BAC Information

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BAC

Clone NameB6Ng01-086H09
Chromosome6 (Build37)
Map Location 111,522,947 - 111,551,245
singlet/doubletdoublet
Overlap genenone
Upstream geneGrm7
Downstream gene1700054K19Rik, Lmcd1, D630042P16Rik, LOC619975, Cav3, Oxtr, LOC434076
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-086H09.bB6Ng01-086H09.g
ACCDH899852DH899853
length1,1401,203
definitionDH899852|Mus musculus domesticus DNA, BAC clone: B6Ng01-086H09, 5' end.DH899853|Mus musculus domesticus DNA, BAC clone: B6Ng01-086H09, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(111,550,092 - 111,551,245)(111,522,947 - 111,524,163)
sequence
gaattcattgcatgctgtgagtcctctctacatctcaccatggcaggggt
tcctgatgactttgcctactatcatctgtttcttccaatcatgactactt
ctaatgaatgaacccattctttgttgatgcttgaaaagcagcacctgtta
gggctgtcttcagacaaacaagtggtgagacctgtattgattctcttgtg
ggataatctagaagcatgattttggctctcagacttctctgtgaaattat
gccaggacacagcccaaagataacatttctagtgatgcatgtgccatccc
ctgtcttctctctctggcttgtccatatactgctggtatctcatccattt
ctcccgagaaacaaacaactagctgtgttgctttttgggtgcaacacaag
gagaccaagatttgctgagtgaacgaagagacttaagaaccagctgtgtg
tctttggagaaagcctaagagatgaaggactagagtaaatgaggaaatct
catgaaaagatggaataactgggaagccagtgttgaaaggaaaactagaa
gcttgaattgatggttcccagatgctcaaatgatccccagttgtaaagag
gaaaagaacgttcacaaacacgcaataaaaaccatctttgcaggtggttt
tctacctagggcctgtcctgtccctctacctgtaatgaatgcatctacat
ctttttctgttccctgttgtttggaagacttgggatgctacactattttt
ccacttccttttaacatttcttttctgttgctaaaactaagtaatttatt
gactgcatgatttattcagagtagaagcttatttattccatgaatctgag
gctagatagttcatgggcatggtactgacctccagggagagctgtgtgct
gcagcagagatggcacacaagggctcatacactgagaaagagtaaacata
ccacaaagtgcttcaacacaaggccagttctgccatgtttacttacggtt
atgaaacctttgaatggataaacccatttgtaaggcatagtctttgacac
tgtcccttccaatgtctctctgtcaatctaacatgatatttctggggagc
acagtgaacactgcatgactctgagaagcaattctttcat
gaattccttaaagggtttttgaaaatagaatgctgagcacaggggcttat
aatcctatcaaattggaatacttagataggaagattgcatcaagttgtag
ttcagtctgctctactaactgagtagtggggcatagagatgggtagggag
accttctctcaacagaccaaaactaagtcgaaggaaacaagcaaacagac
aagaaaaagtgtgatgctgtgcaccacatttagagtttaatttattaggt
ctggggtgtggatcctaaagtgcatctcaaactgctgcttagacacaaga
cacaagacgcaagacgcaagacacaagacacaagacacaagacactctgc
cctgtggtttctaatttgctcaaatttcagccacctagaatctttcttcc
agtatcagcttcacacataacaaaataataaaaataagtcagaaaaaatg
caaagcacaaaaacttttcttccctctggtgttagcacaccctgcacaca
ccattctggacagtttgcatcctaactctgccttttcgagtccctgtcac
tgctctgtggtgacccgtgcttgtccccaccaccttccacttgctgaagt
aaaagagacctaggactcgagtttaatctgcagttatgtggatctccttt
agtcccttctgtgtttgctcctcttccttgggtcatggtgagagagctgt
aattctctttagtagtaagcaccttcttcctctctggagggcaccatatt
cctgcctccgctccaggctcatcactagggtttcttgtgcttttggaaaa
ttgtcatccccaggactactctacttgcttggctatagctgtccctcaga
aacatagggacattgggttttttacctccaaggttcattttctctagatc
cactttgtcggcccaaattagattccggaaaacaacgctttagatgttga
gctagatgacatttaaatctaaacagggtttgagtactgaaagtatgcct
gaaactatgccaattcttggagaacagtgcagtgctagatgatcaagtcc
ctgtcactgagagctgcatgttacagagagttaccatacacgttgcactt
tgtttccagagttgactctttcagaccaggtctggagtctctgcaatccg
gttccactgcatgtcttctgttccaatatcccactcacttctgttgaaaa
cag
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr6_111550092_111551245
seq2: B6Ng01-086H09.b_45_1184 (reverse)

seq1  ATGAAAGAA-TGCTTCCTCAGAGTCATGCAGTGGTTTCACTGTGCTCCCC  49
      ||||||||| ||||| |||||||||||||||||  |||||||||||||||
seq2  ATGAAAGAATTGCTT-CTCAGAGTCATGCAGTG--TTCACTGTGCTCCCC  47

seq1  AGAAATTATCATGTTAGAATTTTGACAGAGGAGAACATTGGGAAGGGACA  99
      ||||| ||||||||||||   |||||||| ||| ||||| ||||||||||
seq2  AGAAA-TATCATGTTAGA---TTGACAGA-GAG-ACATT-GGAAGGGACA  90

seq1  GTGTCAAAAGACCTATGCCCTTACAAATGGGTTTATCCATTCAAAGGTTT  149
      ||||| ||||| ||||| ||||||||||||||||||||||||||||||||
seq2  GTGTC-AAAGA-CTATG-CCTTACAAATGGGTTTATCCATTCAAAGGTTT  137

seq1  CATTAACCGTAAGTAAACATGGCAGAACTGGCCTTGTGTTGAAAGCACTT  199
      || |||||||||||||||||||||||||||||||||||||| ||||||||
seq2  CA-TAACCGTAAGTAAACATGGCAGAACTGGCCTTGTGTTG-AAGCACTT  185

seq1  TGTGGTATGTTTACTCTTTCTCAGTGTATGAGCCCTTGTGTGCCATCTCT  249
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGGTATGTTTACTCTTTCTCAGTGTATGAGCCCTTGTGTGCCATCTCT  235

seq1  GCTGCAGCACACAGCTCTCCCTGGAGGTCAGTACCATGCCCATGAACTAT  299
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTGCAGCACACAGCTCTCCCTGGAGGTCAGTACCATGCCCATGAACTAT  285

seq1  CTAGCCTCAGATTCATGGAATAAATAAGCTTCTACTCTGAATAAATCATG  349
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAGCCTCAGATTCATGGAATAAATAAGCTTCTACTCTGAATAAATCATG  335

seq1  CAGTCAATAAATTACTTAGTTTTAGCAACAGAAAAGAAATGTTAAAAGGA  399
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGTCAATAAATTACTTAGTTTTAGCAACAGAAAAGAAATGTTAAAAGGA  385

seq1  AGTGGAAAAATAGTGTAGCATCCCAAGTCTTCCAAACAACAGGGAACAGA  449
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTGGAAAAATAGTGTAGCATCCCAAGTCTTCCAAACAACAGGGAACAGA  435

seq1  AAAAGATGTAGATGCATTCATTACAGGTAGAGGGACAGGACAGGCCCTAG  499
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAGATGTAGATGCATTCATTACAGGTAGAGGGACAGGACAGGCCCTAG  485

seq1  GTAGAAAACCACCTGCAAAGATGGTTTTTATTGCGTGTTTGTGAACGTTC  549
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTAGAAAACCACCTGCAAAGATGGTTTTTATTGCGTGTTTGTGAACGTTC  535

seq1  TTTTCCTCTTTACAACTGGGGATCATTTGAGCATCTGGGAACCATCAATT  599
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTCCTCTTTACAACTGGGGATCATTTGAGCATCTGGGAACCATCAATT  585

seq1  CAAGCTTCTAGTTTTCCTTTCAACACTGGCTTCCCAGTTATTCCATCTTT  649
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAGCTTCTAGTTTTCCTTTCAACACTGGCTTCCCAGTTATTCCATCTTT  635

seq1  TCATGAGATTTCCTCATTTACTCTAGTCCTTCATCTCTTAGGCTTTCTCC  699
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCATGAGATTTCCTCATTTACTCTAGTCCTTCATCTCTTAGGCTTTCTCC  685

seq1  AAAGACACACAGCTGGTTCTTAAGTCTCTTCGTTCACTCAGCAAATCTTG  749
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGACACACAGCTGGTTCTTAAGTCTCTTCGTTCACTCAGCAAATCTTG  735

seq1  GTCTCCTTGTGTTGCACCCAAAAAGCAACACAGCTAGTTGTTTGTTTCTC  799
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCTCCTTGTGTTGCACCCAAAAAGCAACACAGCTAGTTGTTTGTTTCTC  785

seq1  GGGAGAAATGGATGAGATACCAGCAGTATATGGACAAGCCAGAGAGAGAA  849
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGAGAAATGGATGAGATACCAGCAGTATATGGACAAGCCAGAGAGAGAA  835

seq1  GACAGGGGATGGCACATGCATCACTAGAAATGTTATCTTTGGGCTGTGTC  899
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACAGGGGATGGCACATGCATCACTAGAAATGTTATCTTTGGGCTGTGTC  885

seq1  CTGGCATAATTTCACAGAGAAGTCTGAGAGCCAAAATCATGCTTCTAGAT  949
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGGCATAATTTCACAGAGAAGTCTGAGAGCCAAAATCATGCTTCTAGAT  935

seq1  TATCCCACAAGAGAATCAATACAGGTCTCACCACTTGTTTGTCTGAAGAC  999
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATCCCACAAGAGAATCAATACAGGTCTCACCACTTGTTTGTCTGAAGAC  985

seq1  AGCCCTAACAGGTGCTGCTTTTCAAGCATCAACAAAGAATGGGTTCATTC  1049
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCCCTAACAGGTGCTGCTTTTCAAGCATCAACAAAGAATGGGTTCATTC  1035

seq1  ATTAGAAGTAGTCATGATTGGAAGAAACAGATGATAGTAGGCAAAGTCAT  1099
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTAGAAGTAGTCATGATTGGAAGAAACAGATGATAGTAGGCAAAGTCAT  1085

seq1  CAGGAACCCCTGCCATGGTGAGATGTAGAGAGGACTCACAGCATGCAATG  1149
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGGAACCCCTGCCATGGTGAGATGTAGAGAGGACTCACAGCATGCAATG  1135

seq1  AATTC  1154
      |||||
seq2  AATTC  1140

seq1: chr6_111522947_111524163
seq2: B6Ng01-086H09.g_67_1269

seq1  GAATTCCTTAAAGGGTTTTTGAAAATAGAATGCTGAGCACAGGGGCTTAT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCTTAAAGGGTTTTTGAAAATAGAATGCTGAGCACAGGGGCTTAT  50

seq1  AATCCTATCAAATTGGAATACTTAGATAGGAAGATTGCATCAAGTTGTAG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATCCTATCAAATTGGAATACTTAGATAGGAAGATTGCATCAAGTTGTAG  100

seq1  TTCAGTCTGCTCTACTAACTGAGTAGTGGGGCATAGAGATGGGTAGGGAG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCAGTCTGCTCTACTAACTGAGTAGTGGGGCATAGAGATGGGTAGGGAG  150

seq1  ACCTTCTCTCAACAGACCAAAACTAAGTCGAAGGAAACAAGCAAACAGAC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCTTCTCTCAACAGACCAAAACTAAGTCGAAGGAAACAAGCAAACAGAC  200

seq1  AAGAAAAAGTGTGATGCTGTGCACCACATTTAGAGTTTAATTTATTAGGT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGAAAAAGTGTGATGCTGTGCACCACATTTAGAGTTTAATTTATTAGGT  250

seq1  CTGGGGTGTGGATCCTAAAGTGCATCTCAAACTGCTGCTTAGACACAAGA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGGGGTGTGGATCCTAAAGTGCATCTCAAACTGCTGCTTAGACACAAGA  300

seq1  CACAAGACGCAAGACGCAAGACACAAGACACAAGACACAAGACACTCTGC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACAAGACGCAAGACGCAAGACACAAGACACAAGACACAAGACACTCTGC  350

seq1  CCTGTGGTTTCTAATTTGCTCAAATTTCAGCCACCTAGAATCTTTCTTCC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTGTGGTTTCTAATTTGCTCAAATTTCAGCCACCTAGAATCTTTCTTCC  400

seq1  AGTATCAGCTTCACACATAACAAAATAATAAAAATAAGTCAGAAAAAATG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTATCAGCTTCACACATAACAAAATAATAAAAATAAGTCAGAAAAAATG  450

seq1  CAAAGCACAAAAACTTTTCTTCCCTCTGGTGTTAGCACACCCTGCACACA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAAGCACAAAAACTTTTCTTCCCTCTGGTGTTAGCACACCCTGCACACA  500

seq1  CCATTCTGGACAGTTTGCATCCTAACTCTGCCTTTTCGAGTCCCTGTCAC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCATTCTGGACAGTTTGCATCCTAACTCTGCCTTTTCGAGTCCCTGTCAC  550

seq1  TGCTCTGTGGTGACCCGTGCTTGTCCCCACCACCTTCCACTTGCTGAAGT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCTCTGTGGTGACCCGTGCTTGTCCCCACCACCTTCCACTTGCTGAAGT  600

seq1  AAAAGAGACCTAGGACTCGAGTTTAATCTGCAGTTATGTGGATCTCCTTT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAGAGACCTAGGACTCGAGTTTAATCTGCAGTTATGTGGATCTCCTTT  650

seq1  AGTCCCTTCTGTGTTTGCTCCTCTTCCTTGGGTCATGGTGAGAGAGCTGT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTCCCTTCTGTGTTTGCTCCTCTTCCTTGGGTCATGGTGAGAGAGCTGT  700

seq1  AATTCTCTTTAGTAGTAAGCACCTTCTTCCTCTCTGGAGGGCACCATATT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTCTCTTTAGTAGTAAGCACCTTCTTCCTCTCTGGAGGGCACCATATT  750

seq1  CCTGCCTCCGCTCCAGGCTCATCACTAGGGTTTCTTGTGCTTTTGGAAAA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTGCCTCCGCTCCAGGCTCATCACTAGGGTTTCTTGTGCTTTTGGAAAA  800

seq1  TTGTCATCCCCAGGACTACTCTACTTGCTTGGCTATAGCTGTCCCTCAGA  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGTCATCCCCAGGACTACTCTACTTGCTTGGCTATAGCTGTCCCTCAGA  850

seq1  AACATAGGGACATT-GGTTTTTTACCTCCAAGGTTCATTTTCTCTAGATC  899
      |||||||||||||| |||||||||||||||||||||||||||||||||||
seq2  AACATAGGGACATTGGGTTTTTTACCTCCAAGGTTCATTTTCTCTAGATC  900

seq1  CACTTTGTCGGCCCAAATTAGATTCCGGAAAACAACGCTTTAGATGTTGA  949
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACTTTGTCGGCCCAAATTAGATTCCGGAAAACAACGCTTTAGATGTTGA  950

seq1  GCTAGATGACATTTAAATCTAAACAGGGTTTGAGTACTGAAAGTATGCCT  999
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTAGATGACATTTAAATCTAAACAGGGTTTGAGTACTGAAAGTATGCCT  1000

seq1  GAAACTATGCCAAATTCTTGGAG-ACAGTGCAGTTGGCTAAGATGATCAA  1048
      ||||||||||| ||||||||||| ||||||||||  ||| ||||||||||
seq2  GAAACTATGCC-AATTCTTGGAGAACAGTGCAGT--GCT-AGATGATCAA  1046

seq1  GTCCCTGTCACTGAAGAGCTGCATGTTACAGGAGAAGTTACCCATTACAC  1098
      ||||||||||||| |||||||||||||||| ||| |||||||   |||||
seq2  GTCCCTGTCACTG-AGAGCTGCATGTTACA-GAG-AGTTACC--ATACAC  1091

seq1  GTTGCACTTTG-TTCCAGAGTTGACTCTTCAAGGAACACAGTCT-GAGTC  1146
      ||||||||||| |||||||||||||||||  ||  ||   |||| |||||
seq2  GTTGCACTTTGTTTCCAGAGTTGACTCTTTCAG--ACCAGGTCTGGAGTC  1139

seq1  TCTGCAAATCCTGGTCTCACTGCATGTCTTCTGTTCCACAAATACCCCAC  1196
      ||||| ||||| |||  ||||||||||||||||||||   |||| |||||
seq2  TCTGC-AATCC-GGTTCCACTGCATGTCTTCTGTTCC---AATATCCCAC  1184

seq1  TCACTTCTGTTTGGAAAACAG  1217
      |||||||||||  ||||||||
seq2  TCACTTCTGTT--GAAAACAG  1203