BAC Information

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BAC

Clone NameB6Ng01-083B07
Chromosome6 (Build37)14 (Build37)
Map Location 146,656,386 - 146,656,91066,965,826 - 66,966,542
singlet/doubletsingletsinglet
Overlap genenone
Upstream geneRassf8, Bhlhb3, Sspn, Itpr2, 4933424B01Rik, Fgfr1op2, Tm7sf3, Surb7, EG626175
Downstream geneStk38l, LOC621842, Arntl2, 1700023A16Rik, Ppfibp1, 1700034J05Rik, 2210417D09Rik, Mrps35, EG545893, Klhdc5, EG665288, LOC100039641, Pthlh, EG622129, Ccdc91, LOC100039712, LOC100039727
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-083B07.bB6Ng01-083B07.g
ACCDH897444DH897445
length972718
definitionDH897444|Mus musculus domesticus DNA, BAC clone: B6Ng01-083B07, 5' end.DH897445|Mus musculus domesticus DNA, BAC clone: B6Ng01-083B07, 3' end.
singlet/doubletsingletsinglet
BLAST hituniqueunique
Map location.(146,656,386 - 146,656,910)(66,965,826 - 66,966,542)
sequence
gaattcttcatctgcttcagaactactaagagctggctccccgagcccat
ccagcgatgagcacaggctccttttcctagagacctccgctaattgatct
ttcttcttttccctttttcctctttttcttctaatctctctccaggtatt
cctacctaaccttaacttttcctcgggttcaagacccttggaaaggcctg
tatacttattttgtgtaccatatttcctctttgctcctactctctctccc
cgctttacttctgatagcttgtcctgaatttcctctagaattttcagccc
tatcttaatcacttgataacatgtgaaaaggaacaaaagggctcctaaca
ccagaaaaaattcaaggccaaacatattccactttacttctgatagactg
tcttgaatttcgttagaaagttcaagatcagacttacctcgtaaagctgt
actcactggtactctcgttccccagctgaaaagttctgaattcatacagt
tgaatccttcttaacagtctgctttacgggaacctttattaccgcgaccc
gcagttctggttctggaatgagggatcttccttgcgccagtcccgagttt
ttttttcgtcccgggtttcggcaccaattgttattagacacgttctcacg
accggccaggaagaacaccacagaccagaatcttctgcggcaaagcttta
tttcttacatcttcaggagccagagtgtaagaagcaagagagcaagaagc
aagagagcaagaagcaagagagcaagaagcaagagagagagaaaacgaaa
ccccgtccctttttaaggagaattctccttcgcctcggacgtgtcactcc
ttgattggctgcagcccatcggccgagttgacgtcacggggaaagcagag
tacaagtagtcataagatacccttggcacatgcgcagattatttgtttac
cacttagaacacagctgtcagc
gaattcagggctagtgggagtgtcttctgtttttgtttggattagtagtg
aatatagatttcattttggcaacccctccccccaaacaaaacaaaacaaa
acagaaaacaaacaacaaccataaaagcagaaaagaaagaggaaaagaaa
gaaaagaaaagaaaaagaaaaatcgaaaagaaaaattaaaattaaaagaa
aagaggaatcgaagatctaagtgattatcccataaaccatacttgctttg
taggagggaactgggttagttggtatttaaaacaagcaagaaggaaggcg
acttcaggatgtggctcagtggtagaatgctgtcaggcacgtaccaggtc
ctagtgctcacctggataatgaatgattaagatcatcacccaagaaaacc
ttgtggtttttttttccccctgaaacacaaagatcccgtctttgtgtccc
acttgactaggactccaagactcagtcccctaataacccacagaaactca
gccctctgctccacacccttctgtactgggtccttccttgtggaatcagg
ttagccaatgcacccttctgccccttcagacctgtccattttctcagcac
ttccataccctgcctcagacagcagaccccatgggagggggcatagagct
gtaatggatggaagagattcttggatttgtcaaggagggaatgcatgtgt
gtagggggagtgggtagg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr6_146656386_146656910
seq2: B6Ng01-083B07.b_51_536 (reverse)

seq1  AATTCAGAACTTTTCAGCTGGGGGAACAGAGTACCAGTGAGTACAGCTTT  50
      ||||||||||||||||||||||| |  |||||||||||||||||||||||
seq2  AATTCAGAACTTTTCAGCTGGGGAACGAGAGTACCAGTGAGTACAGCTTT  50

seq1  ACGAGGTAAGTCTGGTCTTAAACTTTCTAACGAAATTCAAGACAGTCTAT  100
      |||||||||||||| |||| ||||||||||||||||||||||||||||||
seq2  ACGAGGTAAGTCTGATCTTGAACTTTCTAACGAAATTCAAGACAGTCTAT  100

seq1  CAGAAGTAAAGTGGAAAATAGCTTTACAAGGTACGCCTGGCCTTGAACTT  150
      ||||||||||||||||                                  
seq2  CAGAAGTAAAGTGGAA----------------------------------  116

seq1  TCTAACGAAATTCAAGACAGTCTATCAGAAGTAAAGTGGAAAATGGCTTT  200
                                                        
seq2  --------------------------------------------------  116

seq1  GCAAGGTATGTTTGGCCTTGAACTTTCTCTAGTGTTAGAAGCCCTTTTGT  250
            |||||||||||||||| ||| ||| ||||||| |||||||||||
seq2  ------TATGTTTGGCCTTGAATTTTTTCTGGTGTTAGGAGCCCTTTTGT  160

seq1  TCCTTTTCACATGTTATCAAGTGGTTAAGGCAGGGCGG---ATTCTGGAT  297
      ||||||||||||||||||||||| |||||  ||||| |   ||||| || 
seq2  TCCTTTTCACATGTTATCAAGTGATTAAGATAGGGCTGAAAATTCTAGAG  210

seq1  GAAGTTCAGGACAATCTATCAGAAGTAAAGCGGGGAGAGAGAATAGGAGC  347
      ||| |||||||||| ||||||||||||||||||||||||||| |||||||
seq2  GAAATTCAGGACAAGCTATCAGAAGTAAAGCGGGGAGAGAGAGTAGGAGC  260

seq1  AAAGAGAAAATATGGTTCACAAAATAAGTATACAGGCCTTTCCAAGGGTC  397
      |||||| ||||||||| |||||||||||||||||||||||||||||||||
seq2  AAAGAGGAAATATGGTACACAAAATAAGTATACAGGCCTTTCCAAGGGTC  310

seq1  TTGAACCCGAGGAAAAGTTTAGGTCAGGTAAGAATACCTGGGGAGAGATT  447
      ||||||||||||||||||| |||| ||||| |||||||||| ||||||||
seq2  TTGAACCCGAGGAAAAGTTAAGGTTAGGTAGGAATACCTGGAGAGAGATT  360

seq1  AGAAGGAAGGAGAAGGAAAAA--GAAAAGAAAAAAGATCAATTA------  489
      ||||| ||  |  ||||||||  |||||||| ||||||||||||      
seq2  AGAAGAAA--AAGAGGAAAAAGGGAAAAGAAGAAAGATCAATTAGCGGAG  408

seq1  ------------------------------------------GAGGAGCC  497
                                                | ||||||
seq2  GTCTCTAGGAAAAGGAGCCTGTGCTCATCGCTGGATGGGCTCGGGGAGCC  458

seq1  AGTTCTTAGTAGTTCTGAATCAGATGAA  525
      || |||||||||||||||| ||||||||
seq2  AGCTCTTAGTAGTTCTGAAGCAGATGAA  486

seq1: chr14_66965826_66966542
seq2: B6Ng01-083B07.g_71_788

seq1  GAATTCAGGG-AAGTGGGAGTGTCTTCTGTTTTTGTTTGGATTAGTAGTG  49
      ||||||||||  ||||||||||||||||||||||||||||||||||||||
seq2  GAATTCAGGGCTAGTGGGAGTGTCTTCTGTTTTTGTTTGGATTAGTAGTG  50

seq1  AATATAGATTTCATTTTGGCAACCCCTCCCCCCAAACAAAACAAAACAAA  99
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATATAGATTTCATTTTGGCAACCCCTCCCCCCAAACAAAACAAAACAAA  100

seq1  ACAGAAAACAAACAACAACCATAAAAGCAGAAAAGAAAGAGGAAAAGAAA  149
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAGAAAACAAACAACAACCATAAAAGCAGAAAAGAAAGAGGAAAAGAAA  150

seq1  GAAAAGAAAAGAAAAAGAAAAATCGAAAAGAAAAATTAAAATTAAAAGAA  199
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAAAGAAAAGAAAAAGAAAAATCGAAAAGAAAAATTAAAATTAAAAGAA  200

seq1  AAGAGGAATCGAAGATCTAAGTGATTATCCCATAAACCATACTTGCTTTG  249
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGAGGAATCGAAGATCTAAGTGATTATCCCATAAACCATACTTGCTTTG  250

seq1  TAGGAGGGAACTGGGTTAGTTGGTATTTAAAACAAGCAAGAAGGAAGGCG  299
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGGAGGGAACTGGGTTAGTTGGTATTTAAAACAAGCAAGAAGGAAGGCG  300

seq1  ACTTCAGGATGTGGCTCAGTGGTAGAATGCTGTCAGGCACGTACCAGGTC  349
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTTCAGGATGTGGCTCAGTGGTAGAATGCTGTCAGGCACGTACCAGGTC  350

seq1  CTAGTGCTCACCTGGATAATGAATGATTAAGATCATCACCCAAGAAAACC  399
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAGTGCTCACCTGGATAATGAATGATTAAGATCATCACCCAAGAAAACC  400

seq1  TTGTGGTTTTTTTTTCCCCCTGAAACACAAAGATCCCGTCTTTGTGTCCC  449
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGTGGTTTTTTTTTCCCCCTGAAACACAAAGATCCCGTCTTTGTGTCCC  450

seq1  ACTTGACTAGGACTCCAAGACTCAGTCCCCTAATAACCCACAGAAACTCA  499
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTTGACTAGGACTCCAAGACTCAGTCCCCTAATAACCCACAGAAACTCA  500

seq1  GCCCTCTGCTCCACACCCTTCTGTACTGGGTCCTTCCTTGTGGAATCAGG  549
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCCTCTGCTCCACACCCTTCTGTACTGGGTCCTTCCTTGTGGAATCAGG  550

seq1  TTAGCCAATGCACCCTTCTGCCCCTTCAGACCTGTCCATTTTCTCAGCAC  599
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAGCCAATGCACCCTTCTGCCCCTTCAGACCTGTCCATTTTCTCAGCAC  600

seq1  TTCCATACCCTGCCTCAGACAGCAGACCCCATGGGAGGGGGCATAGAGCT  649
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCCATACCCTGCCTCAGACAGCAGACCCCATGGGAGGGGGCATAGAGCT  650

seq1  GTAATGGATGGAAGAGATTCTTGGATTTGTCAAGGAGGGAATGCATGTGT  699
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTAATGGATGGAAGAGATTCTTGGATTTGTCAAGGAGGGAATGCATGTGT  700

seq1  GTAGGGGGAGTGGGTAGG  717
      ||||||||||||||||||
seq2  GTAGGGGGAGTGGGTAGG  718