BAC Information

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BAC

Clone NameB6Ng01-083P10
Chromosome6 (Build37)
Map Location 57,350,816 - 57,351,972
singlet/doubletsinglet
Overlap genenone
Upstream geneEG666688, Lsm5, 5830411G16Rik, LOC100042288, Kbtbd2, Fkbp9, Nt5c3, LOC100042327, V1rc21, V1rc19, V1rc20, EG434016, V1rc32, V1rc30, V1rc1, V1rc3, EG626397, V1rc4, V1rc5, V1rc7, V1rc6, LOC100041445, V1r-ps6, V1rc29, V1rc16, V1rc26
Downstream geneV1rc27, EG434017, LOC666822, Ppm1k, Herc5, Pigy, Lancl2, AW146242, V1rc28, LOC626582, V1rc23, V1rc24, LOC100041514, V1rc18, V1rc8, V1rc17, EG633683, LOC626649, LOC626659, LOC626672, LOC666893, LOC100041571, V1rc33, LOC626724, V1rc25, V1rc2
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-083P10.bB6Ng01-083P10.g
ACCDH898066DH898067
length1,2101,141
definitionDH898066|Mus musculus domesticus DNA, BAC clone: B6Ng01-083P10, 5' end.DH898067|Mus musculus domesticus DNA, BAC clone: B6Ng01-083P10, 3' end.
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
gaattcttaacagagcaatctcatgtggccaggaatcacttaaagaaatg
gtcaatgtccttagtcatcagggaaatacaaatcaaaacgatcctgatat
tccatcttatgacagtcagaatgtttaaattcaaaacttaagggatagta
cattacatgctggtgaggatagggagaatggaaggaaacactctttcatt
actggtgggactgcaaactggtacatccaaccaggaaataaatctggcga
tttctcagaaaattggaaatagttctagctgaagacccagttatacaact
cctgggcatatgcccaaaatatactgcatcatactataataacatatact
ccaatatgttcatggcagctttatgcataatagccataaactgaaagcaa
accagatgttcatcaactgaagaatggatacagaaaatgtggttcacaat
ggaatagtccttagctattaaaaacaaagacatcatgaattttgcaggca
aacagatggaactagaaaatatcctaagtgaggtaacccagatctaaaag
ggtaagtatgttatgtgcccactgataaatttatattaattataaagtct
tgcccaagctagtatcttgctggcaagaattcactcagacaaccggatcc
ttctacagtaaagcttttattgcttcaacataaggaagaccccaatcccg
gaaaatggtgctgcttatatagccctcaccgtgacgtttcaatacctgag
gtggcatgacagcacctgattagttgctcgcccatcaccccattactacg
ccccgagatgggcggtgactgggcgtgaatacactcttgcgcttgcgcat
aaggcttgtttactagttaggcacagtggaagccagcgccatcttataat
ggcaattgctcacgacatggctctccacatctcccctttttattttatta
aaatttgagttggtctagcctctgcagtcgtgtccatctgctgtgctctg
tcttagtcattctcatgtcacagcttttctgtcataggtacctatcgcca
ccaggcccgtgtcttagtgatcgtgcatgaggaagttgccgtctctgata
ccacatgctatgtgacagtactactatgaactaggcgactctacaaaagg
cagcaaacaaatgtaactcacaagggcaagtgcgaatacatgagctggaa
ttttctgtca
gaattcattttcattgaaacactcaattatctactgaagcttatacagtt
cacctgtttgtaaggttaaattttcatgaatttaatagataagcgacatg
agattttcagatacttttgaaatacatagaaaagatttcctttattagaa
atctttgcaacagaataaacaaatctctcaaaaattttaaagaaattatc
atataaagtgaaaatgtcttctaatttcttaggccttgaattgaaacttt
tctaattattcccaagtatacaaaacttatcaaactagaaattattgatt
aacactaaagtagttaatatttcttgtctatccctagcattagtttcatt
gtattaaatgcatacagtcagatatctggataaagaagtaaaatgaaaaa
ttacaaagtacaatttaaatgtagctgaaaactatgaatgcactcctgca
caccaataaatgtgtgttctttgtttttaccctctaaggtatttcagtgt
tttgttaaaggaattgaaaactaacagagttggcaattggaattcataga
gtacacgctcaggagaatactgtgccagatttgatctctaaaatattgca
ttcggaataactttttacaggaatattcattgtaaaaataatgggtttta
tggtatgttcattcaaaatataataaccattgatgaacttcacccttcac
cctttaaccttctctctctctctctctctccctctctctctcagtcaatc
aatcaatcaatcagtcaatcaatcaatcaatcattctgctacacccatgt
actctttccaaaaaccccattctagtgccatatagataaacagagatcac
attgagtgaaacctatgttgtttataaatgtttacagctggtaccttcgt
gtctacaagtatctgttgaaggcttactacacagtatggcacaaaagtat
atttctaaatagagacttctctaatcctttagacagaatattctgctctt
ctacactacttacagctctactataatgaagagaacagaaacaactcaca
ggcttgctttgacaacattcttgtagaatgtggcttgaagtagttataat
gagaaatgtcatcagttaatctctgatgtctcatacatgtc
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr6_57350816_57351972
seq2: B6Ng01-083P10.g_70_1210 (reverse)

seq1  GACATG-ATGAGACTACAGGGAGATTAACTGATGACATTTCTTCCATATA  49
      |||||| |||||||  ||  ||||||||||||||||||||| ||  ||||
seq2  GACATGTATGAGACATCA--GAGATTAACTGATGACATTTC-TCATTATA  47

seq1  ACTACTTCCAAGGGCCACATTCTACAAGGATGTTTGTCAAAGGCCAAGCC  99
      |||||||| |   ||||||||||||||| ||| |||||||||  ||||||
seq2  ACTACTTCAA---GCCACATTCTACAAGAATG-TTGTCAAAG--CAAGCC  91

seq1  TGGTGAG-TGTTTCTTGTTCCTCTTCATTATAGTAAGAGCTGTAAGTAGG  148
      | ||||| |||||| |||| |||||||||||||| |||||||||||||| 
seq2  T-GTGAGTTGTTTC-TGTT-CTCTTCATTATAGT-AGAGCTGTAAGTAG-  136

seq1  TGGTAGAAGGAAGCAGAATATTCTGTCTAAAGGATTAGAGAAGTCTCTAT  198
        |||||||  |||||||||||||||||||||||||||||||||||||||
seq2  -TGTAGAAG--AGCAGAATATTCTGTCTAAAGGATTAGAGAAGTCTCTAT  183

seq1  TTAGAATATTACTTTTGTGCCATACTGTGTAGTAAGCCTTCAACAGATAC  248
      ||||||   |||||||||||||||||||||||||||||||||||||||||
seq2  TTAGAAATATACTTTTGTGCCATACTGTGTAGTAAGCCTTCAACAGATAC  233

seq1  TTGTAGACACGAAGGTACCAGCTGTAAACATTTATAAAACAACATAGGTT  298
      ||||||||||||||||||||||||||||||||||| ||||||||||||||
seq2  TTGTAGACACGAAGGTACCAGCTGTAAACATTTAT-AAACAACATAGGTT  282

seq1  TCACTCAATGTGATCTCTGTTTATCTATATGGCACTAGAATGGGGTTTTT  348
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCACTCAATGTGATCTCTGTTTATCTATATGGCACTAGAATGGGGTTTTT  332

seq1  GGAAAGAGTACATGGGTGTAGCAGAATGATTGATTGATTGATTGACTGAT  398
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAAAGAGTACATGGGTGTAGCAGAATGATTGATTGATTGATTGACTGAT  382

seq1  TGATTGATTGATTGACTGAGAGAGAGAGGGAGAGAGAGAGAGAGAGAGAA  448
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGATTGATTGATTGACTGAGAGAGAGAGGGAGAGAGAGAGAGAGAGAGAA  432

seq1  GGTTAAAGGGTGAAGGGTGAAGTTCATCAATGGTTATTATATTTTGAATG  498
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTTAAAGGGTGAAGGGTGAAGTTCATCAATGGTTATTATATTTTGAATG  482

seq1  AACATACCATAAAACCCATTATTTTTACAATGAATATTCCTGTAAAAAGT  548
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACATACCATAAAACCCATTATTTTTACAATGAATATTCCTGTAAAAAGT  532

seq1  TATTCCGAATGCAATATTTTAGAGATCAAATCTGGCACAGTATTCTCCTG  598
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTCCGAATGCAATATTTTAGAGATCAAATCTGGCACAGTATTCTCCTG  582

seq1  AGCGTGTACTCTATGAATTCCAATTGCCAACTCTGTTAGTTTTCAATTCC  648
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCGTGTACTCTATGAATTCCAATTGCCAACTCTGTTAGTTTTCAATTCC  632

seq1  TTTAACAAAACACTGAAATACCTTAGAGGGTAAAAACAAAGAACACACAT  698
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTAACAAAACACTGAAATACCTTAGAGGGTAAAAACAAAGAACACACAT  682

seq1  TTATTGGTGTGCAGGAGTGCATTCATAGTTTTCAGCTACATTTAAATTGT  748
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTATTGGTGTGCAGGAGTGCATTCATAGTTTTCAGCTACATTTAAATTGT  732

seq1  ACTTTGTAATTTTTCATTTTACTTCTTTATCCAGATATCTGACTGTATGC  798
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTTTGTAATTTTTCATTTTACTTCTTTATCCAGATATCTGACTGTATGC  782

seq1  ATTTAATACAATGAAACTAATGCTAGGGATAGACAAGAAATATTAACTAC  848
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTAATACAATGAAACTAATGCTAGGGATAGACAAGAAATATTAACTAC  832

seq1  TTTAGTGTTAATCAATAATTTCTAGTTTGATAAGTTTTGTATACTTGGGA  898
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTAGTGTTAATCAATAATTTCTAGTTTGATAAGTTTTGTATACTTGGGA  882

seq1  ATAATTAGAAAAGTTTCAATTCAAGGCCTAAGAAATTAGAAGACATTTTC  948
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAATTAGAAAAGTTTCAATTCAAGGCCTAAGAAATTAGAAGACATTTTC  932

seq1  ACTTTATATGATAATTTCTTTAAAATTTTTGAGAGATTTGTTTATTCTGT  998
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTTTATATGATAATTTCTTTAAAATTTTTGAGAGATTTGTTTATTCTGT  982

seq1  TGCAAAGATTTCTAATAAAGGAAATCTTTTCTATGTATTTCAAAAGTATC  1048
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCAAAGATTTCTAATAAAGGAAATCTTTTCTATGTATTTCAAAAGTATC  1032

seq1  TGAAAATCTCATGTCGCTTATCTATTAAATTCATGAAAATTTAACCTTAC  1098
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAAAATCTCATGTCGCTTATCTATTAAATTCATGAAAATTTAACCTTAC  1082

seq1  AAACAGGTGAACTGTATAAGCTTCAGTAGATAATTGAGTGTTTCAATGAA  1148
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAACAGGTGAACTGTATAAGCTTCAGTAGATAATTGAGTGTTTCAATGAA  1132

seq1  AATGAATTC  1157
      |||||||||
seq2  AATGAATTC  1141