BAC Information

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BAC

Clone NameB6Ng01-082J16
Chromosome5 (Build37)6 (Build37)
Map Location 102,546,140 - 102,547,34020,284,270 - 20,284,570
singlet/doubletsingletsinglet
Overlap genenone
Upstream geneLOC100041888, LOC100040902, Cycs-ps2, LOC100040920, Nkx6-1, Cds1, Wdfy3, EG666515, EG666527
Downstream geneLOC625780, Arhgap24, Mapk10
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-082J16.bB6Ng01-082J16.g
ACCDH897112DH897113
length1,183545
definitionDH897112|Mus musculus domesticus DNA, BAC clone: B6Ng01-082J16, 5' end.DH897113|Mus musculus domesticus DNA, BAC clone: B6Ng01-082J16, 3' end.
singlet/doubletsingletsinglet
BLAST hituniqueunique
Map location.(102,546,140 - 102,547,340)(20,284,270 - 20,284,570)
sequence
gaattctcctgttgtagaatgctcccctccacatcgtagcaacaatccag
agttttggtaccaggaacccaggctctgccattgctctggatgccggttc
gtctgttcctccctagcttcctccgctgtctcttaactgtcgcttggacc
agaacaacagatgctcagtgccttgcctgttcccagacattgtgcactgt
gcaacccctgtgtggatgcatccaatggagagatgctaagaattgtggga
aatagtccgaaagtgtaaacgatatttaaaatatgatgtgaggtcatgca
agagagggccttcatggactgtatcacagacattcaccaatcttagcatc
aagtaattattgttacctgtggggattttttttctcagacatccagatga
taatcagtgtaactatcaaagatcctctgtgtttctaagtatattcattt
tgatgcgacagtttctccacctaatcgtaatacagagtttaagtggactg
tgagtatacaagtttatcatctcttgaatttcttttgaataggccttggt
aaactgttacagatacgaaatttgatgtgcatattaatagacgcaagaag
cccagtcactttacaaagttaagcattcacaatttatcttcctacagaaa
ggaatttcattatctctcacttaaggcgatttacatatattatttttaat
ccggaaggaatctgaggaggaatagtcactacaaccacacagatctcagc
ctttatgaatgtcaatatgtaaaagagcaacttgatagggctcgaaaaca
aaatcagagcttcactttgcttcacgattgatttttaaaaactcctgtac
tgaggtgtaagtcagaggaaatgaaataagttccttttcacgcttggata
cttttgacaaatatatcaacccaaataaccatcaaacataataaaatgta
tagcatttccatgacctccaaagtccttcatgccctttatgtcatccact
gctctccagccctacaaatattttataattttcagttcttggaggcatac
tttacgtataggatagggtccatttttagtgtgtgcaggtgtgctccgct
ctatgattctcggagtgtaaatgctccgatgcttcccactttgacttgca
gcgcatagtaattcactgaacttacgatcgttc
gaattccaaggactcctgcctcacatgacagagccactcactgacagagg
ctgggaagtcggtcagctgtcactcagaggaaaagaatgcacgttggggt
gatatgtgagatgctcgatagcaaagacaggaataactccctaatcaaat
agtgaaatgcactatttccttcagagggaggtcaattttatttaaaacaa
aaattcccagggctggagagacagctcagcatttaagagcacttactgct
cttttttttccattatttattttttattagatattttcttcatttacatt
tcaaatgctatcctgaaagtcccctataccctccccctgccctgctcccc
tacccacccactcccgcttcctggccctggcattcccctgtactggggca
tatgatcttcgcaagaccaagggcctctcctcccattgatggccaactag
gccatcctctgctacatatgcaagtagagatacagttctggtgtgtgagg
gggtggtactggttagttcatattgttgatcctcctatagggttg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr5_102546140_102547340
seq2: B6Ng01-082J16.b_44_1226

seq1  GAATTCTCCTGTTGTAGAATGCTCCCCTCCACATCGTAGCAACAATCCAG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTCCTGTTGTAGAATGCTCCCCTCCACATCGTAGCAACAATCCAG  50

seq1  AGTTTTGGTACCAGGAACCCAGGCTCTGCCATTGCTCTGGATGCCGGTTC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTTTTGGTACCAGGAACCCAGGCTCTGCCATTGCTCTGGATGCCGGTTC  100

seq1  GTCTGTTCCTCCCTAGCTTCCTCCGCTGTCTCTTAACTGTCGCTTGGACC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCTGTTCCTCCCTAGCTTCCTCCGCTGTCTCTTAACTGTCGCTTGGACC  150

seq1  AGAACAACAGATGCTCAGTGCCTTGCCTGTTCCCAGACATTGTGCACTGT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAACAACAGATGCTCAGTGCCTTGCCTGTTCCCAGACATTGTGCACTGT  200

seq1  GCAACCCCTGTGTGGATGCATCCAATGGAGAGATGCTAAGAATTGTGGGA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAACCCCTGTGTGGATGCATCCAATGGAGAGATGCTAAGAATTGTGGGA  250

seq1  AATAGTCCGAAAGTGTAAACGATATTTAAAATATGATGTGAGGTCATGCA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATAGTCCGAAAGTGTAAACGATATTTAAAATATGATGTGAGGTCATGCA  300

seq1  AGAGAGGGCCTTCATGGACTGTATCACAGACATTCACCAATCTTAGCATC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGAGGGCCTTCATGGACTGTATCACAGACATTCACCAATCTTAGCATC  350

seq1  AAGTAATTATTGTTACCTGTGGGGATTTTTTTTCTCAGACATCCAGATGA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGTAATTATTGTTACCTGTGGGGATTTTTTTTCTCAGACATCCAGATGA  400

seq1  TAATCAGTGTAACTATCAAAGATCCTCTGTGTTTCTAAGTATATTCATTT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAATCAGTGTAACTATCAAAGATCCTCTGTGTTTCTAAGTATATTCATTT  450

seq1  TGATGCGACAGTTTCTCCACCTAATCGTAATACAGAGTTTAAGTGGACTG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGATGCGACAGTTTCTCCACCTAATCGTAATACAGAGTTTAAGTGGACTG  500

seq1  TGAGTATACAAGTTTATCATCTCTTGAATTTCTTTTGAATAGGCCTTGGT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAGTATACAAGTTTATCATCTCTTGAATTTCTTTTGAATAGGCCTTGGT  550

seq1  AAACTGTTACAGATACGAAATTTGATGTGCATATTAATAGACGCAAGAAG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAACTGTTACAGATACGAAATTTGATGTGCATATTAATAGACGCAAGAAG  600

seq1  CCCAGTCACTTTACAAAGTTAAGCATTCACAATTTATCTTCCTACAGAAA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCAGTCACTTTACAAAGTTAAGCATTCACAATTTATCTTCCTACAGAAA  650

seq1  GGAATTTCATTATCTCTCACTTAAGGCGATTTACATATATTATTTTTAAT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAATTTCATTATCTCTCACTTAAGGCGATTTACATATATTATTTTTAAT  700

seq1  CCGGAAGGAATCTGAGGAGGAATAGTCACTACAACCACACAGATCTCAGC  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCGGAAGGAATCTGAGGAGGAATAGTCACTACAACCACACAGATCTCAGC  750

seq1  CTTTATGAATGTCAATATGTAAAAGAGCAACTTGATAGGGCTCGAAAACA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTATGAATGTCAATATGTAAAAGAGCAACTTGATAGGGCTCGAAAACA  800

seq1  AAATCAGAGCTTCACTTTGCTTCACGATTGATTTTTAAAAACTCCTGTAC  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATCAGAGCTTCACTTTGCTTCACGATTGATTTTTAAAAACTCCTGTAC  850

seq1  TGAGGTGTAAGTCAGAGGAAATGAAATAAGTTCCTTTTCACGCTTGGATA  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAGGTGTAAGTCAGAGGAAATGAAATAAGTTCCTTTTCACGCTTGGATA  900

seq1  CTTTTGACAAATATATCAACCCAAATAACCATCAAACATAATAAAAATGT  950
      |||||||||||||||||||||||||||||||||||||||||| |||||||
seq2  CTTTTGACAAATATATCAACCCAAATAACCATCAAACATAAT-AAAATGT  949

seq1  ATAGCATTTCCATGACCTCCAAAGTTCCTTCATGCCCTTTATGTCATCCA  1000
      |||||||||||||||||||||||| |||||||||||||||||||||||||
seq2  ATAGCATTTCCATGACCTCCAAAG-TCCTTCATGCCCTTTATGTCATCCA  998

seq1  CTGCTCTCCAGCCCTACAAAATAATTTTAT-ATTTTCAGTTC-TGGAGGC  1048
      ||||||||||||||||||||   ||||||| ||||||||||| |||||||
seq2  CTGCTCTCCAGCCCTACAAA--TATTTTATAATTTTCAGTTCTTGGAGGC  1046

seq1  ATACTTTACGTATAGGATAAGGGGTCCATTTTTA--GTGTGCA-GTGTGC  1095
      |||||||||||||||||||  |||||||||||||  ||||||| ||||||
seq2  ATACTTTACGTATAGGATA--GGGTCCATTTTTAGTGTGTGCAGGTGTGC  1094

seq1  TCTGCTCTAATTGAATTTCTCGGTAGTGTAATATGCTCCTGTAATGCTTC  1145
      || ||||||  |||  ||||||| ||||||| |||||||    |||||||
seq2  TCCGCTCTA--TGA--TTCTCGG-AGTGTAA-ATGCTCC---GATGCTTC  1135

seq1  TCACTTTTGACTTGTCAGC-TATAATAATTCAACTTTAGAAAACTTACAG  1194
       ||| ||||||||| ||||  ||| |||||| |||      ||||||| |
seq2  CCAC-TTTGACTTG-CAGCGCATAGTAATTC-ACT-----GAACTTAC-G  1176

seq1  ATCGTTC  1201
      |||||||
seq2  ATCGTTC  1183

seq1: chr6_20284270_20284570
seq2: B6Ng01-082J16.g_321_614 (reverse)

seq1  CAACCCTATAGGAGGATCAACAACAAGAACTAACCAGGATCAACAATATG  50
      ||||||||||||||||||||||| | ||||||||||| | || |      
seq2  CAACCCTATAGGAGGATCAACAATATGAACTAACCAGTACCACC------  44

seq1  AACTAACCAGTACCCCCCAGAGCTGTGTCTCTAGTTGCATATGTAGCAGA  100
            ||   || | ||||| |||| |||||| ||||||||||||||||
seq2  ------CCCTCACACACCAGAACTGTATCTCTACTTGCATATGTAGCAGA  88

seq1  GAATGGCCTAGTAGGCCATCAATGATAGGAGAGGCCCTTGGTCTTGTGAA  150
      | |||||||||| |||||||||||  |||||||||||||||||||| |||
seq2  GGATGGCCTAGTTGGCCATCAATGGGAGGAGAGGCCCTTGGTCTTGCGAA  138

seq1  GATCATATGCCCCACTACAGGGGAATGCCAGGGCCAGGAAGCAGGAGTGG  200
      |||||||||||||| ||||||||||||||||||||||||||| |||||||
seq2  GATCATATGCCCCAGTACAGGGGAATGCCAGGGCCAGGAAGCGGGAGTGG  188

seq1  GTAGGTTGGGGAGCAGGACAGGGGAGTGGCATAGGGGACTTTCGGGATAG  250
      || ||| |||||||||| ||||||   || ||||||||||||| ||||||
seq2  GTGGGTAGGGGAGCAGGGCAGGGGGAGGGTATAGGGGACTTTCAGGATAG  238

seq1  GATTTGAAATGTAAACGAAGAAAATATCTACTAAAAAAAAAGTAA---AA  297
       |||||||||||||| |||||||||||||| ||||||| || |||   ||
seq2  CATTTGAAATGTAAATGAAGAAAATATCTAATAAAAAATAAATAATGGAA  288

seq1  AAAA--  301
      ||||  
seq2  AAAAAA  294