BAC Information

Click to search

BAC

Clone NameB6Ng01-087H10
Chromosome6 (Build37)
Map Location 99,346,071 - 99,530,232
singlet/doubletdoublet
Overlap genenone
Upstream geneLOC665963, LOC665979, Foxp1
Downstream geneEif4e3, Gpr27, Prok2, LOC384466, LOC626503, LOC100043703, Rybp, Shq1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-087H10.bB6Ng01-087H10.g
ACCDH900582DH900583
length1,132378
definitionDH900582|Mus musculus domesticus DNA, BAC clone: B6Ng01-087H10, 5' end.DH900583|Mus musculus domesticus DNA, BAC clone: B6Ng01-087H10, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(99,529,074 - 99,530,232)(99,346,071 - 99,346,454)
sequence
gaattcttgtgcaagtagcttatttgagaggtgttactgtgaaaccctgg
gaagactgtgggaaggcaagccattctggggccaggtagcaagctcgatg
ccttgcaggtaactaaagaggccacttgggaagtcaggaaactcccaccc
ttcctacaccccttcttcctggaggaacctgagttagcggctgaggaaag
atgatgatgtagcagaaataaacacaagatggaaagatgatcctgtgtcc
tgggagaaatcaattaatttgggttcatgggttgctttgcagccagtaaa
aaatatgtattcttttatattttaaaatgcatgaagagcttggaaataca
gaggaagagcaaaagaaagccagagaagagtgttagattctctggaggtg
gagtttcaggctcttttgagcaagccgatgtggatgtgaagaaccaaact
cgggtcctctggaataacaggatgttctcttaacagctgagacatctctt
cagccccacacaatcgccttttgaaactttgatcttgtcatatgtgctaa
tagtccattggccaaagcaagtcacatgacaaggttccacgtcgggagtt
tgtactccatccacacagacagtaatggtggaacacaagtatttctgact
aattatcttatggaccacctaagagtctgcagtcagaacaaggcacttga
gagagttctggaccattacactaatattttcttatgttcaaagtattcaa
gccctggcaaagctgctgttgatttagccactgtatggtggtaccaagac
ctgactgctttcttttctgaagaagccagtttgggacttcagaaattgtc
caagacctacttctgggaggaccctgactttgatcattggacagctgaga
tttgaggcgggcctttacacttgggcttcttagctcatttccacatggtg
ggagagtcagatgaggtatcacagaatagagagatcaagacctagacagt
tctatctcatcattatcatgagtcataagttctctattatcactagctat
gtcaacatgagcaggagataaaatacatgctacagtgacagaggtgagct
gtgcctcgctgagaaaacagttaaagatattc
ttatatgtgttttaaatgatgaggcttcatttaaatggttccctttttaa
tgctctcaataatcctttcattgaaacaaaaggataaaacacagagccca
ttaacgacaatttagcctgatgaacaatatggtaattaaagcaccaatgg
cttaaggatgttctgataagatggaaaaggcggcaggatgcggacacagc
ttcagagggaagttgtattttcagtacctggtccaaaatatcaagtggtc
atctactatttaaaatgcaagccaatgaggagaatcattggaactaaaaa
tggtccattaattaccatgcaggcccatggtagttaattcaatcctatgt
ctttttttgggggggaggaggggttagg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr6_99529074_99530232
seq2: B6Ng01-087H10.b_43_1174 (reverse)

seq1  GAATATCTTTTTACTTGTTTTCTTCAGCGAAGACCACAGCTCAACCTCTG  50
      |||||||  ||||  ||||||| ||||||| |  |||||||| |||||||
seq2  GAATATC--TTTAACTGTTTTC-TCAGCGAGG--CACAGCTC-ACCTCTG  44

seq1  TCACTGTAGCAATGTATTTTATCTCCTTGCTTCATGTTGACCAATAAGCT  100
      |||||||||| ||||||||||||||| ||| ||||||||||  || ||||
seq2  TCACTGTAGC-ATGTATTTTATCTCC-TGC-TCATGTTGAC--AT-AGCT  88

seq1  TAAGTTGAATACAATAGAGAAC-TATGAACCTTCATGATAAATGATGAGA  149
        |||     | |||||||||| |||||    ||||||| ||||||||||
seq2  --AGT----GATAATAGAGAACTTATGA---CTCATGAT-AATGATGAGA  128

seq1  TAGAACTGTCCTAGGTCTTTGATTCTCTCTATTCTGTGATACCTCATCTT  199
      ||||||||| ||||||| |||| ||||||||||||||||||||||||| |
seq2  TAGAACTGT-CTAGGTC-TTGA-TCTCTCTATTCTGTGATACCTCATC-T  174

seq1  GACTCTCCCACCATGTGGAAATGAGCTAAGAAAGCCCAAGTTGTAAAGGC  249
      |||||||||||||||||||||||||||||| ||||||||| |||||||||
seq2  GACTCTCCCACCATGTGGAAATGAGCTAAG-AAGCCCAAG-TGTAAAGGC  222

seq1  CCGCCTCAAATCTCAGCTGTCCAATGATCAAAGTCAGGGTCCTCCCAGAA  299
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCGCCTCAAATCTCAGCTGTCCAATGATCAAAGTCAGGGTCCTCCCAGAA  272

seq1  GTAGGTCTTGGACAATTTCTGAAGTCCCAAACTGGCTTCTTCAGAAAAGA  349
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTAGGTCTTGGACAATTTCTGAAGTCCCAAACTGGCTTCTTCAGAAAAGA  322

seq1  AAGCAGTCAGGTCTTGGTACCACCATACAGTGGCTAAATCAACAGCAGCT  399
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGCAGTCAGGTCTTGGTACCACCATACAGTGGCTAAATCAACAGCAGCT  372

seq1  TTGCCAGGGCTTGAATACTTTGAACATAAGAAAATATTAGTGTAATGGTC  449
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGCCAGGGCTTGAATACTTTGAACATAAGAAAATATTAGTGTAATGGTC  422

seq1  CAGAACTCTCTCAAGTGCCTTGTTCTGACTGCAGACTCTTAGGTGGTCCA  499
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGAACTCTCTCAAGTGCCTTGTTCTGACTGCAGACTCTTAGGTGGTCCA  472

seq1  TAAGATAATTAGTCAGAAATACTTGTGTTCCACCATTACTGTCTGTGTGG  549
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAGATAATTAGTCAGAAATACTTGTGTTCCACCATTACTGTCTGTGTGG  522

seq1  ATGGAGTACAAACTCCCGACGTGGAACCTTGTCATGTGACTTGCTTTGGC  599
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGGAGTACAAACTCCCGACGTGGAACCTTGTCATGTGACTTGCTTTGGC  572

seq1  CAATGGACTATTAGCACATATGACAAGATCAAAGTTTCAAAAGGCGATTG  649
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAATGGACTATTAGCACATATGACAAGATCAAAGTTTCAAAAGGCGATTG  622

seq1  TGTGGGGCTGAAGAGATGTCTCAGCTGTTAAGAGAACATCCTGTTATTCC  699
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGGGGCTGAAGAGATGTCTCAGCTGTTAAGAGAACATCCTGTTATTCC  672

seq1  AGAGGACCCGAGTTTGGTTCTTCACATCCACATCGGCTTGCTCAAAAGAG  749
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGGACCCGAGTTTGGTTCTTCACATCCACATCGGCTTGCTCAAAAGAG  722

seq1  CCTGAAACTCCACCTCCAGAGAATCTAACACTCTTCTCTGGCTTTCTTTT  799
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTGAAACTCCACCTCCAGAGAATCTAACACTCTTCTCTGGCTTTCTTTT  772

seq1  GCTCTTCCTCTGTATTTCCAAGCTCTTCATGCATTTTAAAATATAAAAGA  849
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTCTTCCTCTGTATTTCCAAGCTCTTCATGCATTTTAAAATATAAAAGA  822

seq1  ATACATATTTTTTACTGGCTGCAAAGCAACCCATGAACCCAAATTAATTG  899
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATACATATTTTTTACTGGCTGCAAAGCAACCCATGAACCCAAATTAATTG  872

seq1  ATTTCTCCCAGGACACAGGATCATCTTTCCATCTTGTGTTTATTTCTGCT  949
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTCTCCCAGGACACAGGATCATCTTTCCATCTTGTGTTTATTTCTGCT  922

seq1  ACATCATCATCTTTCCTCAGCCGCTAACTCAGGTTCCTCCAGGAAGAAGG  999
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACATCATCATCTTTCCTCAGCCGCTAACTCAGGTTCCTCCAGGAAGAAGG  972

seq1  GGTGTAGGAAGGGTGGGAGTTTCCTGACTTCCCAAGTGGCCTCTTTAGTT  1049
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTGTAGGAAGGGTGGGAGTTTCCTGACTTCCCAAGTGGCCTCTTTAGTT  1022

seq1  ACCTGCAAGGCATCGAGCTTGCTACCTGGCCCCAGAATGGCTTGCCTTCC  1099
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCTGCAAGGCATCGAGCTTGCTACCTGGCCCCAGAATGGCTTGCCTTCC  1072

seq1  CACAGTCTTCCCAGGGTTTCACAGTAACACCTCTCAAATAAGCTACTTGC  1149
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACAGTCTTCCCAGGGTTTCACAGTAACACCTCTCAAATAAGCTACTTGC  1122

seq1  ACAAGAATTC  1159
      ||||||||||
seq2  ACAAGAATTC  1132

seq1: chr6_99346071_99346454
seq2: B6Ng01-087H10.g_69_452

seq1  GAATTCTTATATGTGTTTTAAATGATGAGGCTTCATTTAAATGGTTCCCT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTTATATGTGTTTTAAATGATGAGGCTTCATTTAAATGGTTCCCT  50

seq1  TTTTAATGCTCTCAATAATCCTTTCATTGAAACAAAAGGATAAAACACAG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTAATGCTCTCAATAATCCTTTCATTGAAACAAAAGGATAAAACACAG  100

seq1  AGCCCATTAACGACAATTTAGCCTGATGAACAATATGGTAATTAAAGCAC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCCCATTAACGACAATTTAGCCTGATGAACAATATGGTAATTAAAGCAC  150

seq1  CAATGGCTTAAGGATGTTCTGATAAGATGGAAAAGGCGGCAGGATGCGGA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAATGGCTTAAGGATGTTCTGATAAGATGGAAAAGGCGGCAGGATGCGGA  200

seq1  CACAGCTTCAGAGGGAAGTTGTATTTTCAGTACCTGGTCCAAAATATCAA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACAGCTTCAGAGGGAAGTTGTATTTTCAGTACCTGGTCCAAAATATCAA  250

seq1  GTGGTCATCTACTATTTAAAATGCAAGCCAATGAGGAGAATCATTGGAAC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGGTCATCTACTATTTAAAATGCAAGCCAATGAGGAGAATCATTGGAAC  300

seq1  TAAAAATGGTCCATTAATTACCATGCAGGCCCATGGTAGTTAATTCAATC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAAAATGGTCCATTAATTACCATGCAGGCCCATGGTAGTTAATTCAATC  350

seq1  CTATGTCTTTTTTTGGGGGGGAGGAGGGGTTAGG  384
      ||||||||||||||||||||||||||||||||||
seq2  CTATGTCTTTTTTTGGGGGGGAGGAGGGGTTAGG  384