BAC Information

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BAC

Clone NameB6Ng01-083H08
Chromosome3 (Build37)6 (Build37)
Map Location 71,831,401 - 71,832,099109,220,795 - 109,221,867
singlet/doubletsingletsinglet
Overlap genenone
Upstream geneEG667377, LOC667385
Downstream geneLOC100041459, 2010204N08Rik
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-083H08.bB6Ng01-083H08.g
ACCDH897716DH897717
length6981,058
definitionDH897716|Mus musculus domesticus DNA, BAC clone: B6Ng01-083H08, 5' end.DH897717|Mus musculus domesticus DNA, BAC clone: B6Ng01-083H08, 3' end.
singlet/doubletsingletsinglet
BLAST hituniqueunique
Map location.(71,831,401 - 71,832,099)(109,220,795 - 109,221,867)
sequence
gaattcctgatctttccaaacttttatcatgaatgggtgttggatcttgt
caaatgcttttcctgcatctaacgagatgatcatgtggattttgtcttcc
attttgattatataatggattacattgatggattttctgatattaaacca
tccctgcatccctggaataaaacctacttggtcaggatggatgattgctt
taatgtgttcttggattctgttagccagaattttattgacgatttttgcc
tcgatattcataagacaaattggcctgaagttctctagctttgctggatc
tttccgtggtttaggtatcagagtaatagtggcttcataaaatgagttgg
gtagagtaccttctacttctattttgtgaaatagtttgtgcagaattgga
attatatcttctttgaaggtctgatagaactctgcactaaacccatctgg
tcctgggctttttttggttgggagactattaataactgcttctatttctt
taggtgatatgggactgtttagatggtcaacttgatcctgattcaacttt
ggtacctgggatccgtccacaaatttgtccatttcttccaggttttccac
ttttgttgagtatagccttttgtataatgatctgatggtgtgttggattt
cttcaggatctgttgttatgtctcccttttcatttctgattttgataa
gaattccatggaaattgtcacctgtcatgcgattactcatataggcatat
atacatatacataattagtaaataaattttaatatatatgtatatatata
tgtaaaagcttcaagattaaaaaataaaaagatgtgtgcatttcttatca
ccagccaactgtaacttgaatagaaatgagacaaagtccagtgatcccat
cattccctgggggcgtgtcaaagtattaagtaaccaagttaccttagtta
acaatgtttatacatcttgaaaacagtcagtgtttatattttgtacttcc
cagtccctcccttgatagttctttaaaaacctaatctctactaagtaatt
aaatccatactcaaagaagccctcctagtataatttatatgcactacaat
attaatgtgttcttttctatcaggactttcccctaggcaaaatgaagcaa
gtacaacatattttaaaatcatttcacagatcatgtcattcagagatatg
atataattagtcttatgacagtacccatttaattaaattatggaagaaca
attaattaaatgacaaaaggatgaaaacatcaaaaattaacatcccattg
acatcaatatgtcaaaacgagaatgccattatggatacaaatatttaaat
tgataggctctcataaagaatgaaattccactgttgcaagcattttgact
atggcagagttaagaattcattttaacatacgaggatagaacttcccaca
gcatagacaaaccatcttgaaaggcaaatttatcaagaaaatatctataa
tcttaaactttcagtcagtggtagttgatgtttctgttgttctttggttt
tggtacattttcttctgtaaaaactctgtgctgcagaagtcacatacggc
tgaaggtcaacctaactacacaaggactcaaccaaaaggagatcttcaga
ccatctcattatgaatatcgatgcaaaatacttattaaaattcttgcaaa
ctgaatcaggacacatcaaatcatcatcacacatcagtagcttcatccag
gatgcaag
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr3_71831401_71832099
seq2: B6Ng01-083H08.b_42_739 (reverse)

seq1  TTAACAAAATCAGAAATGAAAAGGGAGACATAACAACAGATCCTGAAGAA  50
      ||| ||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTATCAAAATCAGAAATGAAAAGGGAGACATAACAACAGATCCTGAAGAA  50

seq1  ATCCAAAACACCATCAGATCCTTCTACAAAAGGCTATACTCAACAAAACT  100
      |||||| ||||||||||||| || |||||||||||||||||||||||| |
seq2  ATCCAACACACCATCAGATCATTATACAAAAGGCTATACTCAACAAAAGT  100

seq1  GGAAAACCTGGATGAAATGGACAAATTTCTGGACAGATACCAGGTACCAA  150
      |||||||||||| ||||||||||||||| ||||| ||| |||||||||||
seq2  GGAAAACCTGGAAGAAATGGACAAATTTGTGGACGGATCCCAGGTACCAA  150

seq1  AGTTGAATCAGGATCAAGTTGACCATCTAAACAGTCCCATATCACCTAAA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTTGAATCAGGATCAAGTTGACCATCTAAACAGTCCCATATCACCTAAA  200

seq1  GAAATAGAAGCAGTTATTAATAGTCTCCCAACCAAAAAAAGCCCAGGACC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAATAGAAGCAGTTATTAATAGTCTCCCAACCAAAAAAAGCCCAGGACC  250

seq1  AGATGGGTTTAGTGCAGAGTTCTATCAGACCTTCAAAGAAGATCTAATTC  300
      ||||||||||||||||||||||||||||||||||||||||||| ||||||
seq2  AGATGGGTTTAGTGCAGAGTTCTATCAGACCTTCAAAGAAGATATAATTC  300

seq1  CAATTCTGCACAAACTATTTCACAAAATAGAAGTAGAAGGTACTCTACCC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAATTCTGCACAAACTATTTCACAAAATAGAAGTAGAAGGTACTCTACCC  350

seq1  AACTCATTTTATGAAGCCACTATTACTCTGATACCTAAACCACAGAAAGA  400
      ||||||||||||||||||||||||||||||||||||||||||| ||||||
seq2  AACTCATTTTATGAAGCCACTATTACTCTGATACCTAAACCACGGAAAGA  400

seq1  TCCAACAAAGATAGAGAACTTCAGACCAATTTCTCTTATGAATATCGATG  450
      |||| ||||| ||||||||||||| ||||||| ||||||||||||||| |
seq2  TCCAGCAAAGCTAGAGAACTTCAGGCCAATTTGTCTTATGAATATCGAGG  450

seq1  CAAAAATCCTCAATAAAATTCTCGCTAACCGAATCCAAGAACACATTAAA  500
      |||||||| ||||||||||||| |||||| ||||||||||||||||||||
seq2  CAAAAATCGTCAATAAAATTCTGGCTAACAGAATCCAAGAACACATTAAA  500

seq1  GCAATCATCCATCCTGACCAAGTAGGTTTTATTCCAGGGATGCAGGGATG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAATCATCCATCCTGACCAAGTAGGTTTTATTCCAGGGATGCAGGGATG  550

seq1  GTTTAATATACGAAAATCCATCAATGTAATCCATTATATAAACAAACTCA  600
      |||||||||  |||||||||||||||||||||||||||||| |||| |  
seq2  GTTTAATATCAGAAAATCCATCAATGTAATCCATTATATAATCAAAATGG  600

seq1  AAGACAAAAATCACATGATCATCTCGTTAGATGCAGAAAAAGCATTTGAC  650
      |||||||||  ||||||||||||||||||||||||| |||||||||||||
seq2  AAGACAAAATCCACATGATCATCTCGTTAGATGCAGGAAAAGCATTTGAC  650

seq1  AAGATCCAACACCCATTCATGATAAAAGTTTTGGAAAGATCAGGAATTC  699
      |||||||||||||||||||||||||||| ||||||||||||||||||||
seq2  AAGATCCAACACCCATTCATGATAAAAG-TTTGGAAAGATCAGGAATTC  698

seq1: chr6_109220795_109221867
seq2: B6Ng01-083H08.g_67_1124 (reverse)

seq1  CTTGCATCCCTGGGATGAAGCCTACTTGATTGTGGTGATGATGATTTTGA  50
      |||||||||   |||||||| |||| ||| ||| |||||||||| |||||
seq2  CTTGCATCC--TGGATGAAG-CTAC-TGA-TGT-GTGATGATGA-TTTGA  43

seq1  TGTGTTCTTGGATTCAGTTTGCAAGTATTTTATTAAGTATTTTTGCATCG  100
      ||||| ||  ||||||||||||||| |||||| |||||| ||||||||||
seq2  TGTGTCCT--GATTCAGTTTGCAAGAATTTTAATAAGTA-TTTTGCATCG  90

seq1  ATATTCATAATTGAGATTGGTCTGAAGATCTCCTTTTTGGTTGAGTCCTT  150
      |||||||||| ||||| |||||||||||||||| ||||||||||||||||
seq2  ATATTCATAA-TGAGA-TGGTCTGAAGATCTCC-TTTTGGTTGAGTCCTT  137

seq1  GTGTAGTTTAGGTTGACC-TCAGCTGTATGTGACTTCTGCAGCACAGAGT  199
      |||||| ||||||||||| ||||| |||||||||||||||||||||||||
seq2  GTGTAG-TTAGGTTGACCTTCAGCCGTATGTGACTTCTGCAGCACAGAGT  186

seq1  TTTTACAGAAGAAAATGTACCAAAACCAAAGAACAACAGAAACATCAACT  249
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTACAGAAGAAAATGTACCAAAACCAAAGAACAACAGAAACATCAACT  236

seq1  ACCACTGACTG-AAGTTTAAGATTATAGATATTTTCTTGATAAATTTGCC  298
      ||||||||||| ||||||||||||||||||||||||||||||||||||||
seq2  ACCACTGACTGAAAGTTTAAGATTATAGATATTTTCTTGATAAATTTGCC  286

seq1  TTTCAAGATGGTTTGTCTATGCTGTGGGAAGTTCTATCCTCGTATGTTAA  348
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCAAGATGGTTTGTCTATGCTGTGGGAAGTTCTATCCTCGTATGTTAA  336

seq1  AATGAATTCTTAACTCTGCCATAGTCAAAATGCTTGCAACAGTGGAATTT  398
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATGAATTCTTAACTCTGCCATAGTCAAAATGCTTGCAACAGTGGAATTT  386

seq1  CATTCTTTATGAGAGCCTATCAATTTAAATATTTGTATCCATAATGGCAT  448
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATTCTTTATGAGAGCCTATCAATTTAAATATTTGTATCCATAATGGCAT  436

seq1  TCTCGTTTTGACATATTGATGTCAATGGGATGTTAATTTTTGATGTTTTC  498
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTCGTTTTGACATATTGATGTCAATGGGATGTTAATTTTTGATGTTTTC  486

seq1  ATCCTTTTGTCATTTAATTAATTGTTCTTCCATAATTTAATTAAATGGGT  548
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCCTTTTGTCATTTAATTAATTGTTCTTCCATAATTTAATTAAATGGGT  536

seq1  ACTGTCATAAGACTAATTATATCATATCTCTGAATGACATGATCTGTGAA  598
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTGTCATAAGACTAATTATATCATATCTCTGAATGACATGATCTGTGAA  586

seq1  ATGATTTTAAAATATGTTGTACTTGCTTCATTTTGCCTAGGGGAAAGTCC  648
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGATTTTAAAATATGTTGTACTTGCTTCATTTTGCCTAGGGGAAAGTCC  636

seq1  TGATAGAAAAGAACACATTAATATTGTAGTGCATATAAATTATACTAGGA  698
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGATAGAAAAGAACACATTAATATTGTAGTGCATATAAATTATACTAGGA  686

seq1  GGGCTTCTTTGAGTATGGATTTAATTACTTAGTAGAGATTAGGTTTTTAA  748
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGCTTCTTTGAGTATGGATTTAATTACTTAGTAGAGATTAGGTTTTTAA  736

seq1  AGAACTATCAAGGGAGGGACTGGGAAGTACAAAATATAAACACTGACTGT  798
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAACTATCAAGGGAGGGACTGGGAAGTACAAAATATAAACACTGACTGT  786

seq1  TTTCAAGATGTATAAACATTGTTAACTAAGGTAACTTGGTTACTTAATAC  848
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCAAGATGTATAAACATTGTTAACTAAGGTAACTTGGTTACTTAATAC  836

seq1  TTTGACACGCCCCCAGGGAATGATGGGATCACTGGACTTTGTCTCATTTC  898
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGACACGCCCCCAGGGAATGATGGGATCACTGGACTTTGTCTCATTTC  886

seq1  TATTCAAGTTACAGTTGGCTGGTGATAAGAAATGCACACATCTTTTTATT  948
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTCAAGTTACAGTTGGCTGGTGATAAGAAATGCACACATCTTTTTATT  936

seq1  TTTTAATCTTGAAGCTTTTACATATATATATACATATATATTAAAATTTA  998
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTAATCTTGAAGCTTTTACATATATATATACATATATATTAAAATTTA  986

seq1  TTTACTAATTATGTATATGTATATATGCCTATATGAGTTTATGTGCATGA  1048
      |||||||||||||||||||||||||||||||||||||  ||   ||||||
seq2  TTTACTAATTATGTATATGTATATATGCCTATATGAG--TAATCGCATGA  1034

seq1  CATGTGTGCAATTTCCATGGAATTC  1073
      || |||  |||||||||||||||||
seq2  CAGGTG-ACAATTTCCATGGAATTC  1058