BAC Information

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BAC

Clone NameB6Ng01-082I04
Chromosome6 (Build37)
Map Location 59,115,921 - 59,225,697
singlet/doubletdoublet
Overlap geneTigd2
Upstream geneLOC100041571, V1rc33, LOC626724, V1rc25, V1rc2, LOC666928, V1rc22, LOC626817, EG626828, LOC666954, Abcg2, Herc3, Nap1l5, D430015B01Rik
Downstream geneGprin3, EG634166, EG627108, EG434019, LOC671300, EG627178, LOC100041706
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-082I04.bB6Ng01-082I04.g
ACCDH897042DH897043
length1,1431,145
definitionDH897042|Mus musculus domesticus DNA, BAC clone: B6Ng01-082I04, 5' end.DH897043|Mus musculus domesticus DNA, BAC clone: B6Ng01-082I04, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(59,115,921 - 59,116,883)(59,224,527 - 59,225,697)
sequence
gaattcaaggcccatacctaaacataataaaagcaatatacagcaaacca
gtagccaacatcaaactaaatggagagaaacttgatgcaattccactaaa
accagggagtagacaaggctgcccactttctccctacctattcaatatag
tatttgaagtcctagccagaggaattagacatcaaaaggagatcaagggg
atacaaattggaaaggaagaagtcaaaaaatcactatttgcagattatat
gatagtacatataagtgatcctaaaaattccaccagagaacttctaaatc
agataaacagcttcagtgaagtagctggatataaaattaacttaaacaaa
tcagtggcatttctttacacaaaggataaacaggctgagaaaaaattagg
gaaacaacatccttcacaatagtcacgaataatataaaatactttggtgt
gactctaactaaggaagtgaaagatctgtatgataagaacttcaagtctc
ttaagaaagaaatcaaagaaggtctcagaagatggaacaatctcccatgc
tcatggattggcaggattaatataataaatgtggctatcctgcagaaagc
agtctacagattcaaggcaatctcaatcaaaattccaactcaaatcttca
ctggtaagtggatattagcccagaagcttaggatacccaagatatagttt
ttactatcaaaggctttttgttgttccagatgatgtcaaaaattcaggtg
acagcagatgctggcaaggatgtggagaaagaggaacactcttctattgt
tgatgggattgcaagctcgtacaaccactctggaaatgagtctggcagtt
cctcagaaaactggacgtagtactaccggaggatcccacaatacctctcc
tgggcatatatccaaagatgctccaactggtaagaaaggacatatgttcc
actatgttcttagcagccttatttatatagcagaagctggaaagacccag
atgcccctcaacgagatggatacagaaaatgtggtacatttacacaatga
gtactactcagctattaaaaacatgatcatgaaattcttagcaaacatcg
atctgacgaattcatctgagtgaggtacccatcaaaaaaactc
gaattcttttgtgattgggttacctcactcaggatgatgccctccaggtc
cacccatttgcctaggaatttcataaattcattctttttaatagctgagt
agtactccattgtgtagatgtaccacatttctgtatccattcctctgttg
aggggcatctaggttctttccagcttctggctattataaatagggctgct
atgaacatagtggagcatgtttctttcttactagttggaacatcttctgg
atatatgcccaggagaggtgttgcgggatcgtctggtagtaccatgtcca
attttctgaggaaccgccagactgatttccaaagtggttgtacaagcttg
caatcccaccaacaatggaggagtgttcctctttctccacatcctcacca
gcatctgctgtcacgatttctaatgtcattctaaaaagcatacatactaa
ccagaaatagaatttggcagtcaggagcttagagccaattccctgtgact
agacttgctaaagccccacagtattttctaagaggctcttatcagaaaag
atatcagcacaagctgcctttgaataaatatatgtgatttcaaaaatatt
caaatatgttctttgattaagatgcatatgatcattttacataattgtac
cttcactagagtggacactgttctaatgttgatagtttacacatcacaac
aaaccaatttgataaatacggtttcgtgatctatggttcctaaatgaact
aagtgagctgctgagtaaaaatgagctccccaaagttcaaaaatagagga
gatttaatgcaaggaatccaagccccaagccaaggtcattcaaccaaagt
tcatgttgatgacctcttcatttcgtacattacagatacaacatgcaatt
tatatcatttagtgtgtgttaagtaatatgctagcctttgtatatggtga
tgcaattttcctccctcacacagtaagtatttactaatgagaacagctca
agagacagatgttttgtcatagctgcatgcagtgagtgaagaatagaatt
ttattcttgatctggagtactgcaagttcaagtgtagaacccacgagaag
attttctatctttaaagggaatagaatcttgacatacataacagg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr6_59115921_59116883
seq2: B6Ng01-082I04.b_245_1188

seq1  GATACAAATTGGAAAGGAAGAAGTCAAAAAATCACTATTTGCAGATTATA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATACAAATTGGAAAGGAAGAAGTCAAAAAATCACTATTTGCAGATTATA  50

seq1  TGATAGTACATATAAGTGATCCTAAAAATTCCACCAGAGAACTTCTAAAT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGATAGTACATATAAGTGATCCTAAAAATTCCACCAGAGAACTTCTAAAT  100

seq1  CAGATAAACAGCTTCAGTGAAGTAGCTGGATATAAAATTAACTTAAACAA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGATAAACAGCTTCAGTGAAGTAGCTGGATATAAAATTAACTTAAACAA  150

seq1  ATCAGTGGCATTTCTTTACACAAAGGATAAACAGGCTGAGAAAAAATTAG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCAGTGGCATTTCTTTACACAAAGGATAAACAGGCTGAGAAAAAATTAG  200

seq1  GGAAACAACATCCTTCACAATAGTCACGAATAATATAAAATACTTTGGTG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAAACAACATCCTTCACAATAGTCACGAATAATATAAAATACTTTGGTG  250

seq1  TGACTCTAACTAAGGAAGTGAAAGATCTGTATGATAAGAACTTCAAGTCT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGACTCTAACTAAGGAAGTGAAAGATCTGTATGATAAGAACTTCAAGTCT  300

seq1  CTTAAGAAAGAAATCAAAGAAGGTCTCAGAAGATGGAACAATCTCCCATG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTAAGAAAGAAATCAAAGAAGGTCTCAGAAGATGGAACAATCTCCCATG  350

seq1  CTCATGGATTGGCAGGATTAATATAATAAATGTGGCTATCCTGCAGAAAG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCATGGATTGGCAGGATTAATATAATAAATGTGGCTATCCTGCAGAAAG  400

seq1  CAGTCTACAGATTCAAGGCAATCTCAATCAAAATTCCAACTCAAATCTTC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGTCTACAGATTCAAGGCAATCTCAATCAAAATTCCAACTCAAATCTTC  450

seq1  ACTGGTAAGTGGATATTAGCCCAGAAGCTTAGGATACCCAAGATATAGTT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTGGTAAGTGGATATTAGCCCAGAAGCTTAGGATACCCAAGATATAGTT  500

seq1  TTTACTATCAAAGGCTTTTTGTTGTTCCAGATGATGTCAAAAATTCAGGT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTACTATCAAAGGCTTTTTGTTGTTCCAGATGATGTCAAAAATTCAGGT  550

seq1  GACAGCAGATGCTGGCAAGGATGTGGAGAAAGAGGAACACTCTTCTATTG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACAGCAGATGCTGGCAAGGATGTGGAGAAAGAGGAACACTCTTCTATTG  600

seq1  TTGATGGGATTGCAAGCTCGTACAACCACTCTGGAAATGAGTCTGGCAGT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGATGGGATTGCAAGCTCGTACAACCACTCTGGAAATGAGTCTGGCAGT  650

seq1  TCCTCAGAAAACTGGACGTAGTACTACCGGAGGATCCCACAATACCTCTC  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCTCAGAAAACTGGACGTAGTACTACCGGAGGATCCCACAATACCTCTC  700

seq1  CTGGGCATATATCCAAAAGATGCTCCAACTGGTAAGAAA-GACATATGTT  749
      |||||||||||||| |||||||||||||||||||||||| ||||||||||
seq2  CTGGGCATATATCC-AAAGATGCTCCAACTGGTAAGAAAGGACATATGTT  749

seq1  CCACTATGTTCTTAGCAGCCTTATTTATAATAGCCAGAAGCTGGAAAGAA  799
      |||||||||||||||||||||||||||| |||| |||||||||||||| |
seq2  CCACTATGTTCTTAGCAGCCTTATTTAT-ATAG-CAGAAGCTGGAAAG-A  796

seq1  CCCAGATGCCCCTCAACCGAGGAATGGATACAGAAAATGTGGTACATTTA  849
      |||||||||||||||| ||||  |||||||||||||||||||||||||||
seq2  CCCAGATGCCCCTCAA-CGAG--ATGGATACAGAAAATGTGGTACATTTA  843

seq1  CACAATGGAGTACTACTCAGCTATTAAAAACAATGAATTCATGAAATTCT  899
      |||||| |||||||||||||||||||||||| ||||  ||||||||||||
seq2  CACAAT-GAGTACTACTCAGCTATTAAAAAC-ATGA--TCATGAAATTCT  889

seq1  TAGGCAAATACATCGATCTGGACGATATCATCCTGAGTGAGGTAACCCAA  949
      || ||||  |||||||||| |||||  |||| ||||||||||| ||||| 
seq2  TA-GCAA--ACATCGATCT-GACGAATTCAT-CTGAGTGAGGT-ACCCA-  932

seq1  TCACAAAAAAACTC  963
         |||||||||||
seq2  --TCAAAAAAACTC  944

seq1: chr6_59224527_59225697
seq2: B6Ng01-082I04.g_68_1212 (reverse)

seq1  CCTGTTATGTATGGTCAAAGCATTTCTTATTCCCTTTTAAAGATTAGCAG  50
      |||||||||||| |||||   |||   ||||||| |||||||| ||| | 
seq2  CCTGTTATGTAT-GTCAA--GATT--CTATTCCC-TTTAAAGA-TAG-AA  42

seq1  AATCCTTCTCTGGTGGGGTTCTTACACTGTGGACTTGGCAGGTACT-CAG  99
      ||| ||||||  || |||||| |||||| || |||| ||| ||||| |||
seq2  AAT-CTTCTC--GT-GGGTTC-TACACT-TGAACTT-GCA-GTACTCCAG  84

seq1  ATCCAGAATAAAATTCTAATCTTTCACTCACTGGCATTGCAGCTATGAAC  149
      ||| |||||||||||||| || |||||||||| ||| |||||||||||  
seq2  ATCAAGAATAAAATTCTATTC-TTCACTCACT-GCA-TGCAGCTATGACA  131

seq1  AAACATCTGTCTCTTTGAGCCTGTTTCCTCATTAGTAAAATACCTTACTG  199
      ||||||||||||| ||||| |||||  ||||||||| ||||| |||||||
seq2  AAACATCTGTCTC-TTGAG-CTGTT--CTCATTAGT-AAATA-CTTACTG  175

seq1  TGTTGAGGGGAGGAAAATTGCATCAACCATATACAAAGGCTAGCATATTA  249
      || ||| ||||||||||||||||| |||||||||||||||||||||||||
seq2  TG-TGA-GGGAGGAAAATTGCATC-ACCATATACAAAGGCTAGCATATTA  222

seq1  CTTAACACACACTAAATGATATAAATTGCATGTTGTATCTGTAATGTACG  299
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTAACACACACTAAATGATATAAATTGCATGTTGTATCTGTAATGTACG  272

seq1  AAATGAAGAGGTCATCAACATGAACTTTGGTTGAATGACCTTGGCTTGGG  349
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATGAAGAGGTCATCAACATGAACTTTGGTTGAATGACCTTGGCTTGGG  322

seq1  GCTTGGATTCC-TGCATTAAATCTCCTCTATTTTTGAACTTTGGGGAGCT  398
      ||||||||||| ||||||||||||||||||||||||||||||||||||||
seq2  GCTTGGATTCCTTGCATTAAATCTCCTCTATTTTTGAACTTTGGGGAGCT  372

seq1  CATTTTTACTCAGCAGCTCACTTAGTTCATTTAGGAACCATAGATCACGA  448
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATTTTTACTCAGCAGCTCACTTAGTTCATTTAGGAACCATAGATCACGA  422

seq1  AACCGTATTTATCAAATTGGTTTGTTGTGATGTGTAAACTATCAACATTA  498
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACCGTATTTATCAAATTGGTTTGTTGTGATGTGTAAACTATCAACATTA  472

seq1  GAACAGTGTCCACTCTAGTGAAGGTACAATTATGTAAAATGATCATATGC  548
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAACAGTGTCCACTCTAGTGAAGGTACAATTATGTAAAATGATCATATGC  522

seq1  ATCTTAATCAAAGAACATATTTGAATATTTTTGAAATCACATATATTTAT  598
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCTTAATCAAAGAACATATTTGAATATTTTTGAAATCACATATATTTAT  572

seq1  TCAAAGGCAGCTTGTGCTGATATCTTTTCTGATAAGAGCCTCTTAGAAAA  648
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAAAGGCAGCTTGTGCTGATATCTTTTCTGATAAGAGCCTCTTAGAAAA  622

seq1  TACTGTGGGGCTTTAGCAAGTCTAGTCACAGGGAATTGGCTCTAAGCTCC  698
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACTGTGGGGCTTTAGCAAGTCTAGTCACAGGGAATTGGCTCTAAGCTCC  672

seq1  TGACTGCCAAATTCTATTTCTGGTTAGTATGTATGCTTTTTAGAATGACA  748
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGACTGCCAAATTCTATTTCTGGTTAGTATGTATGCTTTTTAGAATGACA  722

seq1  TTAGAAATCGTGACAGCAGATGCTGGTGAGGATGTGGAGAAAGAGGAACA  798
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAGAAATCGTGACAGCAGATGCTGGTGAGGATGTGGAGAAAGAGGAACA  772

seq1  CTCCTCCATTGTTGGTGGGATTGCAAGCTTGTACAACCACTTTGGAAATC  848
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCCTCCATTGTTGGTGGGATTGCAAGCTTGTACAACCACTTTGGAAATC  822

seq1  AGTCTGGCGGTTCCTCAGAAAATTGGACATGGTACTACCAGACGATCCCG  898
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTCTGGCGGTTCCTCAGAAAATTGGACATGGTACTACCAGACGATCCCG  872

seq1  CAACACCTCTCCTGGGCATATATCCAGAAGATGTTCCAACTAGTAAGAAA  948
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAACACCTCTCCTGGGCATATATCCAGAAGATGTTCCAACTAGTAAGAAA  922

seq1  GAAACATGCTCCACTATGTTCATAGCAGCCCTATTTATAATAGCCAGAAG  998
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAACATGCTCCACTATGTTCATAGCAGCCCTATTTATAATAGCCAGAAG  972

seq1  CTGGAAAGAACCTAGATGCCCCTCAACAGAGGAATGGATACAGAAATGTG  1048
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGGAAAGAACCTAGATGCCCCTCAACAGAGGAATGGATACAGAAATGTG  1022

seq1  GTACATCTACACAATGGAGTACTACTCAGCTATTAAAAAGAATGAATTTA  1098
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTACATCTACACAATGGAGTACTACTCAGCTATTAAAAAGAATGAATTTA  1072

seq1  TGAAATTCCTAGGCAAATGGGTGGACCTGGAGGGCATCATCCTGAGTGAG  1148
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAAATTCCTAGGCAAATGGGTGGACCTGGAGGGCATCATCCTGAGTGAG  1122

seq1  GTAACCCAATCACAAAAGAATTC  1171
      |||||||||||||||||||||||
seq2  GTAACCCAATCACAAAAGAATTC  1145