BAC Information

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BAC

Clone NameB6Ng01-084I09
Chromosome6 (Build37)
Map Location 35,138,335 - 35,139,348
singlet/doubletsinglet
Overlap geneNup205
Upstream geneAkr1b3, Akr1b8, LOC664942, 2310005E10Rik, Akr1b7, Bpgm, LOC100039184, Cald1, Agbl3, Tmem140, 3110062M04Rik, 9530020G05Rik, Stra8, 2010107G12Rik, Cnot4
Downstream gene1810058I24Rik, Slc13a4, BC064033, 1700065J11Rik, Mtpn, LOC100039312, LOC100039327
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-084I09.bB6Ng01-084I09.g
ACCDH898453DH898454
length1,0131,163
definitionDH898453|Mus musculus domesticus DNA, BAC clone: B6Ng01-084I09, 5' end.DH898454|Mus musculus domesticus DNA, BAC clone: B6Ng01-084I09, 3' end.
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
gaattcactctgtagaccaagctggctttgaactcagttccacctgccac
tgcctcctgagtgctgggattaaaggtgtgtgccaccacctctttaactg
tgctgcttcttgttattggtaccctggcatatggttgatgggcctttgaa
tctgctatgccaggaatgatgcagggagtagaaaccctaagggtcccctt
aacattaagacctgcttatttgaatacattttggcatacgtttcaaacac
atttgagctttattactaaataatcaattccttttctaggagagcatcag
cagccacatttccctggcctcaccaggggattggtagctgtccttttata
ctgggatggaaagcggtgcattgcaaattctctcagaaccctgatacagt
ctagacgaggaaagacatggacattagaactcaggtctgtttgcctttgg
ggacttacagggttaatgtgaaattacttgaatttgagttttggaaataa
cagtttttccttagtgtgtaccctttcagtaaactgtaagctcaggtcaa
taatatactggactactctttccagagtaataccttagtttaaacctgac
ttatttgcaagtgaaaaatcacagagatttatttaactccagtgatttag
aaagggtaaaaagaacaagactataattcatcctggttgtttgtaataat
agactgttgtcaaaacagtatctttattcgttatagcttttgtttgtttc
tttccttgcagtccagagctggtttccatgacaacacgctttacagatga
gctgatggagcaaggattgacttacaaagtccttactttgctgtcacaga
ttgatgtgaataatgagtttgaagaaactacagagagagagaggttttgg
gcagtgagaaacaccgcaaggagcaagggttctatagatgacttcatggg
tgtctttgacgaagtggaacagaagagcttaagaaatattcaattccctt
aggcagatgaaaa
gaattctcacctgaggaataccgaatggcagagaagcacctgaaaaaatg
ctcaacatccttaatcatcagggaaatgcaaatcaaaacaaccctgagat
tccacctcacaccagtcagaatggctaagatcaaaaattcaggtgacagc
agatgctggcgaggatgtggagaaagaggaacactcctccattgttggtg
ggattgcaggcttgtacaaccactctggagatcagtctggcggttcctca
gaaaactggatatagtactaccggaggatccagcaatacctctcctgggc
atatatccagaagatgccccaactggtaagaaggacacatgctccactat
gttcatagcagccttatttataatagccagaagctggaaggaacccagat
gcccctcaacagaggaatggatacagaagatgtggtacatctacacaatg
gagtactactcagctattaaaaagaatgaatttatgaaattcctggccaa
atggatggacctggagggcatcatcctgagtgaggtaacacattcacaaa
ggaactcacacaatatgtactcactgataagtggatattagcccaaaacc
taagatacccaagatataagatacaatttcctaaacacatgaaactcaag
aaaaatgaagactgaagtgtgaacactatgcccctccttagaagtgggag
caaaacacccttggaaggagttacagagacaaagtttggagttgagataa
aaggatggaccatgtagacactaccatatccggggatccatcccataatc
agcttccaaatgcggacaccattgcatacactagcaagattatgctgaaa
ggaccctgatatagctgtctcttgtcagagtatgcctgggcctagcaaac
atagaagtggatgctcacagtcggctattggatggatcacatggccccat
gaggagctagagaagtaccaaagatgctaaagggatctgcaaccctatag
tgaacaacatatgactaaccagtaccctgagctcttgactctagctgcta
tgcatcaaagatggcctagtgcatcctgtaagagaaggccattgaaacgc
caacttttattccagtacaggggaacgcaggccataaagtaatggggtgt
gtatgggaaaagg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr6_35138335_35139348
seq2: B6Ng01-084I09.b_42_1054

seq1  GAATTCACTCTGTAGACCAAGCTGGCTTTGAACTCAGTTCCACCTGCCAC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCACTCTGTAGACCAAGCTGGCTTTGAACTCAGTTCCACCTGCCAC  50

seq1  TGCCTCCTGAGTGCTGGGATTAAAGGTGTGTGCCACCACCTCTTTAACTG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCCTCCTGAGTGCTGGGATTAAAGGTGTGTGCCACCACCTCTTTAACTG  100

seq1  TGCTGCTTCTTGTTATTGGTACCCTGGCATATGGTTGATGGGCCTTTGAA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCTGCTTCTTGTTATTGGTACCCTGGCATATGGTTGATGGGCCTTTGAA  150

seq1  TCTGCTATGCCAGGAATGATGCAGGGAGTAGAAACCCTAAGGGTCCCCTT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGCTATGCCAGGAATGATGCAGGGAGTAGAAACCCTAAGGGTCCCCTT  200

seq1  AACATTAAGACCTGCTTATTTGAATACATTTTGGCATACGTTTCAAACAC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACATTAAGACCTGCTTATTTGAATACATTTTGGCATACGTTTCAAACAC  250

seq1  ATTTGAGCTTTATTACTAAATAATCAATTCCTTTTCTAGGAGAGCATCAG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTGAGCTTTATTACTAAATAATCAATTCCTTTTCTAGGAGAGCATCAG  300

seq1  CAGCCACATTTCCCTGGCCTCACCAGGGGATTGGTAGCTGTCCTTTTATA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGCCACATTTCCCTGGCCTCACCAGGGGATTGGTAGCTGTCCTTTTATA  350

seq1  CTGGGATGGAAAGCGGTGCATTGCAAATTCTCTCAGAACCCTGATACAGT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGGGATGGAAAGCGGTGCATTGCAAATTCTCTCAGAACCCTGATACAGT  400

seq1  CTAGACGAGGAAAGACATGGACATTAGAACTCAGGTCTGTTTGCCTTTGG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAGACGAGGAAAGACATGGACATTAGAACTCAGGTCTGTTTGCCTTTGG  450

seq1  GGACTTACAGGGTTAATGTGAAATTACTTGAATTTGAGTTTTGGAAATAA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGACTTACAGGGTTAATGTGAAATTACTTGAATTTGAGTTTTGGAAATAA  500

seq1  CAGTTTTTCCTTAGTGTGTACCCTTTCAGTAAACTGTAAGCTCAGGTCAA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGTTTTTCCTTAGTGTGTACCCTTTCAGTAAACTGTAAGCTCAGGTCAA  550

seq1  TAATATACTGGACTACTCTTTCCAGAGTAATACCTTAGTTTAAACCTGAC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAATATACTGGACTACTCTTTCCAGAGTAATACCTTAGTTTAAACCTGAC  600

seq1  TTATTTGCAAGTGAAAAATCACAGAGATTTATTTAACTCCAGTGATTTAG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTATTTGCAAGTGAAAAATCACAGAGATTTATTTAACTCCAGTGATTTAG  650

seq1  AAAGGGTAAAAAGAACAAGACTATAATTCATCCTGGTTGTTTGTAATAAT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGGGTAAAAAGAACAAGACTATAATTCATCCTGGTTGTTTGTAATAAT  700

seq1  AGACTGTTGTCAAAACAGTATCTTTATTCGTTATAGC-TTTGTTTGTTTC  749
      ||||||||||||||||||||||||||||||||||||| ||||||||||||
seq2  AGACTGTTGTCAAAACAGTATCTTTATTCGTTATAGCTTTTGTTTGTTTC  750

seq1  TTTTCCTTGCAGTCCAGAGCTGGTTTCCATGACAACACGCTTTACAGATG  799
       |||||||||||||||||||||||||||||||||||||||||||||||||
seq2  -TTTCCTTGCAGTCCAGAGCTGGTTTCCATGACAACACGCTTTACAGATG  799

seq1  AGCTGATGGAGCAAGGATTGACTTACAAAGTCCTTACTTTGCTGTCACAG  849
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCTGATGGAGCAAGGATTGACTTACAAAGTCCTTACTTTGCTGTCACAG  849

seq1  ATTGATGTGAATAATGAGTTTG-AGAAACTACAGAGAGAGAGAGG-TTTG  897
      |||||||||||||||||||||| |||||||||||||||||||||| ||||
seq2  ATTGATGTGAATAATGAGTTTGAAGAAACTACAGAGAGAGAGAGGTTTTG  899

seq1  GGCAGTGAGAAACACCGCAAAGAGGCAAGGGTTCTATAAGATGACCTCAT  947
      |||||||||||||||||||| || ||||||||||||| ||||||| ||||
seq2  GGCAGTGAGAAACACCGCAAGGA-GCAAGGGTTCTAT-AGATGACTTCAT  947

seq1  GGGTGTCTTTGACAGATGTGGAACAGAAGAGCTTACAGAATATTCATTTC  997
      ||||||||||||| || ||||||||||||||||||   |||||||| |||
seq2  GGGTGTCTTTGAC-GAAGTGGAACAGAAGAGCTTAAGAAATATTCAATTC  996

seq1  ACTTAGGCAGATGAAAA  1014
       ||||||||||||||||
seq2  CCTTAGGCAGATGAAAA  1013