BAC Information

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BAC

Clone NameB6Ng01-086H10
Chromosome6 (Build37)
Map Location 124,822,417 - 125,002,806
singlet/doubletdoublet
Overlap geneCd4, Lag3, Ptms, Mlf2, EG667343, Cops7a, C530028O21Rik, Zfp384, Ing4, Acrbp
Upstream geneLOC384484, LOC623282, V2r1b, EG384486, Vmn2r-ps34, Vmn2r27, LOC623374, EG622297, Cd163, LOC100043530, 1700013D24Rik, 1700027F06Rik, 1700060L04Rik, Pex5, Clstn3, C1rl, C1r, C1s, LOC667277, EG317677, Mboat5, Emg1, Phb2, Ptpn6, Grcc10, Atn1, Eno2, Lrrc23, Spsb2, Tpi1, Usp5, Cdca3, Gnb3, Leprel2, Gpr162
Downstream geneGpr92, Chd4, Nol1, A930037G23Rik, Gapdh, Ncapd2, Mrpl51, Vamp1, Tapbpl, Cd27, 4930417O13Rik, Tuba3a, Ltbr, Scnn1a, Tnfrsf1a, Plekhg6, Cd9, Vwf, Tmem16b
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-086H10.bB6Ng01-086H10.g
ACCDH899854DH899855
length1,1481,194
definitionDH899854|Mus musculus domesticus DNA, BAC clone: B6Ng01-086H10, 5' end.DH899855|Mus musculus domesticus DNA, BAC clone: B6Ng01-086H10, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(125,001,649 - 125,002,806)(124,822,417 - 124,823,624)
sequence
gaattcagagttccctctgcttcctgggtgctaggatgaatggcctgtgc
catcaagttcagcagctttgagtttcttttttatgtgtcttttctttgtt
tttccttgtacgtgagtacactgttgctgtcttcagacacaacagaaaag
ggactcagaacctcagactgaattacagatggttgtgagccaccatgtgg
ctgctgggaactaaactcaggacctctggaagagcagtcagttttcttaa
ctgctgagacctatatctctagccccgtgtctatcttttcttccttcctt
tctttctttttgtatgtttacctttattttatgtgcattgctgtttttgc
ctgcatatatatgtgtgtgtgtgagggtgttaaatcgcctggaactggag
tcacagacagctgtgagctgccatgtggttgctgggaactgaacccccgt
cctctggaagaacagccagtgcttttaaccactgagccatctctccagcc
cagctccaagtttattgaaagatccactcttaaaaaaaaataaggtggtc
taagctaggcataggagtatatgcctttaatgccagcactctggagaaag
aggcagatctttgtaagttctagatagtgagttacaggccagctaggact
tcatagtcataccctgtctcaaaataaataaatctggtaactgaggaaaa
cacccagtgttgacctttgatctccacatacatgcatgcatgtgtacaca
cacacatacatacacacacacacacacacacacacacacacaccaaaaca
cattatgtataaacaaggacatgaccataacaatgctggtggtatgtgtc
accttctttcaagggtacctattccctaactcctagagcaaatgttacct
tttatccatctcatctagagaaacactatgtattctaaagaactagcaac
ctttctattagaatgaggggaacctatgaatcaaacccaggctcatgcat
agatgcgtatatagacaaagtataggttcagtcggcgtggtggcgcatgc
ttatccagccctgggagggcagaggcaagctgtattctgagtcagtcttg
ttctacaaagtgagttccagacatccaggctatatagagaaaccctgt
gaattcctgagcaggaaggaagctgaagggtgtgtagcctcttacccagc
actgagagtgtcatgccgaaccagttctttttctggtccagggtcacggt
gcagttccagaagtcgctgtcctgaacccttaggttggacatggagagaa
ctttggaaccactgacaactttaccctttttgtgtttgcactctgtcaag
gggttagagaccttagagttgctatccaaggtcagggtcaggctctgccc
ttgcaacaggctggtacccggactgaaggtcactgtagaggaagcagagt
acctgcatcacacaccatccccaaggatggagggagaaagaacaacagtg
tctctccatcattgtctttcaacagtgcctcccctcccaactcccagctg
gccatgcccagcataaggtaggggtcccctcccaccgcatcccccattaa
ccaagaggaacactctgacccacttgtggtctgaaatatcatcagttcag
gacctggttttggtgtgagcatggaagggaagaggaggagatgtctatac
cccaagactgcccgactcacctttgaacacccacaactccacctcctctt
tcctgttctccagctcacagatataagtctgagagtcttccatcttaagt
ttattgatgatgagaggaaacgatcctttctcccatgccccttttttgga
atcaaaacgatcaaactgcgaaggcgaacctcctgcaaatcgaagccata
caaaagaagttgaggtgccctggcacctctgctgaaaagagtgcccacaa
ctctgctggtctgagttggcagtctttaattcaccctcatgaaaggactc
tgaactgatgagaaggcccaccaatgtctatttacatggtgggaacagta
tcccactagctcaaaaataccataagatactctgctgatttgggagcaac
cactcttacaaactgaacactgtacataccatctaccatgatcttcacat
attcctgagaatacagactttttggcagatatgggacgctatcactcagg
ttgaagacatggctcggatcatacatctagtatttgttccatgaatagac
tatttaatgacattcagaactaatgcctcccgaagggatggtaagttaat
atacctcaatcttgtgtgtgtggtatcccctatctcagtcaggc
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr6_125001649_125002806
seq2: B6Ng01-086H10.b_44_1191 (reverse)

seq1  ACAGGGTTTCTCTATATAGCCCTGGATGTCCTGGAACTCACTTTGTAGAA  50
      ||||||||||||||||||| ||||||||| ||||||||||||||||||||
seq2  ACAGGGTTTCTCTATATAG-CCTGGATGT-CTGGAACTCACTTTGTAGAA  48

seq1  C-AGACTGGCCTCAGAAATCAGCCTGCCTCTGCCTCCCAAGTGCTGGGAT  99
      | ||||| | |||||||  |||| ||||||||||  || || |||||   
seq2  CAAGACT-GACTCAGAATACAGCTTGCCTCTGCCCTCCCAGGGCTGG---  94

seq1  TAAAAGCATGCGCCACCACGCCCGGCTGAACCTATACTTTTGTTCTATAT  149
       | ||||||||||||||||| ||| |||||||||||||||   |||||||
seq2  -ATAAGCATGCGCCACCACG-CCGACTGAACCTATACTTT--GTCTATAT  140

seq1  ACGCATTCTATGCATGAGGCCCTGGGTTTGATTCATAGGTTCCCCTCATT  199
      ||||| ||||||||||||  ||||||||||||||||||||||||||||||
seq2  ACGCA-TCTATGCATGAG--CCTGGGTTTGATTCATAGGTTCCCCTCATT  187

seq1  CTAATAG-AAGGTTGCTAGTTCTTTAGAATACATAGTG-TTCTCTAGATG  247
      ||||||| |||||||||||||||||||||||||||||| |||||||||||
seq2  CTAATAGAAAGGTTGCTAGTTCTTTAGAATACATAGTGTTTCTCTAGATG  237

seq1  AGATGGATAAAAGGTAACATTTGCTCTAGGAGTTAGGGAATAGGTACCCT  297
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGATGGATAAAAGGTAACATTTGCTCTAGGAGTTAGGGAATAGGTACCCT  287

seq1  TGAAAGAAGGTGACACATACCACCAGCATTTGTTATGGTCATGTCCTTGT  347
      |||||||||||||||||||||||||||| |||||||||||||||||||||
seq2  TGAAAGAAGGTGACACATACCACCAGCA-TTGTTATGGTCATGTCCTTGT  336

seq1  TTATACATAATGTG-TTTGGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTG  396
      |||||||||||||| |||||||||||||||||||||||||||||||||||
seq2  TTATACATAATGTGTTTTGGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTG  386

seq1  TATGTATGTGTGTGTGTACACATGCATGCATGTATGTGGAGATCAAAGGT  446
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATGTATGTGTGTGTGTACACATGCATGCATGTATGTGGAGATCAAAGGT  436

seq1  CAACACTGGGTGTTTTCCTCAGTTACCAGATTTATTTATTTTGAGACAGG  496
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAACACTGGGTGTTTTCCTCAGTTACCAGATTTATTTATTTTGAGACAGG  486

seq1  GTATGACTATGAAGTCCTAGCTGGCCTGTAACTCACTATCTAGAACTTAC  546
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTATGACTATGAAGTCCTAGCTGGCCTGTAACTCACTATCTAGAACTTAC  536

seq1  AAAGATCTGCCTCTTTCTCCAGAGTGCTGGCATTAAAGGCATATACTCCT  596
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGATCTGCCTCTTTCTCCAGAGTGCTGGCATTAAAGGCATATACTCCT  586

seq1  ATGCCTAGCTTAGACCACCTTATTTTTTTTTAAGAGTGGATCTTTCAATA  646
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGCCTAGCTTAGACCACCTTATTTTTTTTTAAGAGTGGATCTTTCAATA  636

seq1  AACTTGGAGCTGGGCTGGAGAGATGGCTCAGTGGTTAAAAGCACTGGCTG  696
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACTTGGAGCTGGGCTGGAGAGATGGCTCAGTGGTTAAAAGCACTGGCTG  686

seq1  TTCTTCCAGAGGACGGGGGTTCAGTTCCCAGCAACCACATGGCAGCTCAC  746
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTTCCAGAGGACGGGGGTTCAGTTCCCAGCAACCACATGGCAGCTCAC  736

seq1  AGCTGTCTGTGACTCCAGTTCCAGGCGATTTAACACCCTCACACACACAC  796
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCTGTCTGTGACTCCAGTTCCAGGCGATTTAACACCCTCACACACACAC  786

seq1  ATATATATGCAGGCAAAAACAGCAATGCACATAAAATAAAGGTAAACATA  846
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATATATGCAGGCAAAAACAGCAATGCACATAAAATAAAGGTAAACATA  836

seq1  CAAAAAGAAAGAAAGGAAGGAAGAAAAGATAGACACGGGGCTAGAGATAT  896
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAAAAGAAAGAAAGGAAGGAAGAAAAGATAGACACGGGGCTAGAGATAT  886

seq1  AGGTCTCAGCAGTTAAGAAAACTGACTGCTCTTCCAGAGGTCCTGAGTTT  946
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGTCTCAGCAGTTAAGAAAACTGACTGCTCTTCCAGAGGTCCTGAGTTT  936

seq1  AGTTCCCAGCAGCCACATGGTGGCTCACAACCATCTGTAATTCAGTCTGA  996
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTTCCCAGCAGCCACATGGTGGCTCACAACCATCTGTAATTCAGTCTGA  986

seq1  GGTTCTGAGTCCCTTTTCTGTTGTGTCTGAAGACAGCAACAGTGTACTCA  1046
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTTCTGAGTCCCTTTTCTGTTGTGTCTGAAGACAGCAACAGTGTACTCA  1036

seq1  CGTACAAGGAAAAACAAAGAAAAGACACATAAAAAAGAAACTCAAAGCTG  1096
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGTACAAGGAAAAACAAAGAAAAGACACATAAAAAAGAAACTCAAAGCTG  1086

seq1  CTGAACTTGATGGCACAGGCCATTCATCCTAGCACCCAGGAAGCAGAGGG  1146
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGAACTTGATGGCACAGGCCATTCATCCTAGCACCCAGGAAGCAGAGGG  1136

seq1  AACTCTGAATTC  1158
      ||||||||||||
seq2  AACTCTGAATTC  1148

seq1: chr6_124822417_124823624
seq2: B6Ng01-086H10.g_69_1262

seq1  GAATTCCTGAGCAGGAAGGAAGCTGAAGGGTGTGTAGCCTCTTACCCAGC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCTGAGCAGGAAGGAAGCTGAAGGGTGTGTAGCCTCTTACCCAGC  50

seq1  ACTGAGAGTGTCATGCCGAACCAGTTCTTTTTCTGGTCCAGGGTCACGGT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTGAGAGTGTCATGCCGAACCAGTTCTTTTTCTGGTCCAGGGTCACGGT  100

seq1  GCAGTTCCAGAAGTCGCTGTCCTGAACCCTTAGGTTGGACATGGAGAGAA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAGTTCCAGAAGTCGCTGTCCTGAACCCTTAGGTTGGACATGGAGAGAA  150

seq1  CTTTGGAACCACTGACAACTTTACCCTTTTTGTGTTTGCACTCTGTCAAG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTGGAACCACTGACAACTTTACCCTTTTTGTGTTTGCACTCTGTCAAG  200

seq1  GGGTTAGAGACCTTAGAGTTGCTATCCAAGGTCAGGGTCAGGCTCTGCCC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGTTAGAGACCTTAGAGTTGCTATCCAAGGTCAGGGTCAGGCTCTGCCC  250

seq1  TTGCAACAGGCTGGTACCCGGACTGAAGGTCACTGTAGAGGAAGCAGAGT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGCAACAGGCTGGTACCCGGACTGAAGGTCACTGTAGAGGAAGCAGAGT  300

seq1  ACCTGCATCACACACCATCCCCAAGGATGGAGGGAGAAAGAACAACAGTG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCTGCATCACACACCATCCCCAAGGATGGAGGGAGAAAGAACAACAGTG  350

seq1  TCTCTCCATCATTGTCTTTCAACAGTGCCTCCCCTCCCAACTCCCAGCTG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTCTCCATCATTGTCTTTCAACAGTGCCTCCCCTCCCAACTCCCAGCTG  400

seq1  GCCATGCCCAGCATAAGGTAGGGGTCCCCTCCCACCGCATCCCCCATTAA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCATGCCCAGCATAAGGTAGGGGTCCCCTCCCACCGCATCCCCCATTAA  450

seq1  CCAAGAGGAACACTCTGACCCACTTGTGGTCTGAAATATCATCAGTTCAG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAAGAGGAACACTCTGACCCACTTGTGGTCTGAAATATCATCAGTTCAG  500

seq1  GACCTGGTTTTGGTGTGAGCATGGAAGGGAAGAGGAGGAGATGTCTATAC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACCTGGTTTTGGTGTGAGCATGGAAGGGAAGAGGAGGAGATGTCTATAC  550

seq1  CCCAAGACTGCCCGACTCACCTTTGAACACCCACAACTCCACCTCCTCTT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCAAGACTGCCCGACTCACCTTTGAACACCCACAACTCCACCTCCTCTT  600

seq1  TCCTGTTCTCCAGCTCACAGATATAAGTCTGAGAGTCTTCCATCTTAAGT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCTGTTCTCCAGCTCACAGATATAAGTCTGAGAGTCTTCCATCTTAAGT  650

seq1  TTATTGATGATGAGAGGAAACGATCCTTTCTCCCATGCCCCTTTTTTGGA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTATTGATGATGAGAGGAAACGATCCTTTCTCCCATGCCCCTTTTTTGGA  700

seq1  ATCAAAACGATCAAACTGCGAAGGCGAACCTCCTGCAAATCGAAGCCATA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCAAAACGATCAAACTGCGAAGGCGAACCTCCTGCAAATCGAAGCCATA  750

seq1  CAAAAGAAGTTGAGGTGCCCTGGCACCTCTGCTGAAAAGAGTGCCCACAA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAAAGAAGTTGAGGTGCCCTGGCACCTCTGCTGAAAAGAGTGCCCACAA  800

seq1  CTCTGCTGGTCTGAGTTGGCAGTCTTTAATTCACCCTCATG-AAGGACTC  849
      ||||||||||||||||||||||||||||||||||||||||| ||||||||
seq2  CTCTGCTGGTCTGAGTTGGCAGTCTTTAATTCACCCTCATGAAAGGACTC  850

seq1  TGAACTGATGAGAAGGCCCACCAATGTCTATTTACATGGTGGGAACAGTA  899
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAACTGATGAGAAGGCCCACCAATGTCTATTTACATGGTGGGAACAGTA  900

seq1  TCCCACTAGCTCAAAAATACCATAAGATACTCTGCTGATTTGGGGAGCAA  949
      ||||||||||||||||||||||||||||||||||||||||| ||||||||
seq2  TCCCACTAGCTCAAAAATACCATAAGATACTCTGCTGATTT-GGGAGCAA  949

seq1  CCACTCTTACAAACTGAACACTGTACATACCATCTACCATGATCTTCACA  999
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCACTCTTACAAACTGAACACTGTACATACCATCTACCATGATCTTCACA  999

seq1  ATAATTCCTGAGAATACAGACTGTTTGGCAGATAT-GGACGCTATCACTC  1048
         ||||||||||||||||||| |||||||||||| ||||||||||||||
seq2  --TATTCCTGAGAATACAGACTTTTTGGCAGATATGGGACGCTATCACTC  1047

seq1  AGGGTTGAGACAATGGCTCGAATTCATACATCTTAGTAATTTGTCCCATG  1098
      ||| |  |||| |||||||| | ||||||||| |||| |||||| |||||
seq2  AGGTTGAAGAC-ATGGCTCGGA-TCATACATC-TAGT-ATTTGTTCCATG  1093

seq1  AATTAGAACTA-TTAATGACCATTCAGAACTAAATGCCTTCCCCAGAGGA  1147
      || ||| |||| ||||||| ||||||||||| |||||| |||| |  |||
seq2  AA-TAG-ACTATTTAATGA-CATTCAGAACT-AATGCC-TCCCGAAGGGA  1138

seq1  TGGTAAAGTAAATAATACTTCAATCTTGTGTGGTGGTGTATACCTCTAAT  1197
      |||| |||| ||| |||| |||||||||||| |||  |||| || || ||
seq2  TGGT-AAGTTAAT-ATACCTCAATCTTGTGT-GTGTGGTAT-CCCCT-AT  1183

seq1  CTCAGTCAGGC  1208
      |||||||||||
seq2  CTCAGTCAGGC  1194