BAC Information

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BAC

Clone NameB6Ng01-084O05
Chromosome6 (Build37)
Map Location 44,723,298 - 44,882,578
singlet/doubletdoublet
Overlap genenone
Upstream geneLOC546897, LOC665779
Downstream geneLOC100040210, Cntnap2
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-084O05.bB6Ng01-084O05.g
ACCDH898712DH898713
length1,1761,107
definitionDH898712|Mus musculus domesticus DNA, BAC clone: B6Ng01-084O05, 5' end.DH898713|Mus musculus domesticus DNA, BAC clone: B6Ng01-084O05, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(44,881,402 - 44,882,578)(44,723,298 - 44,724,414)
sequence
gaattccttcttatttcatagaaaatatgttcagaatttgcaattttact
gttaaggttgttcattgagtttttctaggattgctttggattagaaatat
atggatcttgataattataatatatagaacaagcttaagatggcaataga
atgcaaaattaggacttgttaaatagcccttttgggagatggagatatgg
ctcagttatcaagagcagataatgctcttggagaggactcaggattgatc
ctcaatattcacatagattctcacaaccaaccacacctaaagttggaagg
aaacaattattgtcttctgacctccacaggtaagagatgaaaacttggtg
ttcatacataaatgcagattataataatcatacacacaaagataaataaa
taaataaataaataaataaataaatctacactttaaagtgttagcttttg
atttggcttgattcattttgcactccttccataacttacactcctagtct
taatgaaacaaatataattattcctaaggtttcaatggccttgaatagaa
aatttatcaaatattgcagcattggaacatggtatgggtgagagttgcag
tactttggcttacctttaaggcatatccttataaaattacacccgtaaat
aagtataattattgcatgtaaaaaccactaagcatacatcatattttggc
cagtatgctagaaaatagataaaaaggttgatatgagttttcttcttatg
tgttaaaatttatttatataaatatgtagcttcaaggcttcttttataca
aaaatatgtttttgagtcattgtcatagtttattctgttactttggtata
taaacttttcatacattatatatatatatatattcattggtatttttaga
attttcttaatttcttttcaagctcttccattttacagttttgcttgcag
atttttaaaattgagatctgtgaagtttttttgcatcttttattttcctt
taaaataggatttatttactttaattagttttgtatggtgcaatgtgcat
atattgttacctgtgacagatatgcttgcgaacccataagaaaccattaa
atggagaattatcgaataccttgagaatggagttcaaaaatttgtatgtt
tccaagacatgaatgagatggaactg
gaattccgtcatttgcagatgacattcatgatgatcattctttcttggtt
ttgttgctctaagtttcctttactcttgtttgttaatcattgtgtcctta
agtaaaataacttttaaaaaccatgctgctgattccctaaaaatatcaat
gcccatttcaaatataccttgagggaaaatttttgagcttaacgttcaaa
gtattttagtctttatagaaagaaaaacgaagttctttaatgtaatttta
atgcattgtataatgactgcaataaatccttatgcattttctatctacaa
aaaaaggaatgacatcatttaatgttcaatgtaatttttcaattcacaag
tttaaaaatattcattttcctattcaagcaataaacttctttgttaatca
aaatagttgtgaatggactttttcttaagactgccatgaaaaatttcaat
attttaatatataaatatttttttaccttatcgagctttaaatcaaaatt
atttcttagacaatgtttaccatttttctctgttgctttatacaattgca
aaagcttgcatgaatgctagtctttccaaactaacattaaagtcactttt
atattgtggctcaaaatgtaaaatactagaattatagggaataaagaaag
tgcatggaaagagacaacattattaaaataatatttttaaaatcatggta
gattttcatattgcataataatttatctcataaatgagaaaaatagaatt
ctgccttaatttgaaaagtatactgtaagttaaaataaaaataccagaat
aacaaaccatagataaatatggaaagagtgagcagagaggaggtggagaa
aggaggaggaaaataggaaaataatattaactttttccagattcctagaa
agagggcatgaaggtaatttgcaatatgatgattcttctgggcataaagg
caggtctaacggctgtgacttatcatcaagcagtgaggtaactagtcaag
tggtggtgtaaacaatgcttgcaaattatggaattttggtatgtaatacg
gaccaggaaagattatttaaacacaggctggaccagaaaatcctttaata
ataaata
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr6_44881402_44882578
seq2: B6Ng01-084O05.b_48_1223 (reverse)

seq1  CAGTT-CATCTCATTCATGTCCTTGGGAACATTACAAATATTTGTAACTC  49
      ||||| |||||||||||||| ||||| |||| ||||||| |||| |||||
seq2  CAGTTCCATCTCATTCATGT-CTTGGAAACA-TACAAATTTTTG-AACTC  47

seq1  CATCTCCAAGGTATCTGAT-ATTCT-CATTT-ATGGTTTCTTATGGTGTC  96
      |||   ||||||||  ||| ||||| ||||| |||||||||||||| || 
seq2  CATTCTCAAGGTATTCGATAATTCTCCATTTAATGGTTTCTTATGG-GTT  96

seq1  TGCAGGCATATACTGTCACAGGTA--CATATATGCACATTGCACCATACA  144
       ||| |||||| ||||||||||||   |||||||||||||||||||||||
seq2  CGCAAGCATAT-CTGTCACAGGTAACAATATATGCACATTGCACCATACA  145

seq1  CAACTAATTAAAATTAAATAAAATCCTATTTTAAAGGAAAATAAAAGATG  194
       |||||||| ||| ||||| ||||||||||||||||||||||||||||||
seq2  AAACTAATT-AAAGTAAAT-AAATCCTATTTTAAAGGAAAATAAAAGATG  193

seq1  CAAAAAAACTTCACAGATCTCAATTTTAAAAATCTGCAAGCAAAACTGTA  244
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAAAAAACTTCACAGATCTCAATTTTAAAAATCTGCAAGCAAAACTGTA  243

seq1  AAATGGAAGAGCTTGAAAAGAAATTAAGAAAATTCTAAAAATACCAATGA  294
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATGGAAGAGCTTGAAAAGAAATTAAGAAAATTCTAAAAATACCAATGA  293

seq1  ATATATATATATATATAATGTATGAAAAGTTTATATACCAAAGTAACAGA  344
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATATATATATATATAATGTATGAAAAGTTTATATACCAAAGTAACAGA  343

seq1  ATAAACTATGACAATGACTCAAAAACATATTTTTGTATAAAAGAAGCCTT  394
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAAACTATGACAATGACTCAAAAACATATTTTTGTATAAAAGAAGCCTT  393

seq1  GAAGCTACATATTTATATAAATAAATTTTAACACATAAGAAGAAAACTCA  444
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAGCTACATATTTATATAAATAAATTTTAACACATAAGAAGAAAACTCA  443

seq1  TATCAACCTTTTTATCTATTTTCTAGCATACTGGCCAAAATATGATGTAT  494
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATCAACCTTTTTATCTATTTTCTAGCATACTGGCCAAAATATGATGTAT  493

seq1  GCTTAGTGGTTTTTACATGCAATAATTATACTTATTTACGGGTGTAATTT  544
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTTAGTGGTTTTTACATGCAATAATTATACTTATTTACGGGTGTAATTT  543

seq1  TATAAGGATATGCCTTAAAGGTAAGCCAAAGTACTGCAACTCTCACCCAT  594
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATAAGGATATGCCTTAAAGGTAAGCCAAAGTACTGCAACTCTCACCCAT  593

seq1  ACCATGTTCCAATGCTGCAATATTTGATAAATTTTCTATTCAAGGCCATT  644
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCATGTTCCAATGCTGCAATATTTGATAAATTTTCTATTCAAGGCCATT  643

seq1  GAAACCTTAGGAATAATTATATTTGTTTCATTAAGACTAGGAGTGTAAGT  694
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAACCTTAGGAATAATTATATTTGTTTCATTAAGACTAGGAGTGTAAGT  693

seq1  TATGGAAGGAGTGCAAAATGAATCAAGCCAAATCAAAAGCTAACACTTTA  744
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATGGAAGGAGTGCAAAATGAATCAAGCCAAATCAAAAGCTAACACTTTA  743

seq1  AAGTGTAGATTTATTTATTTATTTATTTATTTATTTATTTATCTTTGTGT  794
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGTGTAGATTTATTTATTTATTTATTTATTTATTTATTTATCTTTGTGT  793

seq1  GTATGATTATTATAATCTGCATTTATGTATGAACACCAAGTTTTCATCTC  844
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTATGATTATTATAATCTGCATTTATGTATGAACACCAAGTTTTCATCTC  843

seq1  TTACCTGTGGAGGTCAGAAGACAATAATTGTTTCCTTCCAACTTTAGGTG  894
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTACCTGTGGAGGTCAGAAGACAATAATTGTTTCCTTCCAACTTTAGGTG  893

seq1  TGGTTGGTTGTGAGAATCTATGTGAATATTGAGGATCAATCCTGAGTCCT  944
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGTTGGTTGTGAGAATCTATGTGAATATTGAGGATCAATCCTGAGTCCT  943

seq1  CTCCAAGAGCATTATCTGCTCTTGATAACTGAGCCATATCTCCATCTCCC  994
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCCAAGAGCATTATCTGCTCTTGATAACTGAGCCATATCTCCATCTCCC  993

seq1  AAAAGGGCTATTTAACAAGTCCTAATTTTGCATTCTATTGCCATCTTAAG  1044
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAGGGCTATTTAACAAGTCCTAATTTTGCATTCTATTGCCATCTTAAG  1043

seq1  CTTGTTCTATATATTATAATTATCAAGATCCATATATTTCTAATCCAAAG  1094
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTGTTCTATATATTATAATTATCAAGATCCATATATTTCTAATCCAAAG  1093

seq1  CAATCCTAGAAAAACTCAATGAACAACCTTAACAGTAAAATTGCAAATTC  1144
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAATCCTAGAAAAACTCAATGAACAACCTTAACAGTAAAATTGCAAATTC  1143

seq1  TGAACATATTTTCTATGAAATAAGAAGGAATTC  1177
      |||||||||||||||||||||||||||||||||
seq2  TGAACATATTTTCTATGAAATAAGAAGGAATTC  1176

seq1: chr6_44723298_44724414
seq2: B6Ng01-084O05.g_70_1176

seq1  GAATTCCGTCATTTGCAGATGACATTCATGATGATCATTCTTTCTTGGTT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCGTCATTTGCAGATGACATTCATGATGATCATTCTTTCTTGGTT  50

seq1  TTGTTGCTCTAAGTTTCCTTTACTCTTGTTTGTTAATCATTGTGTCCTTA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGTTGCTCTAAGTTTCCTTTACTCTTGTTTGTTAATCATTGTGTCCTTA  100

seq1  AGTAAAATAACTTTTAAAAACCATGCTGCTGATTCCCTAAAAATATCAAT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTAAAATAACTTTTAAAAACCATGCTGCTGATTCCCTAAAAATATCAAT  150

seq1  GCCCATTTCAAATATACCTTGAGGGAAAATTTTTGAGCTTAACGTTCAAA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCCATTTCAAATATACCTTGAGGGAAAATTTTTGAGCTTAACGTTCAAA  200

seq1  GTATTTTAGTCTTTATAGAAAGAAAAACGAAGTTCTTTAATGTAATTTTA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTATTTTAGTCTTTATAGAAAGAAAAACGAAGTTCTTTAATGTAATTTTA  250

seq1  ATGCATTGTATAATGACTGCAATAAATCCTTATGCATTTTCTATCTACAA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGCATTGTATAATGACTGCAATAAATCCTTATGCATTTTCTATCTACAA  300

seq1  AAAAAGGAATGACATCATTTAATGTTCAATGTAATTTTTCAATTCACAAG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAAGGAATGACATCATTTAATGTTCAATGTAATTTTTCAATTCACAAG  350

seq1  TTTAAAAATATTCATTTTCCTATTCAAGCAATAAACTTCTTTGTTAATCA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTAAAAATATTCATTTTCCTATTCAAGCAATAAACTTCTTTGTTAATCA  400

seq1  AAATAGTTGTGAATGGACTTTTTCTTAAGACTGCCATGAAAAATTTCAAT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATAGTTGTGAATGGACTTTTTCTTAAGACTGCCATGAAAAATTTCAAT  450

seq1  ATTTTAATATATAAATATTTTTTTACCTTATCGAGCTTTAAATCAAAATT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTTAATATATAAATATTTTTTTACCTTATCGAGCTTTAAATCAAAATT  500

seq1  ATTTCTTAGACAATGTTTACCATTTTTCTCTGTTGCTTTATACAATTGCA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTCTTAGACAATGTTTACCATTTTTCTCTGTTGCTTTATACAATTGCA  550

seq1  AAAGCTTGCATGAATGCTAGTCTTTCCAAACTAACATTAAAGTCACTTTT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGCTTGCATGAATGCTAGTCTTTCCAAACTAACATTAAAGTCACTTTT  600

seq1  ATATTGTGGCTCAAAATGTAAAATACTAGAATTATAGGGAATAAAGAAAG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATTGTGGCTCAAAATGTAAAATACTAGAATTATAGGGAATAAAGAAAG  650

seq1  TGCATGGAAAGAGACAACATTATTAAAATAATATTTTTAAAATCATGGTA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCATGGAAAGAGACAACATTATTAAAATAATATTTTTAAAATCATGGTA  700

seq1  GATTTTCATATTGCATAATAATTTATCTCATAAATGAGAAAAATAGAATT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATTTTCATATTGCATAATAATTTATCTCATAAATGAGAAAAATAGAATT  750

seq1  CTGCCTTAATTTGAAAAGTATACTGTAAGTTAAAATAAAAATACCAGAAT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGCCTTAATTTGAAAAGTATACTGTAAGTTAAAATAAAAATACCAGAAT  800

seq1  AACAAACCATAGATAAATATGGAAAGAGTGAGCAGAGAGGAGGTGGAGAA  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACAAACCATAGATAAATATGGAAAGAGTGAGCAGAGAGGAGGTGGAGAA  850

seq1  AGGAGGAGGAAAATAGGAAAATAATATTAACTTTTTCCAGATTCCTAGAA  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGAGGAGGAAAATAGGAAAATAATATTAACTTTTTCCAGATTCCTAGAA  900

seq1  AGAGGGGCATGAAGGTAAATTTGCAATATGATGATTCTTCTGGGCAATAA  950
      ||| |||||||||||| |||||||||||||||||||||||||||||   |
seq2  AGA-GGGCATGAAGGT-AATTTGCAATATGATGATTCTTCTGGGCA--TA  946

seq1  AAGGCAGGTCTAACGGCTGTGACTTATCTTCAAGGCAGTGAGGTAACTAG  1000
      |||||||||||||||||||||||||||| |||| ||||||||||||||||
seq2  AAGGCAGGTCTAACGGCTGTGACTTATCATCAA-GCAGTGAGGTAACTAG  995

seq1  TCAGGGTGGTGTGTTAAACAATGCTTGCAAAATTATGGAATTTTGGCTAT  1050
      |||  ||||||   |||||||||||||| ||||||||||||||||| |||
seq2  TCA-AGTGGTGGTGTAAACAATGCTTGC-AAATTATGGAATTTTGG-TAT  1042

seq1  GT-ATACTGACCAGGAAAGATTATATTAAACACAGGTCTGAACAAGAAAA  1099
      || |||| |||||||||||||||| ||||||||||| ||| || ||||||
seq2  GTAATACGGACCAGGAAAGATTAT-TTAAACACAGG-CTGGACCAGAAAA  1090

seq1  TCTTTTAAATAATAAATA  1117
      || ||| |||||||||||
seq2  TCCTTT-AATAATAAATA  1107