BAC Information

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BAC

Clone NameB6Ng01-086E13
Chromosome6 (Build37)16 (Build37)
Map Location 18,835,442 - 18,835,96875,815,391 - 75,816,180
singlet/doubletsingletsinglet
Overlap genenone
Upstream geneSt7, Wnt2, Asz1, LOC386426, LOC636450, LOC100040751, Cftr, Cttnbp2, EG545829, Lsm8, Ankrd7
Downstream geneLOC626180, Eif3s6-ps4
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-086E13.bB6Ng01-086E13.g
ACCDH899725DH899726
length1,0531,131
definitionDH899725|Mus musculus domesticus DNA, BAC clone: B6Ng01-086E13, 5' end.DH899726|Mus musculus domesticus DNA, BAC clone: B6Ng01-086E13, 3' end.
singlet/doubletsingletsinglet
BLAST hituniqueunique
Map location.(18,835,442 - 18,835,968)(75,815,391 - 75,816,180)
sequence
gaattctttgttcagttctgagccccattttttaatggggttgtttgatt
ttctgaagtccaccttcttgagttctttatatatgttggatattagtccc
ctatctgatttaggataggtaaagatcctttcccaatctgttggtggtct
ctttgtcttattgacagtgtcttttgccttgcagaaactttggagtttca
ttaggtcccatttgtcaattctcaatcttacagcacaagccattgctgtt
cggttcaggaatttttcccctgtgcccatatcttcaaggcttttccccac
tttctcctctataagtttcagtgtctctggttttatgtgaagttctttga
tccatttagatttgaccttagtacaaggagataagtatggatcgattcgc
attcttctacattataacaaccagttgtgccagcaccatttgttgaaaat
gctgtctttcttccactggatggttttagctcccttgtcgaagatcaagt
gaccataggtgtgtgggttcatttctgggtcttcaattctattccattgg
tctacttgtctgtctctataccagtaccatgcagtttttaccacaattgc
tctgtagtaaagctttaggtcaggcatggtgattccaccagaggttcttt
tatccttgagaagagtttttgctatcctaggttttttgttattccagatg
aatttgcaaattgctccttctaattcgttgaagaattgagttggaatttt
gatagggattgcattgaatctgtagattgcttttggcaagatagccattt
ttacaatattgatcctgcaatccatgagcatgggagatctttccatcttc
tgagatcttctttatttctttcttcagagacttgaagtttttatcataca
gatcttcacttcttagttagagtcacgccgagatattttatattatttgt
gactatgagaaggtgttgtttccctaatttctttctcagcctgtttattc
tttgtgtagagaaagggcattgacctgtttgagttaatttatatcagcta
ctt
gaattcctgggggtgtatttgcaagattgttaaccaacaactggatttga
ttggactgaggcctgctctacaggaggtaattcatgcctaatgccataaa
cttagtaaaaaacaaacaaaaacccaacattattagagaaatcataaaaa
tgaatgtatggatgcttttctaaatggtaatattgtgaaactgtcttcta
aatattcctatttctgtccataaatttgtgttgctccaaaacttggtaag
ataggccttttattgctgttggaaatgatcaatgcagaaaataaattgca
gttcaaaatgatgagattatgtgactgtgaatgttcagcagtagatcgga
catctctgtcaactctcccctccagggctcagggaacatcacagaagaca
ggacagcaagactttaagagccatcagatggggaagaatattgtgaaata
ctgtcctttggactcacatggctgttgcacatgtgaaatcaagagtacta
aatacattcccaaaatacatttaaaaatcaagctaagcagaatccagaca
tgggtttggaaggatactctgaggtttcacccctaatggaaaactgtcag
tcagtggttgctagaggcctctggtaggtgatagatttcccatacctcag
tggatatacctcctctcaaatgtatctgggcagtagtaattagacgtatg
agttaaaaataaggaaaggagggtatgaagtttggaggaacgtatatagg
gactagaggacactggaaagtggggcctgaggagtagatgaaactgagat
atcttttagacatgtgcaacacttttaaagaataaacatacctaaactgt
ttaagagctctcaagggtgaaagatgtgtttgcagaacacagaacccaac
aagtagacagaagttattatgatgatactgaactattgactacccctggg
attttccataggggcatattgcaaatgaagaaccaattaattgttgcaga
aactttaagtatgaattctgttgagtaccaggcagaaagatgagtatcca
ccaagcccaattaacaggtctataaatgactctaggtcctctctgggtca
ggatcaacgctgctgtgttttgagtctgctg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr6_18835442_18835968
seq2: B6Ng01-086E13.b_48_575 (reverse)

seq1  CCAGAGATGAACCCACACACCTATGGTCACTTGATCTTCGACAAGGGAGC  50
      ||||| ||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAGAAATGAACCCACACACCTATGGTCACTTGATCTTCGACAAGGGAGC  50

seq1  TAAAACCATCCAGTGGAAGAAAGACAGCATTTTCAACAATTGGTGCTGGC  100
      ||||||||||||||||||||||||||||||||||||||| ||||||||||
seq2  TAAAACCATCCAGTGGAAGAAAGACAGCATTTTCAACAAATGGTGCTGGC  100

seq1  ACAACTGGTTGTTATCTTGTAGAAGAATGTGAATCGATCCATACTTATCT  150
      |||||||||||||||  |||||||||||| ||||||||||||||||||||
seq2  ACAACTGGTTGTTATAATGTAGAAGAATGCGAATCGATCCATACTTATCT  150

seq1  CCATGTACTAAGGTCAAATCTAAGTGGATCAAGGAACTTCACATAAAACC  200
      || |||||||||||||||||||| |||||||| |||||||||||||||||
seq2  CCTTGTACTAAGGTCAAATCTAAATGGATCAAAGAACTTCACATAAAACC  200

seq1  AGAGACACTGAAACTTATAGAGGAGAAAGTGGGGAAAAGCCTTGAAGATA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGACACTGAAACTTATAGAGGAGAAAGTGGGGAAAAGCCTTGAAGATA  250

seq1  TGGGCAGAGGGGAAAAGTTCCTGAACAGAACAGCAATGGC-TGTGCTGTG  299
      |||||| ||||||||| ||||||||| ||||||||||||| |||||||| 
seq2  TGGGCACAGGGGAAAAATTCCTGAACCGAACAGCAATGGCTTGTGCTGTA  300

seq1  AGGTAGAGAATCGACAAATGGGACCTAATGAAACTCCAAAGTTTCTGCAA  349
      || | |||||| ||||||||||||||||||||||||||||||||||||||
seq2  AGATTGAGAATTGACAAATGGGACCTAATGAAACTCCAAAGTTTCTGCAA  350

seq1  GGCAAAAGACACCGTCAATAAGACAAAAAGACCACCAACAGATTGGGAAA  399
      |||||||||||| |||||||||||||| ||||||||||||||||||||||
seq2  GGCAAAAGACACTGTCAATAAGACAAAGAGACCACCAACAGATTGGGAAA  400

seq1  GGATCTTTACCTATCCTAAATCAGATAGGGGACTAATATCCAACATATAT  449
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGATCTTTACCTATCCTAAATCAGATAGGGGACTAATATCCAACATATAT  450

seq1  AAAGAACTCAAGAAGGTGGACTTCAGAAAATCAAATAACCCCATTAATAA  499
      ||||||||||||||||||||||||||||||||||| ||||||||||| ||
seq2  AAAGAACTCAAGAAGGTGGACTTCAGAAAATCAAACAACCCCATTAAAAA  500

seq1  ATGGGGCTCAGAACTGAACAAAGAATTC  527
      ||||||||||||||||||||||||||||
seq2  ATGGGGCTCAGAACTGAACAAAGAATTC  528

seq1: chr16_75815391_75816180
seq2: B6Ng01-086E13.g_407_1198

seq1  AGTAGATCGGACATCTCTGTCAACTCTCCCCTCCAGGGCTCAGGGAACAT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTAGATCGGACATCTCTGTCAACTCTCCCCTCCAGGGCTCAGGGAACAT  50

seq1  CACAGAAGACAGGACAGCAAGACTTTAAGAGCCATCAGATGGGGAAGAAT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACAGAAGACAGGACAGCAAGACTTTAAGAGCCATCAGATGGGGAAGAAT  100

seq1  ATTGTGAAATACTGTCCTTTGGACTCACATGGCTGTTGCACATGTGAAAT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTGTGAAATACTGTCCTTTGGACTCACATGGCTGTTGCACATGTGAAAT  150

seq1  CAAGAGTACTAAATACATTCCCAAAATACATTTAAAAATCAAGCTAAGCA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAGAGTACTAAATACATTCCCAAAATACATTTAAAAATCAAGCTAAGCA  200

seq1  GAATCCAGACATGGGTTTGGAAGGATACTCTGAGGTTTCACCCCTAATGG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATCCAGACATGGGTTTGGAAGGATACTCTGAGGTTTCACCCCTAATGG  250

seq1  AAAACTGTCAGTCAGTGGTTGCTAGAGGCCTCTGGTAGGTGATAGATTTC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAACTGTCAGTCAGTGGTTGCTAGAGGCCTCTGGTAGGTGATAGATTTC  300

seq1  CCATACCTCAGTGGATATACCTCCTCTCAAATGTATCTGGGCAGTAGTAA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCATACCTCAGTGGATATACCTCCTCTCAAATGTATCTGGGCAGTAGTAA  350

seq1  TTAGACGTATGAGTTAAAAATAAGGAAAGGAGGGTATGAAGTTTGGAGGA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAGACGTATGAGTTAAAAATAAGGAAAGGAGGGTATGAAGTTTGGAGGA  400

seq1  ACGTATATAGGGACTAGAGGACACTGGAAAGTGGGGCCTGAGGAGTAGAT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACGTATATAGGGACTAGAGGACACTGGAAAGTGGGGCCTGAGGAGTAGAT  450

seq1  GAAACTGAGATATCTTTTAGACATGTGCAACACTTTTAAAGAATAAACAT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAACTGAGATATCTTTTAGACATGTGCAACACTTTTAAAGAATAAACAT  500

seq1  ACCTAAACTGTTTAAGAGCTCTCAAGGGTG-AAGATGTGTTTGCAGAACA  549
      |||||||||||||||||||||||||||||| |||||||||||||||||||
seq2  ACCTAAACTGTTTAAGAGCTCTCAAGGGTGAAAGATGTGTTTGCAGAACA  550

seq1  CAGAACCCAACAAGTAGACAGAAGTTATTATGATGATACTGAACTATTGA  599
      ||||||||||||||||||||||||||||||||||||||||||||||||| 
seq2  CAGAACCCAACAAGTAGACAGAAGTTATTATGATGATACTGAACTATTG-  599

seq1  ACTACCCCTGGGATTTTTCCATAGGGGCATATTGCAAATG-AGAACCAAT  648
      ||||||||||||| |||||||||||||||||||||||||| |||||||||
seq2  ACTACCCCTGGGA-TTTTCCATAGGGGCATATTGCAAATGAAGAACCAAT  648

seq1  TAATTGTTGCAGAAACTTTAAGTATGAA-TCTG-TGAGTACCAGGCAGAT  696
      |||||||||||||||||||||||||||| |||| ||||||||||||||| 
seq2  TAATTGTTGCAGAAACTTTAAGTATGAATTCTGTTGAGTACCAGGCAGAA  698

seq1  AGATGAGTAATTCCA-CAAGCCCA--TTACAGGTCTATAAATGACTTCTA  743
      |||||||||  |||| ||||||||  | ||||||||||||||||| ||||
seq2  AGATGAGTA--TCCACCAAGCCCAATTAACAGGTCTATAAATGAC-TCTA  745

seq1  GGTCCTCTCT-GGTCAGGGTCAACGCTGCTGTGTTTGTAGTTCTGCTG  790
      |||||||||| ||||||| |||||||||||||||||  || |||||||
seq2  GGTCCTCTCTGGGTCAGGATCAACGCTGCTGTGTTTTGAG-TCTGCTG  792