BAC Information

Click to search

BAC

Clone NameB6Ng01-084I23
Chromosome6 (Build37)
Map Location 119,649,831 - 119,828,511
singlet/doubletdoublet
Overlap geneErc1
Upstream geneCacna1c, Dcp1b, Cacna2d4, Lrtm2, Adipor2, Wnt5b, Fbxl14
Downstream geneLOC666887, Rad52, Wnk1, EG406236, Ninj2, B4galnt3, Ccdc77, Jarid1a, Il17ra, Cecr6, Cecr5, 1700072O05Rik, Cecr2, Slc25a18, Atp6v1e1, Bcl2l13
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-084I23.bB6Ng01-084I23.g
ACCDH898479DH898480
length1,157298
definitionDH898479|Mus musculus domesticus DNA, BAC clone: B6Ng01-084I23, 5' end.DH898480|Mus musculus domesticus DNA, BAC clone: B6Ng01-084I23, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(119,649,831 - 119,650,987)(119,828,214 - 119,828,511)
sequence
gaattcatagatccacctgtctctgcctccttttatgacatatctgtgta
catgcacagacatacacgcacgcatgcgcgcgcatacacacacacaaacc
tatcatataggttctgggaaatgaacagttgtcaggcttgacagtgatct
cttttacctgctaagccattttgccaacctacctacatttttaaaaaaga
tgaatgtatttcaaagtaaatcactgtctacttttacagttcataaatgt
gaataattagaatcttctggcttgtttcatccatatgctttttatttttc
tctttttccaaaagggaaaccatgagtttatatcctaagatcaagaatga
aataactgtgcattacagcacatgagctagaagcggagacaaccaagaag
catgttgctgtagtttgcactaacatgacaggctccttttcactgagggc
tcggagtggaggaacctgattccaaatttggagtgagaaatggacaaatg
ttctttgctgctaaaaagcaagcaaaataaggattgctgtaaaagaaaac
ccaaggcctaaaaccaagagatgctaagagggaagaggagagggatggaa
cagagtaaaattatagagaaaagagaacttagctggaaaatcaaacataa
agactgagacatctcaaaattggtcttcattaaagaatgcaaggtagtat
cttaacatactattatcaaagaatgtaatataccatgttagtagaataca
agccagaataatatcccagtagatgattctatattagtatgttatataat
tatattgtaatgtataacatattattaattatgctatattatatattata
gatgattatatatagatagttgaaaaatcccagcatgataattcctaaca
ctttcagggtaaaacaacataaaatctaagactagaacttcttcagttga
caaagacttttatgataaaaaactgaatgctttccctctagactagagtg
ctgctttcatcattctccttaacactgtaatggagatgactgacagaaaa
cagattaacttcaggcaatacatggctgctgagagaagagaccagtcttc
ttccaaggatgaagtctccgataggcaattcagttcccaagccattgagc
aaaaagt
catcagaccttcaaagaaaagctaataccaacaaactattccacaaaata
gaacagaaggagcactgcctaactcactctacgaagccactccccactcc
ttggtgagctgttttcttgctattcagctgcccatgctctctacataccg
agtcttatcccctcactcgatgtatggctccactttgtgactttcctctt
tattctgttttttcttttattgtaatttttcatttctaatttgttgttgt
tgttgctgttgctgctgctgctggtggtggtgtgtgtgtgggtgtgtg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr6_119649831_119650987
seq2: B6Ng01-084I23.b_45_1201

seq1  GAATTCATAGATCCACCTGTCTCTGCCTCCTTTTATGACATATCTGTGTA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCATAGATCCACCTGTCTCTGCCTCCTTTTATGACATATCTGTGTA  50

seq1  CATGCACAGACATACACGCACGCATGCGCGCGCATACACACACACAAACC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATGCACAGACATACACGCACGCATGCGCGCGCATACACACACACAAACC  100

seq1  TATCATATAGGTTCTGGGAAATGAACAGTTGTCAGGCTTGACAGTGATCT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATCATATAGGTTCTGGGAAATGAACAGTTGTCAGGCTTGACAGTGATCT  150

seq1  CTTTTACCTGCTAAGCCATTTTGCCAACCTACCTACATTTTTAAAAAAGA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTTACCTGCTAAGCCATTTTGCCAACCTACCTACATTTTTAAAAAAGA  200

seq1  TGAATGTATTTCAAAGTAAATCACTGTCTACTTTTACAGTTCATAAATGT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAATGTATTTCAAAGTAAATCACTGTCTACTTTTACAGTTCATAAATGT  250

seq1  GAATAATTAGAATCTTCTGGCTTGTTTCATCCATATGCTTTTTATTTTTC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATAATTAGAATCTTCTGGCTTGTTTCATCCATATGCTTTTTATTTTTC  300

seq1  TCTTTTTCCAAAAGGGAAACCATGAGTTTATATCCTAAGATCAAGAATGA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTTTTCCAAAAGGGAAACCATGAGTTTATATCCTAAGATCAAGAATGA  350

seq1  AATAACTGTGCATTACAGCACATGAGCTAGAAGCGGAGACAACCAAGAAG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATAACTGTGCATTACAGCACATGAGCTAGAAGCGGAGACAACCAAGAAG  400

seq1  CATGTTGCTGTAGTTTGCACTAACATGACAGGCTCCTTTTCACTGAGGGC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATGTTGCTGTAGTTTGCACTAACATGACAGGCTCCTTTTCACTGAGGGC  450

seq1  TCGGAGTGGAGGAACCTGATTCCAAATTTGGAGTGAGAAATGGACAAATG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCGGAGTGGAGGAACCTGATTCCAAATTTGGAGTGAGAAATGGACAAATG  500

seq1  TTCTTTGCTGCTAAAAAGCAAGCAAAATAAGGATTGCTGTAAAAGAAAAC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTTTGCTGCTAAAAAGCAAGCAAAATAAGGATTGCTGTAAAAGAAAAC  550

seq1  CCAAGGCCTAAAACCAAGAGATGCTAAGAGGGAAGAGGAGAGGGATGGAA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAAGGCCTAAAACCAAGAGATGCTAAGAGGGAAGAGGAGAGGGATGGAA  600

seq1  CAGAGTAAAATTATAGAGAAAAGAGAACTTAGCTGGAAAATCAAACATAA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGAGTAAAATTATAGAGAAAAGAGAACTTAGCTGGAAAATCAAACATAA  650

seq1  AGACTGAGACATCTCAAAATTGGTCTTCATTAAAGAATGCAAGGTAGTAT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGACTGAGACATCTCAAAATTGGTCTTCATTAAAGAATGCAAGGTAGTAT  700

seq1  CTTAACATACTATTATCAAAGAATGTAATATACCATGTTAGTAGAATACA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTAACATACTATTATCAAAGAATGTAATATACCATGTTAGTAGAATACA  750

seq1  AGCCAGAATAATATCCCAGTAGATGATTCTATATTAGTATGTTATATAAT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCCAGAATAATATCCCAGTAGATGATTCTATATTAGTATGTTATATAAT  800

seq1  TATATTGTAATGTATAACATATTATTAATTATGCTATATTATATATTATA  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATATTGTAATGTATAACATATTATTAATTATGCTATATTATATATTATA  850

seq1  GATGATTATATATAGATAGTTGAAAAATCCCAGCATGATAATTCCTAACA  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATGATTATATATAGATAGTTGAAAAATCCCAGCATGATAATTCCTAACA  900

seq1  CTTTCAGGGTAAAAACAACATAAAATCTAAGACTAGAACTTCTTCAGTTG  950
      |||||||||| |||||||||||||||||||||||||||||||||||||||
seq2  CTTTCAGGGT-AAAACAACATAAAATCTAAGACTAGAACTTCTTCAGTTG  949

seq1  ACAAAGACTTTTATGAT-AAAAACTGAATGCTTTCCCTCTAAGACTAGAG  999
      ||||||||||||||||| |||||||||||||||||||||| |||||||||
seq2  ACAAAGACTTTTATGATAAAAAACTGAATGCTTTCCCTCT-AGACTAGAG  998

seq1  TGGCTGCTTTCATCATTCTCCTTAACACTGTAATGGAGATGACTGACAG-  1048
      | ||||||||||||||||||||||||||||||||||||||||||||||| 
seq2  T-GCTGCTTTCATCATTCTCCTTAACACTGTAATGGAGATGACTGACAGA  1047

seq1  AAACAGATTAACTTCAGGCAATACATGGCTGCTGAGAGAAGGAGACCCAG  1098
      |||||||||||||||||||||||||||||||||||||||| |||| ||||
seq2  AAACAGATTAACTTCAGGCAATACATGGCTGCTGAGAGAA-GAGA-CCAG  1095

seq1  TCTTC-TCCAAGGATG-AGTCTCCGATAGGC-ATTCAG-TCCCAAG-CAA  1143
      ||||| |||||||||| |||||||||||||| |||||| ||||||| || 
seq2  TCTTCTTCCAAGGATGAAGTCTCCGATAGGCAATTCAGTTCCCAAGCCAT  1145

seq1  TGAGGCCAAAAAGT  1157
      ||||  ||||||||
seq2  TGAG--CAAAAAGT  1157

seq1: chr6_119828214_119828511
seq2: B6Ng01-084I23.g_77_374 (reverse)

seq1  CACACACCCACACACACACCACCACCAGCAGCAGCAGCAACAGCAACAAC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACACACCCACACACACACCACCACCAGCAGCAGCAGCAACAGCAACAAC  50

seq1  AACAACAAATTAGAAATGAAAAATTACAATAAAAGAAAAAACAGAATAAA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACAACAAATTAGAAATGAAAAATTACAATAAAAGAAAAAACAGAATAAA  100

seq1  GAGGAAAGTCACAAAGTGGAGCCATACATCGAGTGAGGGGATAAGACTCG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGGAAAGTCACAAAGTGGAGCCATACATCGAGTGAGGGGATAAGACTCG  150

seq1  GTATGTAGAGAGCATGGGCAGCTGAATAGCAAGAAAACAGCTCACCAAGG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTATGTAGAGAGCATGGGCAGCTGAATAGCAAGAAAACAGCTCACCAAGG  200

seq1  AGTGGGGAGTGGCTTCGTAGAGTGAGTTAGGCAGTGCTCCTTCTGTTCTA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTGGGGAGTGGCTTCGTAGAGTGAGTTAGGCAGTGCTCCTTCTGTTCTA  250

seq1  TTTTGTGGAATAGTTTGTTGGTATTAGCTTTTCTTTGAAGGTCTGATG  298
      ||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTGTGGAATAGTTTGTTGGTATTAGCTTTTCTTTGAAGGTCTGATG  298