagcataggactttacacagaga
actggttgaagacagacatctagtactcaagctggcaaagagaagaagtt
tccatatgtaaatggatgatttaatcgttgggtatttactattctacaca
gaaaaacctcaacaaactgccaacatgtagagaaagcacatgtattaacc
tatgatctccagtacgagatgcctgcacaaagtcatgcttaaggtgtgtg
gt
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr6_123921972_123923133
seq2: B6Ng01-082G02.g_70_1221

seq1  GAATTCTCAGCATTCCCATAACAAGTCAGACATGGCTGTGCGTGCCTGTA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTCAGCATTCCCATAACAAGTCAGACATGGCTGTGCGTGCCTGTA  50

seq1  ACCTGACATAGCAGGGTAGAGACAGATAAATCACTGATAGAATTCTCAGC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCTGACATAGCAGGGTAGAGACAGATAAATCACTGATAGAATTCTCAGC  100

seq1  ATTCCCATAACAAGTCAGACATGGCTGTGTGTGCCTGTAACCTGACATAG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTCCCATAACAAGTCAGACATGGCTGTGTGTGCCTGTAACCTGACATAG  150

seq1  CAGGGTAGAGGCAGATAAATCACTGGAGCCTGCTCAGTCAGCTGGCGATC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGGGTAGAGGCAGATAAATCACTGGAGCCTGCTCAGTCAGCTGGCGATC  200

seq1  ACAAGTTTCCAGTTCAGTGAAAGACCCTGGTTCAAGGCAGCACTGTAGAA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAAGTTTCCAGTTCAGTGAAAGACCCTGGTTCAAGGCAGCACTGTAGAA  250

seq1  AGTGATGAAGAAAGAATGTCTGGCCTCTAGGTGTTCTGACATGCCTACTT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTGATGAAGAAAGAATGTCTGGCCTCTAGGTGTTCTGACATGCCTACTT  300

seq1  GTACAGTCCTAACACACACCACACTTGCAACACATACCACACAAACACAC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTACAGTCCTAACACACACCACACTTGCAACACATACCACACAAACACAC  350

seq1  ACATACACATGTACACACATATGCACACATACAAACATGGTCAAACATAA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACATACACATGTACACACATATGCACACATACAAACATGGTCAAACATAA  400

seq1  GCATACTCTCATGTACACACAAAGACACACACACATGCGTGCACACACAT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCATACTCTCATGTACACACAAAGACACACACACATGCGTGCACACACAT  450

seq1  TGAAAGAGTGAGAGAGAGAAGAGAGACTCAGAGAGAAAGAGACTCAGAGA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAAAGAGTGAGAGAGAGAAGAGAGACTCAGAGAGAAAGAGACTCAGAGA  500

seq1  GAGACTCAGAGAGAAAGAACAAACTACTGTGGCACACCCATGAGGTCATA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGACTCAGAGAGAAAGAACAAACTACTGTGGCACACCCATGAGGTCATA  550

seq1  ATTCCTCAGTACTACAAATCAAAGAGAATAAGACAAATGGCATGAGAACA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTCCTCAGTACTACAAATCAAAGAGAATAAGACAAATGGCATGAGAACA  600

seq1  AATGTCAGAGTTGCTCTGTTGTGTAGAGTGACGACTAATTATTAATAATC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATGTCAGAGTTGCTCTGTTGTGTAGAGTGACGACTAATTATTAATAATC  650

seq1  ACAGAGCTCACATACACAGGCAGATGCAATAAGAATCAATTCTGAATCTA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAGAGCTCACATACACAGGCAGATGCAATAAGAATCAATTCTGAATCTA  700

seq1  AATAAAACTTGGCAAACAGGCATTTGTTGGAGAAATTTTAAAATGTGGAG  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATAAAACTTGGCAAACAGGCATTTGTTGGAGAAATTTTAAAATGTGGAG  750

seq1  GAATAAAATCTGAAAAAAAAAAAAAAGATAACCAAAGAAACTT-GCTGAA  799
      ||||||||||||||||||||||||||||||||||||||||||| ||||||
seq2  GAATAAAATCTGAAAAAAAAAAAAAAGATAACCAAAGAAACTTGGCTGAA  800

seq1  AATTAAATCCAAGTTAGTCAGAAG-AAAAACCACCACTGAACAGCC-TTT  847
      |||||||||||||||||||||||| ||||||||||||||||||||| |||
seq2  AATTAAATCCAAGTTAGTCAGAAGAAAAAACCACCACTGAACAGCCTTTT  850

seq1  GTAAATTTTCTTCACCTCAAGGATGTTCTCTGAAAAGTATGACAGTGAAT  897
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTAAATTTTCTTCACCTCAAGGATGTTCTCTGAAAAGTATGACAGTGAAT  900

seq1  CATG-AAAGAAAAATGCGTGACTTTGAAAGCATAGGACTTAACACAGAGA  946
      |||| ||||||||||||||||||||||||||||||||||| |||||||||
seq2  CATGAAAAGAAAAATGCGTGACTTTGAAAGCATAGGACTTTACACAGAGA  950

seq1  ACTGGTTG-AGACAGACATCTAGTACTCAAGCTGGCAAAGAGAAGAAGTG  995
      |||||||| |||||||||||||||||||||||||||||||||||||||| 
seq2  ACTGGTTGAAGACAGACATCTAGTACTCAAGCTGGCAAAGAGAAGAAGTT  1000

seq1  T-CATATGTAAAATTGGAATGATTTACATACGTTGGGTATTTTACTTATT  1044
      | ||||||||||  ||| |||||||| || ||||||||| ||||| ||||
seq2  TCCATATGTAAA--TGG-ATGATTTA-AT-CGTTGGGTA-TTTAC-TATT  1043

seq1  CTACACAGAAAAACTCAAACAAAACTGCCAACATGTTAGAGAAAAGCAAA  1094
      ||||||||||||||   ||| |||||||||||||| ||||| |||||  |
seq2  CTACACAGAAAAACCTCAAC-AAACTGCCAACATG-TAGAG-AAAGC--A  1088

seq1  CATGTA-TAAACTATGATCTCCAGTACAGAGATGCCTGCACCACAGTTCA  1143
      |||||| ||| |||||||||||||||| |||||||||||| || || |||
seq2  CATGTATTAACCTATGATCTCCAGTAC-GAGATGCCTGCA-CAAAG-TCA  1135

seq1  TGCTTAAGAAGTGTGTGGT  1162
      ||||||||  |||||||||
seq2  TGCTTAAG--GTGTGTGGT  1152