BAC Information

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BAC

Clone NameB6Ng01-085I04
Chromosome6 (Build37)
Map Location 51,528,900 - 51,647,048
singlet/doubletdoublet
Overlap geneSnx10, LOC100041820
Upstream gene4921507P07Rik, LOC213320, EG666302, EG666308, EG666310, Npvf, LOC100040877, EG625167, Nfe2l3, Hnrpa2b1, Cbx3
Downstream geneSkap2, LOC666391, Hoxa1, Hoxa2, Hoxa3, Hoxa4, Hoxa5, Hoxa6, Hoxa7, Hoxa9, Hoxa10, Hoxa11, Hoxa13, Evx1, EG666487, 1700094M24Rik, EG545841, Hibadh
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-085I04.bB6Ng01-085I04.g
ACCDH899164DH899165
length1,038882
definitionDH899164|Mus musculus domesticus DNA, BAC clone: B6Ng01-085I04, 5' end.DH899165|Mus musculus domesticus DNA, BAC clone: B6Ng01-085I04, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(51,646,000 - 51,647,048)(51,528,900 - 51,529,779)
sequence
gaattccttctccggcagagagacgtggaacagatgctcacgaggcctct
caggacctacagatgctcattcccacaagcttcacccctgtgagctctgc
cctggtctttacctccgtccagtgagtacaggtagaccatgacacgggca
catttgattcaaggtcatgtggttttataagcccttaacggggtcactga
acggtccaagctcttcctaataaccttttggctttgcctgatccccaccc
ctcaagaggcaattgtcctgggtcacgcacctcctctgcctggtgtacaa
agtcacctacgcacaaagctcatatccagaaggcagcttctcgaactctc
tctctctcagctcctcaagagttatgggcattaatctgtggtcccctgaa
gcacgctgccactctgctgactacaaccaaattcatcttcaagttggaaa
gatgccccagagggggacacgtcatgatttagtgccatccaagtactaca
gggcacacttcttaaagaaaccattgtaaattatttgtggctaattctgc
tagtggacggagggcacgctatgttcttgaagtacaagagcccagcttgt
atctaataattgttatatctcctctggaatttactgccgatgtctcaatt
ttaacaatttaaataacaagcttaaccaagtggaacaatgctcaggcagt
ctggcatttaggatgaacgcaggatcactcatgtctcagtgaattttccc
tttgacatgagcggagacacaccgagatgaaatctggtttaaagccgtag
ctatagcaagcccctgacagcctcttaggctctgcaaatcaattttagag
agtgcacacatatacttgttaactttacttgatgagactgattagataca
acacatgatttgctaatacaggtgcaagctggaaggacaccttcgagctg
ggtaatagtactgtcgtcttcatcctacttaatgactgctcatgtctatc
tttggctatgtctgctggatcagcactgtagggatctt
gaattcaccctgtcgcccaaacaggtggcaggcaatgctcctgcctcaac
ttcttcaagtccttgggttatagatgcgagccaccacactcccccgagat
ggcttgtgttttgaatctagcagacccagctgtttgtctgttttgtggaa
cccagagggaccgcctgctcattcggggtttacccagaggagaggcatca
tggcttagcctaggctggggacttaagcttgtttgtttcccaagtttgtc
tcaaggctgctacggggaaacagacgctagctggtgacagtgttgtcagc
tatacctggcaggcgctctctggaccttttcatgtccaccctgtttgccc
cactcagagctgatgtcatttcctggaggacaaccagggctgacatttgc
ccatgtctgggatgctttgtgaagagctgcaagaagtcactgctgatcca
cggacgcctggacgtggggttgaaaatgcaatggatgccctggaacattg
tgcattttagggctcgtgtgtgtttctcacgatgggatctcactgtgtta
tccgggcgggatatgaactcactcctcctgcctcccgcctgagtctgaga
tgaccgggggggcaaacatgccccacaggagttttcctaagtgatccatc
cttcgaaacaatgcttgtcgctaagagagcacccggctccctccttttag
agtcaggtcaggggagggccatgcccaccccagggctaacactgctcaat
ccagtcctcgtggctacttctgggactgagactgatgaactagatgcaag
attttgcaggccacacataactgcacacatgtcttctggcttgctctcaa
gataaagtagtgagggtgaaatcatgtgatat
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr6_51646000_51647048
seq2: B6Ng01-085I04.b_46_1083 (reverse)

seq1  AAGATCCCTACAGTGCCTAATCCAACAGACATAGCCAAAGATTAAGACAA  50
      ||||||||||||||| || ||||| |||||||||||||||||  |||| |
seq2  AAGATCCCTACAGTG-CTGATCCAGCAGACATAGCCAAAGAT--AGAC-A  46

seq1  TGAAGCAGTCCATTAAGAAGGATGAAGACGGCAGTGCCAATTACCCAGCT  100
      || |||||| ||||||| |||||||||||| ||||  | |||||||||||
seq2  TG-AGCAGT-CATTAAGTAGGATGAAGACGACAGT-ACTATTACCCAGCT  93

seq1  CGAGGGTGTACCTTCCAGCTTGCACCTCTTATTAGCATATTCATGTGTTG  150
      ||| ||||| |||||||||||||||||  |||||||| | ||||||||||
seq2  CGAAGGTGT-CCTTCCAGCTTGCACCT-GTATTAGCA-AATCATGTGTTG  140

seq1  TCTCTAATCAGTCTCCTTAAGTAAAGTTAACAAGTATATGTGTGCACTCT  200
      | ||||||||||||| | ||||||||||||||||||||||||||||||||
seq2  TATCTAATCAGTCTCATCAAGTAAAGTTAACAAGTATATGTGTGCACTCT  190

seq1  CTTGAAATTGTTTTGCAGAGCCTAAGAGGCTGTCATGGGCTTGCTAAAGC  250
      | | |||||| |||||||||||||||||||||||| |||||||||| |||
seq2  C-TAAAATTGATTTGCAGAGCCTAAGAGGCTGTCAGGGGCTTGCTATAGC  239

seq1  TACCGCTTTAAACCAGATTTCATCTCGGTGTGTCACCGCTCATGTCAAAG  300
      ||| |||||||||||||||||||||||||||||| |||||||||||||||
seq2  TACGGCTTTAAACCAGATTTCATCTCGGTGTGTCTCCGCTCATGTCAAAG  289

seq1  TGAAAATTCACTGAGACATGAGTTGTCCTGCCTTCATCCTGAGTGCCAGA  350
       ||||||||||||||||||||||  |||||| |||||||| | |||||||
seq2  GGAAAATTCACTGAGACATGAGTGATCCTGCGTTCATCCTAAATGCCAGA  339

seq1  CTGCCTGAGCCTTGTTCCACTTGGTTAAGCTTGTTATTTAAATTGTTAAA  400
      |||||||||| |||||||||||||||||||||||||||||||||||||||
seq2  CTGCCTGAGCATTGTTCCACTTGGTTAAGCTTGTTATTTAAATTGTTAAA  389

seq1  ATTGAGACATCGGCAGTAAATTCCAGAGGAGATATAACAATTATTAGATA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTGAGACATCGGCAGTAAATTCCAGAGGAGATATAACAATTATTAGATA  439

seq1  CAAGCTGGGCTCTTGTACTTCAAGAACATAGCGTGCCCTCCGTCCACTAG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAGCTGGGCTCTTGTACTTCAAGAACATAGCGTGCCCTCCGTCCACTAG  489

seq1  CAGAATTAGCCACAAATAATTTACAATGGTTTCTTTAAGAAGTGTGCCCT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGAATTAGCCACAAATAATTTACAATGGTTTCTTTAAGAAGTGTGCCCT  539

seq1  GTAGTACTTGGATGGCATTAAATCATGACGTGTCCCCCACTGGGGCATCT  600
      ||||||||||||||||| |||||||||||||||||||| |||||||||||
seq2  GTAGTACTTGGATGGCACTAAATCATGACGTGTCCCCCTCTGGGGCATCT  589

seq1  TTCCAACTTGAAGATGAATTTGGTTGTAGTCAGCAGAGTGGCAGCGTGCT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCCAACTTGAAGATGAATTTGGTTGTAGTCAGCAGAGTGGCAGCGTGCT  639

seq1  TCAGGGGACCACAGATTAATGCCCATAACTCTTGAGGAGCTGAGAGAGAG  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAGGGGACCACAGATTAATGCCCATAACTCTTGAGGAGCTGAGAGAGAG  689

seq1  AGAGTTCGAGAAGCTGCCTTCTGGCTATGAGCTTTGTGCGTAGGTGACTT  750
      |||||||||||||||||||||||| |||||||||||||||||||||||||
seq2  AGAGTTCGAGAAGCTGCCTTCTGGATATGAGCTTTGTGCGTAGGTGACTT  739

seq1  TGTACACCAGGCAGAGGATGTGTGTGACCCAGGACAATTGCCTCTTGAGG  800
      |||||||||||||||||| ||| |||||||||||||||||||||||||||
seq2  TGTACACCAGGCAGAGGAGGTGCGTGACCCAGGACAATTGCCTCTTGAGG  789

seq1  GGTGGGGATCAGGCAAAGCCAAAAGGTTCTTAGGAAGAGCTTGGACCGTT  850
      |||||||||||||||||||||||||||| |||||||||||||||||||||
seq2  GGTGGGGATCAGGCAAAGCCAAAAGGTTATTAGGAAGAGCTTGGACCGTT  839

seq1  CAGTGACCCCGTTAAGGGCTTATAAAACCACATGACCTTGAATCAAATGT  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGTGACCCCGTTAAGGGCTTATAAAACCACATGACCTTGAATCAAATGT  889

seq1  GCCCGTGTCATGGTCTACCTGTACTCACTGGACGGAGGTAAAGACCAGGG  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCCGTGTCATGGTCTACCTGTACTCACTGGACGGAGGTAAAGACCAGGG  939

seq1  CAGAGCTCACAGGGGTGAAGCTTGTGGGAATGAGCATCTGTAGGTCCTGA  1000
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGAGCTCACAGGGGTGAAGCTTGTGGGAATGAGCATCTGTAGGTCCTGA  989

seq1  GAGGCCTCGTGAGCATCTGTTCCACGTCTCTCTGCCGGAGAAGGAATTC  1049
      |||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGGCCTCGTGAGCATCTGTTCCACGTCTCTCTGCCGGAGAAGGAATTC  1038

seq1: chr6_51528900_51529779
seq2: B6Ng01-085I04.g_67_948

seq1  GAATTCACCCTGTCGCCCAAACAGGTGGCAGGCAATGCTCCTGCCTCAGC  50
      |||||||||||||||||||||||||||||||||||||||||||||||| |
seq2  GAATTCACCCTGTCGCCCAAACAGGTGGCAGGCAATGCTCCTGCCTCAAC  50

seq1  TTCTTCAAGTCCTTGGGTTATAGATGCGAGCCACCACACTCAGCCGAGAT  100
      |||||||||||||||||||||||||||||||||||||||||  |||||||
seq2  TTCTTCAAGTCCTTGGGTTATAGATGCGAGCCACCACACTCCCCCGAGAT  100

seq1  GGCTTGTGTTTTGAATCTAGCAGACCCAGCTGTTTGTCAGCTTTGTGGTA  150
      |||||||||||||||||||||||||||||||||||||| | ||||||| |
seq2  GGCTTGTGTTTTGAATCTAGCAGACCCAGCTGTTTGTCTGTTTTGTGGAA  150

seq1  CCCAGAGGGACCGCCTGCTCATTCGGGGTTTACCCAGAGGAGAGGCATCG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||| 
seq2  CCCAGAGGGACCGCCTGCTCATTCGGGGTTTACCCAGAGGAGAGGCATCA  200

seq1  TGGCTTAGCCTAGGCTGGGGACTTAGGCTTGTTTGTTTCCCAAGTTTGTC  250
      ||||||||||||||||||||||||| ||||||||||||||||||||||||
seq2  TGGCTTAGCCTAGGCTGGGGACTTAAGCTTGTTTGTTTCCCAAGTTTGTC  250

seq1  TCAGGGCTGCTACGGGGAAACAGACGCTAGCTGGTGACAGTGTTGTCAGC  300
      ||| ||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAAGGCTGCTACGGGGAAACAGACGCTAGCTGGTGACAGTGTTGTCAGC  300

seq1  TATACCTGTCAGGTGCTCTCTGGTCCTTTTCATGTCCACCCTGTTTGCCC  350
      |||||||| |||| ||||||||| ||||||||||||||||||||||||||
seq2  TATACCTGGCAGGCGCTCTCTGGACCTTTTCATGTCCACCCTGTTTGCCC  350

seq1  CACTCAGAGCTGATGTCATTTCCTGGAGGAGAACCAGGGCTGACATTTGC  400
      |||||||||||||||||||||||||||||| |||||||||||||||||||
seq2  CACTCAGAGCTGATGTCATTTCCTGGAGGACAACCAGGGCTGACATTTGC  400

seq1  AGATGTCTGGGATGCTTTGTGAAGAGCTGCAGGAAGTCAGTGCTGATCCA  450
        ||||||||||||||||||||||||||||| ||||||| ||||||||||
seq2  CCATGTCTGGGATGCTTTGTGAAGAGCTGCAAGAAGTCACTGCTGATCCA  450

seq1  CGGACGCCTGGACGTGGGGTTAAAAATGCAGTGGATGCGCTGGAGCATTG  500
      ||||||||||||||||||||| |||||||| ||||||| ||||| |||||
seq2  CGGACGCCTGGACGTGGGGTTGAAAATGCAATGGATGCCCTGGAACATTG  500

seq1  TGCATTTTAGGGCTCGTGTGTGTTTCTCACGATGGGATCTCACTGTGTAA  550
      |||||||||||||||||||||||||||||||||||||||||||||||| |
seq2  TGCATTTTAGGGCTCGTGTGTGTTTCTCACGATGGGATCTCACTGTGTTA  550

seq1  TCCAGGCTGGATTTGAACTCAGTCCTCCTGCCTCCTGCCTGAGTCTGAGA  600
      ||| ||| |||| |||||||| ||||||||||||| ||||||||||||||
seq2  TCCGGGCGGGATATGAACTCACTCCTCCTGCCTCCCGCCTGAGTCTGAGA  600

seq1  TGACAGGGTGGGCAAACATG-CCCACTGGAGTTTTCCTTAGTGATCCATC  649
      |||| ||| ||||||||||| ||||| ||||||||||| |||||||||||
seq2  TGACCGGGGGGGCAAACATGCCCCACAGGAGTTTTCCTAAGTGATCCATC  650

seq1  CTTGGAAACAATGCTTGTCGTTAGGAGAGCACAGGCCTCCCTCCTTCAGG  699
      ||| |||||||||||||||| || ||||||||  | ||||||||||   |
seq2  CTTCGAAACAATGCTTGTCGCTAAGAGAGCACCCGGCTCCCTCCTTTTAG  700

seq1  AGTCTGGTCAGGGGAGGGCCATGCCCA-CCCAGGGCTAACACTGCTCATT  748
      |||| |||||||||||||||||||||| |||||||||||||||||||| |
seq2  AGTCAGGTCAGGGGAGGGCCATGCCCACCCCAGGGCTAACACTGCTCAAT  750

seq1  CCTGTCGTCATGGCTTCTTCTGGGACTGAGACTGATAAGCTACATGAAAG  798
      || ||| || ||||| |||||||||||||||||||| | ||| ||| |||
seq2  CCAGTCCTCGTGGCTACTTCTGGGACTGAGACTGATGAACTAGATGCAAG  800

seq1  ATTTTGCAGTGCACACATAAATGCACACATGTCTCATGGCTTGCACACTA  848
      |||||||||  ||||||||| |||||||||||||  |||||||| | | |
seq2  ATTTTGCAGGCCACACATAACTGCACACATGTCTTCTGGCTTGCTCTCAA  850

seq1  CTTAGAGTAGTGAGGGTAACATCATGAGATAT  880
        || |||||||||||| | |||||| |||||
seq2  GATAAAGTAGTGAGGGTGAAATCATGTGATAT  882