BAC Information

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BAC

Clone NameB6Ng01-086A16
Chromosome6 (Build37)
Map Location 79,773,256 - 79,883,522
singlet/doubletdoublet
Overlap geneLOC100043392
Upstream geneLOC384440, LOC621815
Downstream geneLrrtm4, LOC100043390
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-086A16.bB6Ng01-086A16.g
ACCDH899546DH899547
length882985
definitionDH899546|Mus musculus domesticus DNA, BAC clone: B6Ng01-086A16, 5' end.DH899547|Mus musculus domesticus DNA, BAC clone: B6Ng01-086A16, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(79,882,642 - 79,883,522)(79,773,256 - 79,774,146)
sequence
gaattctttctctccagttgatttgttcattgttcatgcattagcaaatc
tatggtaaatactgtaatcaaattcaaggggttgcctctccttgagtgca
aagtcaacataaacagccaagatattgaaaaaaggagaaagacttattac
tcaaagtacaaagagaaaactgggggtgatttgcaatgcaagactctgta
aaagctgggtaatggatggaaggtaggggatttattaggaagcctataca
gggacaacatgggggagagtacagtcctccttcctaatatgtccagtttg
caccagtctgttttagttgaaaattaagaaaaagattactaaaagtattc
tacttttagttatgtatatgtatgttctgtgtgtgagagtatacacatac
gagatcagatgatcatggaagtcaaacaagtatgctatatcccttgcatc
tggagtttctggaggttgtgggttgcccaactttcgtgctgggaaccaaa
gttcacttttgtgcaaaggaagtgcataattttcatttccatatcatacc
ttcagcccagaaaaggatctatgcaaagatgcccatcttgattcctcccc
tgaactgacaactaaaaagtaatctctgatatttttagggtattattaag
tattttaaattcttaaggaaatcttggttttgaaatttaaaacatttatt
tatttctgtatttaattatttatttaaaacatttatttatttatttattt
atttatttatataaatgtacacacgggtatcagtttttgttgaagagcaa
acagttttcttaactgaggaggcatattttcaagtctggttgttttggtt
tgatttggttgggttttggttttggtttgggt
gaattcaaagttggctcaatcatacaaaataataaataattcctttattt
ggcatattactactgaaaattctctttctaccgagctgactatatagaag
acaaattcaaaaatatctttcttcagagggatgagattttaaataaaggg
agtaaataaaatgatactgagaataatttttaatttataaagtagactaa
agtatgacaattctctttaaacagaataaaatatgagggggaggaaaatc
tggtcatcatgatttatctctgaaatcacagaagtatggaaacagagaat
tgccactgtcattctgggctacatagtcataggctagcctatgttataaa
gttaaattctatccaagaaaaataataaagatgttgatatatggaggcat
gttgacttggatctttggattccaggatcccaggataacaggagcttggt
cacatcaggatctcagagtctcagaggaagcttgactgccaagaactctg
acatgttgggagccatgagcaattgccatcatgagcctccactgtgccta
actggtaaacaagtaatgtgcgcaggtgcaagagtaaatttgtgccaagt
cactgcccatcccggggcgtagtagtggggtgatgagtgagcagctaatc
aggagctgacacgtcacatggaggggtatataagcagcatcattttcctt
gtttgttgttgttcttctttcgcctatgcaatcaatgctctcccaataaa
cttgtgcagaaggatcctgttgcagcgttgttcttcctggccagttgagc
gcatgcaagaaatggtgccgaaacccgggacgagaaacatcttcaggcac
gagtgaagaccccctgctacagggaggattcagaactgcatcgcagggaa
ggagtggttgataaaggttcccgtaaaacagactgttgagaaagatctgg
catggtttcagaactcttcagctggggaacggtgg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr6_79882642_79883522
seq2: B6Ng01-086A16.b_44_925 (reverse)

seq1  ACCAAAACCAAAACCAAAA-CCAACCAAATCAAACCAAAACAACCAGACT  49
      ||| ||||||||||||||| ||||||||||||||||||||||||||||||
seq2  ACCCAAACCAAAACCAAAACCCAACCAAATCAAACCAAAACAACCAGACT  50

seq1  TGAAAATATGCCTCCTCAGTTAAGAAAACTGTTTGCTCTTCAACAAAAAC  99
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAAAATATGCCTCCTCAGTTAAGAAAACTGTTTGCTCTTCAACAAAAAC  100

seq1  TGATACCCGTGTGTACATTTATATAAATAAATAAATAAATAAATAAATAA  149
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGATACCCGTGTGTACATTTATATAAATAAATAAATAAATAAATAAATAA  150

seq1  ATGTTTTAAATAAATAATTAAATACAGAAATAAATAAATGTTTTAAATTT  199
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGTTTTAAATAAATAATTAAATACAGAAATAAATAAATGTTTTAAATTT  200

seq1  CAAAACCAAGATTTCCTTAAGAATTTAAAATACTTAATAATACCCTAAAA  249
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAAACCAAGATTTCCTTAAGAATTTAAAATACTTAATAATACCCTAAAA  250

seq1  ATATCAGAGATTACTTTTTAGTTGTCAGTTCAGGGGAGGAATCAAGATGG  299
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATCAGAGATTACTTTTTAGTTGTCAGTTCAGGGGAGGAATCAAGATGG  300

seq1  GCATCTTTGCATAGATCCTTTTCTGGGCTGAAGGTATGATATGGAAATGA  349
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCATCTTTGCATAGATCCTTTTCTGGGCTGAAGGTATGATATGGAAATGA  350

seq1  AAATTATGCACTTCCTTTGCACAAAAGTGAACTTTGGTTCCCAGCACGAA  399
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATTATGCACTTCCTTTGCACAAAAGTGAACTTTGGTTCCCAGCACGAA  400

seq1  AGTTGGGCAACCCACAACCTCCAGAAACTCCAGATGCAAGGGATATAGCA  449
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTTGGGCAACCCACAACCTCCAGAAACTCCAGATGCAAGGGATATAGCA  450

seq1  TACTTGTTTGACTTCCATGATCATCTGATCTCGTATGTGTATACTCTCAC  499
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACTTGTTTGACTTCCATGATCATCTGATCTCGTATGTGTATACTCTCAC  500

seq1  ACACAGAACATACATATACATAACTAAAAGTAGAATACTTTTAGTAATCT  549
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACACAGAACATACATATACATAACTAAAAGTAGAATACTTTTAGTAATCT  550

seq1  TTTTCTTAATTTTCAACTAAAACAGACTGGTGCAAACTGGACATATTAGG  599
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTCTTAATTTTCAACTAAAACAGACTGGTGCAAACTGGACATATTAGG  600

seq1  AAGGAGGACTGTACTCTCCCCCATGTTGTCCCTGTATAGGCTTCCTAATA  649
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGGAGGACTGTACTCTCCCCCATGTTGTCCCTGTATAGGCTTCCTAATA  650

seq1  AATCCCCTACCTTCCATCCATTACCCAGCTTTTACAGAGTCTTGCATTGC  699
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATCCCCTACCTTCCATCCATTACCCAGCTTTTACAGAGTCTTGCATTGC  700

seq1  AAATCACCCCCAGTTTTCTCTTTGTACTTTGAGTAATAAGTCTTTCTCCT  749
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATCACCCCCAGTTTTCTCTTTGTACTTTGAGTAATAAGTCTTTCTCCT  750

seq1  TTTTTCAATATCTTGGCTGTTTATGTTGACTTTGCACTCAAGGAGAGGCA  799
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTTCAATATCTTGGCTGTTTATGTTGACTTTGCACTCAAGGAGAGGCA  800

seq1  ACCCCTTGAATTTGATTACAGTATTTACCATAGATTTGCTAATGCATGAA  849
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCCCTTGAATTTGATTACAGTATTTACCATAGATTTGCTAATGCATGAA  850

seq1  CAATGAACAAATCAACTGGAGAGAAAGAATTC  881
      ||||||||||||||||||||||||||||||||
seq2  CAATGAACAAATCAACTGGAGAGAAAGAATTC  882

seq1: chr6_79773256_79774146
seq2: B6Ng01-086A16.g_67_957

seq1  GAATTCAAAGTTGGCTCAATCATACAAAATAATAAATAATTCCTTTATTT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCAAAGTTGGCTCAATCATACAAAATAATAAATAATTCCTTTATTT  50

seq1  GGCATATTACTACTGAAAATTCTCTTTCTACCGAGCTGACTATATAGAAG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCATATTACTACTGAAAATTCTCTTTCTACCGAGCTGACTATATAGAAG  100

seq1  ACAAATTCAAAAATATCTTTCTTCAGAGGGATGAGATTTTAAATAAAGGG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAAATTCAAAAATATCTTTCTTCAGAGGGATGAGATTTTAAATAAAGGG  150

seq1  AGTAAATAAAATGATACTGAGAATAATTTTTAATTTATAAAGTAGACTAA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTAAATAAAATGATACTGAGAATAATTTTTAATTTATAAAGTAGACTAA  200

seq1  AGTATGACAATTCTCTTTAAACAGAATAAAATATGAGGGGGAGGAAAATC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTATGACAATTCTCTTTAAACAGAATAAAATATGAGGGGGAGGAAAATC  250

seq1  TGGTCATCATGATTTATCTCTGAAATCACAGAAGTATGGAAACAGAGAAT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGTCATCATGATTTATCTCTGAAATCACAGAAGTATGGAAACAGAGAAT  300

seq1  TGCCACTGTCATTCTGGGCTACATAGTCATAGGCTAGCCTATGTTATAAA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCCACTGTCATTCTGGGCTACATAGTCATAGGCTAGCCTATGTTATAAA  350

seq1  GTTAAATTCTATCCAAGAAAAATAATAAAGATGTTGATATATGGAGGCAT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTAAATTCTATCCAAGAAAAATAATAAAGATGTTGATATATGGAGGCAT  400

seq1  GTTGACTTGGATCTTTGGATTCCAGGATCCCAGGATAACAGGAGCTTGGT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTGACTTGGATCTTTGGATTCCAGGATCCCAGGATAACAGGAGCTTGGT  450

seq1  CACATCAGGATCTCAGAGTCTCAGAGGAAGCTTGACTGCCAAGAACTCTG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACATCAGGATCTCAGAGTCTCAGAGGAAGCTTGACTGCCAAGAACTCTG  500

seq1  ACATGTTGGGAGCCATGAGCAATTGCCATCATGAGCCTCCACTGTGCCTA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACATGTTGGGAGCCATGAGCAATTGCCATCATGAGCCTCCACTGTGCCTA  550

seq1  ACTGGTAAACAAGTAATGTGCGCAGGTGCAAGAGTAAATTTGTGCCAAGT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTGGTAAACAAGTAATGTGCGCAGGTGCAAGAGTAAATTTGTGCCAAGT  600

seq1  CACTGCCCATCCCGGGGCGTAGTAGTGGGGTGATGAGTGAGCAGCTAATC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACTGCCCATCCCGGGGCGTAGTAGTGGGGTGATGAGTGAGCAGCTAATC  650

seq1  AGGAGCTGACACGTCACATGGAGGGGTATATAAGCAGCATCATTTTCCTT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGAGCTGACACGTCACATGGAGGGGTATATAAGCAGCATCATTTTCCTT  700

seq1  GTTTGTTGTTGTTCTTCTTTCGCCTATGCAATCAATGCTCTCCCAATAAA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTTGTTGTTGTTCTTCTTTCGCCTATGCAATCAATGCTCTCCCAATAAA  750

seq1  CTTGTGCAGAAGGATCCTGTTGCAGCGTTGTTCTTCCTGGCCAGTTGAGC  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTGTGCAGAAGGATCCTGTTGCAGCGTTGTTCTTCCTGGCCAGTTGAGC  800

seq1  GCATGCAAGAAATGGTGCCGAAACCCGGGACGAGAAACATCTTCAGGCAC  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCATGCAAGAAATGGTGCCGAAACCCGGGACGAGAAACATCTTCAGGCAC  850

seq1  GAGTGAAGACCCCCTGCTACAGGGAGGATTCAGAACTGCAT  891
      |||||||||||||||||||||||||||||||||||||||||
seq2  GAGTGAAGACCCCCTGCTACAGGGAGGATTCAGAACTGCAT  891