BAC Information

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BAC

Clone NameB6Ng01-084O03
Chromosome6 (Build37)
Map Location 53,879,299 - 54,049,168
singlet/doubletdoublet
Overlap geneCpvl
Upstream geneJazf1, LOC666259, LOC666516, D430007I03, Creb5, LOC384386, 1200009O22Rik
Downstream geneLOC666305, Chn2, LOC100042056, Prr15, EG640926, Wipf3, Scrn1, Fkbp14, Plekha8, LOC100041292, 2410066E13Rik, Znrf2, Nod1, A030007L17Rik, Gars, Crhr2
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-084O03.bB6Ng01-084O03.g
ACCDH898708DH898709
length1,1631,141
definitionDH898708|Mus musculus domesticus DNA, BAC clone: B6Ng01-084O03, 5' end.DH898709|Mus musculus domesticus DNA, BAC clone: B6Ng01-084O03, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(53,879,299 - 53,880,481)(54,048,011 - 54,049,168)
sequence
gaattctctcctagagaatttctctaggagagtcccaggcaagtgagaaa
ccctgcctcacaaagcaacatcaacctctggcctccacataaacatactt
gaacacacatctctatagtgtgtgcacacaagaacatgtgggcatatatc
acacacacatttttaatttacaaaaccaatagattgttttcagtgagaaa
taaaacatttgctgtctaacaaataatggggctagattattccagacttt
tgaaatctacttcataatcaaaacttgtttcacagagaatgttctgtgat
ttagatagagcattgttaggaagaaaatagaaggaacaagagatcaacca
tttactcttggagaattatgggaatgcctctggattgttatagaataccc
aagaactattgcatgagggaaaaaccctgggcatgtggtcaggaggaccc
atcccacaacctccatgtgaccttctatagctcatgaccctcctctggga
ccagcaaccccatcagtgcatgcatatggatagctttgcctgtttcctgt
gttcccaacagacgtttctactcttttactaactgactcatcttaaaaat
cagaaccctgggtcctgggagctgctcagccgttaagatcacttgccgtt
cttgcagaggagccagggtctgttgacagcacatatatggtagctaacaa
ccaagtgtaaatccagttccaggagatctgatgcctcattctggcctcta
ggggcactaggaatgcatgaggtgcacgtctgtccatgcaggcagacact
catacacataagataaaataaaatttttaaagaaaagaatgagaacatca
aacaggctgagtctgttgggcttgagattttgacatctgtgtcctcttga
atggtccatctttcagatgtcttagcatttttagctagcctaccaagcac
tgctttgtcaatttcctttgaaactcagagctttaatctatcactcaaga
tcttgagccatggttggagagacagtcccatacctttagaatattaggga
gttgttttagttttgattttctattgactagtgggagaaactcctgtgca
tagctcacttctctaagcatacaaatactcctaatttcacagtctccact
gcgagtgccatgg
gaattcctagttaatacaaagcaagagtcccccaaaagttgtttttattt
catgtaattaatttgcattttgttttatagcaatacaatttttctgctgg
ctggttagtaccccgagggcagggtttaccatctgattctcaaaaagctg
ggcagacaggagcatagtcttctctgtgactggcaccatcggcagggagg
ctcacctttgtggcagggcaagactgtgcaggggctcttccatcttagac
gctggctgaggccatttcaggtcgaagtaaaatttcatttccttggtgga
aaattccatggaaaactacccaaggaaactgaggtcaagttgtcccagag
tgaacacacgcctttcccccggcacccaagttcacaaattcactccgtgg
ctgaattatcatgaataatcgcctaggccaaaagctttgcttcattccca
ctagcctgtaacacagttatctcatttattctactctcagttccgccaca
gggttggttacctctcctcagtttcatgcgactatcttcctcatattttg
gggagaatctcattctgtgcctgattctcccagaattccagtctctcttc
tggatgtcccaccttctaatcctgcctcagctaatcggccaatcagcttt
ttattgacaggtgatgcgtccacacagagattattcctacatcccagcta
acttagcttctgttaaactgctttcgcgcacaaaacctcctccagtagct
acaaactgagataccaggatggggtttttttaccttgaaaagtctcttgc
tttaaatgcttgggactagacttgggtccagaatagctgagtataatctc
agccagctggaataaagactttcaattggctatgaactgggtgtgagtgg
ttatctctgatggcctccctgtacattttcaacacgtgagcgtttggggg
atacttcacgtgaaaaccataatagccagttacagtcaagttgtgttaga
aagaaagcagaataaactgcaagtagcgttttactggagaataatactta
cacaagcaagtgtcgtttttcattgaataaaaacttagaggattcttagt
ctagaaggagacaggtaatgtcactacaatcataaccactt
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr6_53879299_53880481
seq2: B6Ng01-084O03.b_48_1210

seq1  GAATTCTCTCCTAGAGAATTTCTCTAGGAGAGTCCCAGGCAAGTGAGAAA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTCTCCTAGAGAATTTCTCTAGGAGAGTCCCAGGCAAGTGAGAAA  50

seq1  CCCTGCCTCACAAAGCAACATCAACCTCTGGCCTCCACATAAACATACTT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCTGCCTCACAAAGCAACATCAACCTCTGGCCTCCACATAAACATACTT  100

seq1  GAACACACATCTCTATAGTGTGTGCACACAAGAACATGTGGGCATATATC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAACACACATCTCTATAGTGTGTGCACACAAGAACATGTGGGCATATATC  150

seq1  ACACACACATTTTTAATTTACAAAACCAATAGATTGTTTTCAGTGAGAAA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACACACACATTTTTAATTTACAAAACCAATAGATTGTTTTCAGTGAGAAA  200

seq1  TAAAACATTTGCTGTCTAACAAATAATGGGGCTAGATTATTCCAGACTTT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAAACATTTGCTGTCTAACAAATAATGGGGCTAGATTATTCCAGACTTT  250

seq1  TGAAATCTACTTCATAATCAAAACTTGTTTCACAGAGAATGTTCTGTGAT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAAATCTACTTCATAATCAAAACTTGTTTCACAGAGAATGTTCTGTGAT  300

seq1  TTAGATAGAGCATTGTTAGGAAGAAAATAGAAGGAACAAGAGATCAACCA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAGATAGAGCATTGTTAGGAAGAAAATAGAAGGAACAAGAGATCAACCA  350

seq1  TTTACTCTTGGAGAATTATGGGAATGCCTCTGGATTGTTATAGAATACCC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTACTCTTGGAGAATTATGGGAATGCCTCTGGATTGTTATAGAATACCC  400

seq1  AAGAACTATTGCATGAGGGAAAAACCCTGGGCATGTGGTCAGGAGGACCC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGAACTATTGCATGAGGGAAAAACCCTGGGCATGTGGTCAGGAGGACCC  450

seq1  ATCCCACAACCTCCATGTGACCTTCTATAGCTCATGACCCTCCTCTGGGA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCCCACAACCTCCATGTGACCTTCTATAGCTCATGACCCTCCTCTGGGA  500

seq1  CCAGCAACCCCATCAGTGCATGCATATGGATAGCTTTGCCTGTTTCCTGT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAGCAACCCCATCAGTGCATGCATATGGATAGCTTTGCCTGTTTCCTGT  550

seq1  GTTCCCAACAGACGTTTCTACTCTTTTACTAACTGACTCATCTTAAAAAT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTCCCAACAGACGTTTCTACTCTTTTACTAACTGACTCATCTTAAAAAT  600

seq1  CAGAACCCTGGGTCCTGGGAGCTGCTCAGCCGTTAAGATCACTTGCCGTT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGAACCCTGGGTCCTGGGAGCTGCTCAGCCGTTAAGATCACTTGCCGTT  650

seq1  CTTGCAGAGGAGCCAGGGTCTGTTGACAGCACATATATGGTAGCTAACAA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTGCAGAGGAGCCAGGGTCTGTTGACAGCACATATATGGTAGCTAACAA  700

seq1  CCAAGTGTAAATCCAGTTCCAGGAGATCTGATGCCTCATTCTGGCCTCTA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAAGTGTAAATCCAGTTCCAGGAGATCTGATGCCTCATTCTGGCCTCTA  750

seq1  GGGGCACTAGGAATGCATGAGGTGCACGTCTGTCCATGCAGGCAGACACT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGGCACTAGGAATGCATGAGGTGCACGTCTGTCCATGCAGGCAGACACT  800

seq1  CATACACATAAGATAAAATAAAATTTTTAAAGAAAAGAATGAGAACATCA  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATACACATAAGATAAAATAAAATTTTTAAAGAAAAGAATGAGAACATCA  850

seq1  AACAGGCTGAGTCTGTTGGGCTTGAGATTTTGACATCTGTGTCCTCTTGA  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACAGGCTGAGTCTGTTGGGCTTGAGATTTTGACATCTGTGTCCTCTTGA  900

seq1  ATGGTCCATCTTTCAGGATGTCTTAGCATTTTTAGCTAGCCTACCAAGCA  950
      ||||||||||||||| ||||||||||||||||||||||||||||||||||
seq2  ATGGTCCATCTTTCA-GATGTCTTAGCATTTTTAGCTAGCCTACCAAGCA  949

seq1  CTGCTTTGTCAATTTCCTTTGAAAACTCAGAGGCTTTAATCTATCACTCA  1000
      ||||||||||||||||||||| ||||||||| ||||||||||||||||||
seq2  CTGCTTTGTCAATTTCCTTTG-AAACTCAGA-GCTTTAATCTATCACTCA  997

seq1  AGATCTTGAGCCAATGGTTGGAGAGACAG-CCCATACCTTTAAGGAATAT  1049
      |||||||||||| |||||||||||||||| ||||||||||||  ||||||
seq2  AGATCTTGAGCC-ATGGTTGGAGAGACAGTCCCATACCTTTA--GAATAT  1044

seq1  TAGGGGAGGTGTTTTAGTTTTGATTTTCTATTGAATTTAGTTTGGGAGAA  1099
      || ||||| |||||||||||||||||||||||||   |||  ||||||||
seq2  TA-GGGAGTTGTTTTAGTTTTGATTTTCTATTGA--CTAG--TGGGAGAA  1089

seq1  ACTCCTGTGCCATAGTCTCACTGTCTCTAGCCATACAAAATACTCCTATT  1149
      ||||||||| ||||| |||||| ||||||  ||||| ||||||||||| |
seq2  ACTCCTGTG-CATAG-CTCACT-TCTCTAAGCATAC-AAATACTCCTAAT  1135

seq1  TTTCAACAGTTCTCCCAACCTGCGAGTGCCATGG  1183
      ||   |||| |||||    |||||||||||||||
seq2  TT--CACAG-TCTCC---ACTGCGAGTGCCATGG  1163

seq1: chr6_54048011_54049168
seq2: B6Ng01-084O03.g_68_1208 (reverse)

seq1  AAGTGGTTATGATTGTAGTGAACAATTAACTGCTTCCTCTTAGACCTAAA  50
      |||||||||||||||||||||   |||| |||  ||||  |||||   ||
seq2  AAGTGGTTATGATTGTAGTGA--CATTACCTGTCTCCTTCTAGAC--TAA  46

seq1  GAATTCCTTCCTAAAGTTTTTATTCACATTGAAAAAACGACACTTGCTTT  100
      ||| ||||  || ||||||||||||| ||   ||||||||||||||||| 
seq2  GAA-TCCT--CT-AAGTTTTTATTCA-AT--GAAAAACGACACTTGCTT-  88

seq1  GTTGTTAGTAATAATCTCCAGTTAAAACGCTACTTTGCAGTTTATTCTGC  150
        ||| |||| || ||||||| ||||||||||| ||||||||||||||||
seq2  -GTGTAAGTATTATTCTCCAG-TAAAACGCTAC-TTGCAGTTTATTCTGC  135

seq1  TTTCTTTCTAACACACCTTGACTGTTACTGGCTATTATGGTTTTCCACGT  200
      ||||||||||||||| ||||||||| |||||||||||||||||| |||||
seq2  TTTCTTTCTAACACAACTTGACTGTAACTGGCTATTATGGTTTT-CACGT  184

seq1  GAAGTATCCCCCAAACGCTCACGTGTTGAAAATGTTACAGGGAGGCCATC  250
      |||||||||||||||||||||||||||||||||| |||||||||||||||
seq2  GAAGTATCCCCCAAACGCTCACGTGTTGAAAATG-TACAGGGAGGCCATC  233

seq1  AGAGATAACCACTCACACCCAGTTCATAGCCAATTGAAAGTCTTTATTCC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGATAACCACTCACACCCAGTTCATAGCCAATTGAAAGTCTTTATTCC  283

seq1  AGCTGGCTGAGATTATACTCAGCTATTCTGGACCCAAGTCTAGTCCCAAG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCTGGCTGAGATTATACTCAGCTATTCTGGACCCAAGTCTAGTCCCAAG  333

seq1  CATTTAAAGCAAGAGACTTTTCAAGGTAAAAAAACCCCATCCTGGTATCT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATTTAAAGCAAGAGACTTTTCAAGGTAAAAAAACCCCATCCTGGTATCT  383

seq1  CAGTTTGTAGCTACTGGAGGAGGTTTTGTGCGCGAAAGCAGTTTAACAGA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGTTTGTAGCTACTGGAGGAGGTTTTGTGCGCGAAAGCAGTTTAACAGA  433

seq1  AGCTAAGTTAGCTGGGATGTAGGAATAATCTCTGTGTGGACGCATCACCT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCTAAGTTAGCTGGGATGTAGGAATAATCTCTGTGTGGACGCATCACCT  483

seq1  GTCAATAAAAAGCTGATTGGCCGATTAGCTGAGGCAGGATTAGAAGGTGG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCAATAAAAAGCTGATTGGCCGATTAGCTGAGGCAGGATTAGAAGGTGG  533

seq1  GACATCCAGAAGAGAGACTGGAATTCTGGGAGAATCAGGCACAGAATGAG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACATCCAGAAGAGAGACTGGAATTCTGGGAGAATCAGGCACAGAATGAG  583

seq1  ATTCTCCCCAAAATATGAGGAAGATAGTCGCATGAAACTGAGGAGAGGTA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTCTCCCCAAAATATGAGGAAGATAGTCGCATGAAACTGAGGAGAGGTA  633

seq1  ACCAACCCTGTGGCGGAACTGAGAGTAGAATAAATGAGATAACTGTGTTA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCAACCCTGTGGCGGAACTGAGAGTAGAATAAATGAGATAACTGTGTTA  683

seq1  CAGGCTAGTGGGAATGAAGCAAAGCTTTTGGCCTAGGCGATTATTCATGA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGGCTAGTGGGAATGAAGCAAAGCTTTTGGCCTAGGCGATTATTCATGA  733

seq1  TAATTCAGCCACGGAGTGAATTTGTGAACTTGGGTGCCGGGGGAAAGGCG  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAATTCAGCCACGGAGTGAATTTGTGAACTTGGGTGCCGGGGGAAAGGCG  783

seq1  TGTGTTCACTCTGGGACAACTTGACCTCAGTTTCCTTGGGTAGTTTTCCA  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGTTCACTCTGGGACAACTTGACCTCAGTTTCCTTGGGTAGTTTTCCA  833

seq1  TGGAATTTTCCACCAAGGAAATGAAATTTTACTTCGACCTGAAATGGCCT  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGAATTTTCCACCAAGGAAATGAAATTTTACTTCGACCTGAAATGGCCT  883

seq1  CAGCCAGCGTCTAAGATGGAAGAGCCCCTGCACAGTCTTGCCCTGCCACA  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGCCAGCGTCTAAGATGGAAGAGCCCCTGCACAGTCTTGCCCTGCCACA  933

seq1  AAGGTGAGCCTCCCTGCCGATGGTGCCAGTCACAGAGAAGACTATGCTCC  1000
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGGTGAGCCTCCCTGCCGATGGTGCCAGTCACAGAGAAGACTATGCTCC  983

seq1  TGTCTGCCCAGCTTTTTGAGAATCAGATGGTAAACCCTGCCCTCGGGGTA  1050
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTCTGCCCAGCTTTTTGAGAATCAGATGGTAAACCCTGCCCTCGGGGTA  1033

seq1  CTAACCAGCCAGCAGAAAAATTGTATTGCTATAAAACAAAATGCAAATTA  1100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAACCAGCCAGCAGAAAAATTGTATTGCTATAAAACAAAATGCAAATTA  1083

seq1  ATTACATGAAATAAAAACAACTTTTGGGGGACTCTTGCTTTGTATTAACT  1150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTACATGAAATAAAAACAACTTTTGGGGGACTCTTGCTTTGTATTAACT  1133

seq1  AGGAATTC  1158
      ||||||||
seq2  AGGAATTC  1141