BAC Information

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BAC

Clone NameB6Ng01-087B10
Chromosome6 (Build37)
Map Location 19,941,006 - 20,027,831
singlet/doubletdoublet
Overlap genenone
Upstream geneLOC626180, Eif3s6-ps4
Downstream geneLOC100040838
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-087B10.bB6Ng01-087B10.g
ACCDH900313DH900314
length1,1981,155
definitionDH900313|Mus musculus domesticus DNA, BAC clone: B6Ng01-087B10, 5' end.DH900314|Mus musculus domesticus DNA, BAC clone: B6Ng01-087B10, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(20,026,625 - 20,027,831)(19,941,006 - 19,942,177)
sequence
gaattctgtacatggctagcatgagaatctttaatttttcaaatagcttg
aaatgacatacttatattgaaagtatgtaattttctgctgttaattcctt
agtacaaagactgttgaaatgtatactataatataaattcattttaactc
ttgcattcttccaatcatggaaaaatacatcaactgattctttcatgaat
aagaaaaattctcattataagacaacaaagactcacacaccaattaacaa
tttctttctacctttcaaaactaagaaccagttagtaaggagaaaagatt
atttttgaaatcctctttgagtctaagaaaaagtgcaactgctacaaatt
caagtaacataagcttgtctactgagtgacagttcatattctaaaaattg
tcgcacttacatttgaatctaatttaattcttcttcaaccagcatgatat
ctctaaacagatgctctgaaggaagtcattcatatctactctgtttatat
catgtttcttggcgttctgtcttccttttactttattgattctcacacct
tagcagtagtcctgtaattcatgactggttcagtaaatcatcaaataagc
tcatcaaataagctaagtacaaaattgcttgtctataccctaactagatt
agttatatattagctctgacagataaagactattacataattacatttgc
tattgtaatacagttgaaactctccttgaacaaaatttcattttatgagt
ttagattatcgcatttaacttgatattttcttatgtaagacctcccaagc
aaattctttgaaaccatgaatactcccatttatatagaaaaatgagaatt
tttatcattttaaaattttttaaattgtttatatgataaaaattttataa
tctttgttgtttgttttctgtatatttagagacattttagaatattttct
agataaagcattaggctgtattgtctgtaggaaacacttctttgtaaaga
acatagatacagaaattagattgattcacataaacattttgtctgtttaa
gtggtgatgggtgaaaacagttgaattctttatcagcttccctgcttaaa
ttatggttaaaggattccattacaagatcatcgttattctcatttcaatc
acatccaaagaccacactgaacattgttaagttcttaccttgaggaac
gaattcttacctaattagaaaaaaattaatatatatttgtatggaaaatc
attgatctttttagcaagaacagcattttgaaatacttcctttaaattgt
tatttgttcttgtctcatatacacaagcaagacagtcattgtcttttttt
actggggaaagttttttaacatacatggatttttttcagtgtattctgat
gaagcttttattttcctatctctttgttatcttttaatttttattctctt
tcctgtgatctcctttcctattgttaaagacttacacatacctcaaacca
attcatggaagtaaaatgtaataaatgaaatataccagcacacacaaaca
cacatacagccacacaacacacagaaacatacacacaaacactgttacac
agacacatatacatacatacacatatgcatacatacacacacacacacac
actaacacacacacataaattaggatcctacacagataatacaagtatta
aaagataccaggttctctttctttctttctttctttctttctttctttct
ttctttctttctttctttctttctttctttctttctttctttccttttct
ttttttttctttttctcttttttttttaactgttaaaagtcattgagaat
aacctaaggcttacttttaaggttagaacctagttacaatttacataata
ttgatgatgttacaaactttacttccctatcctgtgacttgctgaaataa
atggaaagattttcttagtgactatttcacacttgagcaatagagaaagt
agattttatctgtttatgcacagggaaaagtggcagttttaatttattca
ttttgagagacaaaacttcactgtagatgagaaagtgttaggagaatcca
gggttttcacacttcttcttttggaaatgcaagtgaatttctgtaagtgc
ctgataaactcctgcttctcctgagattaggatgcaaccctatctctaga
actttgacctcactttctcttgaaatgtaaacacatgccaacaaacactt
tctgctttactctttatcctgtagttgggagtatttactcaagtttgcag
tcgtatccagtttcaatgctgtttcataggtctctatccttggcagaaat
gtttt
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr6_20026625_20027831
seq2: B6Ng01-087B10.b_48_1245 (reverse)

seq1  GTTCCTCATAGTTAGAAACTAAACAATGTTCAGTGTGGGTTCTTTGGATG  50
      |||||||| || ||  |||| |||||||||||||||||  ||||||||||
seq2  GTTCCTCA-AGGTAAGAACTTAACAATGTTCAGTGTGG--TCTTTGGATG  47

seq1  TGATTTGGAAATGAGAATAAACGATGATCTTGTAATGGTAT-CTTTTACC  99
      |||||  ||||||||||| ||||||||||||||||||| || |||| |||
seq2  TGATT--GAAATGAGAAT-AACGATGATCTTGTAATGGAATCCTTTAACC  94

seq1  ATAATTTTAAGCAGGGAAGCTTGATAAAGAATTCAACTTGTTTTCACCCA  149
      |||| ||||||||||||||| |||||||||||||||| ||||||||||||
seq2  ATAA-TTTAAGCAGGGAAGC-TGATAAAGAATTCAAC-TGTTTTCACCCA  141

seq1  TCACCACTTAAACAGACAAAATGTTTATGTGAATCAATCTAATTTCTGTA  199
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCACCACTTAAACAGACAAAATGTTTATGTGAATCAATCTAATTTCTGTA  191

seq1  TCTATGTTCTTTACAAAGAAGTGTTTCCTACAGACAATACAGCCTAATGC  249
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTATGTTCTTTACAAAGAAGTGTTTCCTACAGACAATACAGCCTAATGC  241

seq1  TTTATCTTAGAAAATATTCTAAAATGTCTCTAAATATACAGAAAACAAAC  299
      |||||| |||||||||||||||||||||||||||||||||||||||||||
seq2  TTTATC-TAGAAAATATTCTAAAATGTCTCTAAATATACAGAAAACAAAC  290

seq1  AACAAAGATTATAAAATTTTTATCATATAAACAATTTAAAAAATTTTAAA  349
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACAAAGATTATAAAATTTTTATCATATAAACAATTTAAAAAATTTTAAA  340

seq1  ATGATAAAAATTCTCATTTTTCTATATAAATGGGAGTATTCATGGTTTCA  399
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGATAAAAATTCTCATTTTTCTATATAAATGGGAGTATTCATGGTTTCA  390

seq1  AAGAATTTGCTTGGGAGGTCTTACATAAGAAAATATCAAGTTAAATGCGA  449
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGAATTTGCTTGGGAGGTCTTACATAAGAAAATATCAAGTTAAATGCGA  440

seq1  TAATCTAAACTCATAAAATGAAATTTTGTTCAAGGAGAGTTTCAACTGTA  499
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAATCTAAACTCATAAAATGAAATTTTGTTCAAGGAGAGTTTCAACTGTA  490

seq1  TTACAATAGCAAATGTAATTATGTAATAGTCTTTATCTGTCAGAGCTAAT  549
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTACAATAGCAAATGTAATTATGTAATAGTCTTTATCTGTCAGAGCTAAT  540

seq1  ATATAACTAATCTAGTTAGGGTATAGACAAGCAATTTTGTACTTAGCTTA  599
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATAACTAATCTAGTTAGGGTATAGACAAGCAATTTTGTACTTAGCTTA  590

seq1  TTTGATGAGCTTATTTGATGATTTACTGAACCAGTCATGAATTACAGGAC  649
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGATGAGCTTATTTGATGATTTACTGAACCAGTCATGAATTACAGGAC  640

seq1  TACTGCTAAGGTGTGAGAATCAATAAAGTAAAAGGAAGACAGAACGCCAA  699
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACTGCTAAGGTGTGAGAATCAATAAAGTAAAAGGAAGACAGAACGCCAA  690

seq1  GAAACATGATATAAACAGAGTAGATATGAATGACTTCCTTCAGAGCATCT  749
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAACATGATATAAACAGAGTAGATATGAATGACTTCCTTCAGAGCATCT  740

seq1  GTTTAGAGATATCATGCTGGTTGAAGAAGAATTAAATTAGATTCAAATGT  799
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTTAGAGATATCATGCTGGTTGAAGAAGAATTAAATTAGATTCAAATGT  790

seq1  AAGTGCGACAATTTTTAGAATATGAACTGTCACTCAGTAGACAAGCTTAT  849
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGTGCGACAATTTTTAGAATATGAACTGTCACTCAGTAGACAAGCTTAT  840

seq1  GTTACTTGAATTTGTAGCAGTTGCACTTTTTCTTAGACTCAAAGAGGATT  899
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTACTTGAATTTGTAGCAGTTGCACTTTTTCTTAGACTCAAAGAGGATT  890

seq1  TCAAAAATAATCTTTTCTCCTTACTAACTGGTTCTTAGTTTTGAAAGGTA  949
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAAAAATAATCTTTTCTCCTTACTAACTGGTTCTTAGTTTTGAAAGGTA  940

seq1  GAAAGAAATTGTTAATTGGTGTGTGAGTCTTTGTTGTCTTATAATGAGAA  999
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAAGAAATTGTTAATTGGTGTGTGAGTCTTTGTTGTCTTATAATGAGAA  990

seq1  TTTTTCTTATTCATGAAAGAATCAGTTGATGTATTTTTCCATGATTGGAA  1049
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTTCTTATTCATGAAAGAATCAGTTGATGTATTTTTCCATGATTGGAA  1040

seq1  GAATGCAAGAGTTAAAATGAATTTATATTATAGTATACATTTCAACAGTC  1099
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATGCAAGAGTTAAAATGAATTTATATTATAGTATACATTTCAACAGTC  1090

seq1  TTTGTACTAAGGAATTAACAGCAGAAAATTACATACTTTCAATATAAGTA  1149
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGTACTAAGGAATTAACAGCAGAAAATTACATACTTTCAATATAAGTA  1140

seq1  TGTCATTTCAAGCTATTTGAAAAATTAAAGATTCTCATGCTAGCCATGTA  1199
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTCATTTCAAGCTATTTGAAAAATTAAAGATTCTCATGCTAGCCATGTA  1190

seq1  CAGAATTC  1207
      ||||||||
seq2  CAGAATTC  1198

seq1: chr6_19941006_19942177
seq2: B6Ng01-087B10.g_67_1221

seq1  GAATTCTTACCTAATTAGAAAAAAATTAATATATATTTGTATGGAAAATC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTTACCTAATTAGAAAAAAATTAATATATATTTGTATGGAAAATC  50

seq1  ATTGATCTTTTTAGCAAGAACAGCATTTTGAAATACTTCCTTTAAATTGT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTGATCTTTTTAGCAAGAACAGCATTTTGAAATACTTCCTTTAAATTGT  100

seq1  TATTTGTTCTTGTCTCATATACACAAGCAAGACAGTCATTGTCTTTTTTT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTTGTTCTTGTCTCATATACACAAGCAAGACAGTCATTGTCTTTTTTT  150

seq1  ACTGGGGAAAGTTTTTTAACATACATGGATTTTTTTCAGTGTATTCTGAT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTGGGGAAAGTTTTTTAACATACATGGATTTTTTTCAGTGTATTCTGAT  200

seq1  GAAGCTTTTATTTTCCTATCTCTTTGTTATCTTTTAATTTTTATTCTCTT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAGCTTTTATTTTCCTATCTCTTTGTTATCTTTTAATTTTTATTCTCTT  250

seq1  TCCTGTGATCTCCTTTCCTATTGTTAAAGACTTACACATACCTCAAACCA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCTGTGATCTCCTTTCCTATTGTTAAAGACTTACACATACCTCAAACCA  300

seq1  ATTCATGGAAGTAAAATGTAATAAATGAAATATACCAGCACACACAAACA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTCATGGAAGTAAAATGTAATAAATGAAATATACCAGCACACACAAACA  350

seq1  CACATACAGCCACACAACACACAGAAACATACACACAAACACTGTTACAC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACATACAGCCACACAACACACAGAAACATACACACAAACACTGTTACAC  400

seq1  AGACACATATACATACATACACATATGCATACATACACACACACACACAC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGACACATATACATACATACACATATGCATACATACACACACACACACAC  450

seq1  ACTAACACACACACATAAATTAGGATCCTACACAGATAATACAAGTATTA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTAACACACACACATAAATTAGGATCCTACACAGATAATACAAGTATTA  500

seq1  AAAGATACCAGGTTCTCTTTCTTTCTTTCTTTCTTTCTTTCTTTCTTTCT  550
      |||||||||||||||    |||||||||||||||||||||||||||||||
seq2  AAAGATACCAGGTTC----TCTTTCTTTCTTTCTTTCTTTCTTTCTTTCT  546

seq1  TTCTTTCTTTCTTTCTTTCTTTCTTTCTTTCTTTCTTTCTTTCTTTCCTT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTTTCTTTCTTTCTTTCTTTCTTTCTTTCTTTCTTTCTTTCTTTCCTT  596

seq1  TTCTTTTTTTTTCTTTTTCTCTTTTTTTTTTAACTGTTAAAAGTCATTGA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTTTTTTTTTCTTTTTCTCTTTTTTTTTTAACTGTTAAAAGTCATTGA  646

seq1  GAATAACCTAAGGCTTACTTTTAAGGTTAGAAACTAGTTACAATTTACAT  700
      |||||||||||||||||||||||||||||||| |||||||||||||||||
seq2  GAATAACCTAAGGCTTACTTTTAAGGTTAGAACCTAGTTACAATTTACAT  696

seq1  AATATTGATGATGTTACAAACTTTACTTCCCTATCCTGTGACTTGCTGAA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATATTGATGATGTTACAAACTTTACTTCCCTATCCTGTGACTTGCTGAA  746

seq1  ATAAATGGAAAGATTTTCTTAGTGACTATTTCACACTTGAGCAATAGAGA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAAATGGAAAGATTTTCTTAGTGACTATTTCACACTTGAGCAATAGAGA  796

seq1  AAGTAGATTTTATCTGTTTATGCACAGGGAAAAGTGGCAGTTTTCATTTA  850
      |||||||||||||||||||||||||||||||||||||||||||| |||||
seq2  AAGTAGATTTTATCTGTTTATGCACAGGGAAAAGTGGCAGTTTTAATTTA  846

seq1  TTCATTTTGAGAGACAAAACTTTCACTGTAGATTGAGATAGTGTTAGGAG  900
      |||||||||||||||||||| ||||||||||| ||||| |||||||||||
seq2  TTCATTTTGAGAGACAAAAC-TTCACTGTAGA-TGAGAAAGTGTTAGGAG  894

seq1  AATCCAGGGTTTTCACAC-TCTTCTTTTGG-AATGCAAGTGAATTTCTGT  948
      |||||||||||||||||| ||||||||||| |||||||||||||||||||
seq2  AATCCAGGGTTTTCACACTTCTTCTTTTGGAAATGCAAGTGAATTTCTGT  944

seq1  AAGTGCCTGATAAACT-CTGCTTCTCCTGAGATTAGGATGCAACCTTATC  997
      |||||||||||||||| |||||||||||||||||||||||||||| ||||
seq2  AAGTGCCTGATAAACTCCTGCTTCTCCTGAGATTAGGATGCAACCCTATC  994

seq1  TCTAAGAACTTTGACCTCACTTTCTCTTGAAATGTAAACACATGCCAACA  1047
      ||| ||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCT-AGAACTTTGACCTCACTTTCTCTTGAAATGTAAACACATGCCAACA  1043

seq1  AACAACTTTCTGGCCTTTACTCTTTATCCTGTAGTTGGGAAGTATTTACT  1097
      ||| ||||||||  ||||||||||||||||||||||||| ||||||||||
seq2  AAC-ACTTTCTG--CTTTACTCTTTATCCTGTAGTTGGG-AGTATTTACT  1089

seq1  CAAGGTTTGCAGTCGGTTATCCAGTTTTCAATGCTGTTTTTCATAAGTCT  1147
      ||| |||||||||||  ||||||| |||||||||||  ||||||| ||||
seq2  CAA-GTTTGCAGTCG--TATCCAG-TTTCAATGCTG--TTTCATAGGTCT  1133

seq1  CTAT-CTTGGCACAGAAAAATGTTTT  1172
      |||| ||||||    | |||||||||
seq2  CTATCCTTGGC----AGAAATGTTTT  1155