BAC Information

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BAC

Clone NameB6Ng01-087J15
Chromosome1 (Build37)6 (Build37)
Map Location 9,181,076 - 9,181,145109,336,117 - 109,336,353
singlet/doubletsingletsinglet
Overlap geneSntg1
Upstream geneLOC100039474, LOC620444, EG665007, LOC665103
Downstream geneLOC100039464, EG620853, LOC665138, Rrs1, Adhfe1, LOC620542, 3110035E14Rik, Mybl1, Vcpip1, LOC100039536, LOC665173, Sgk3, EG620986, LOC100039643, 6030422M02Rik, LOC100039596, 4930418G15Rik, Cops5, Cspp1, Arfgef1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-087J15.bB6Ng01-087J15.g
ACCDH900682DH900683
length1,017237
definitionDH900682|Mus musculus domesticus DNA, BAC clone: B6Ng01-087J15, 5' end.DH900683|Mus musculus domesticus DNA, BAC clone: B6Ng01-087J15, 3' end.
singlet/doubletsingletsinglet
BLAST hituniqueunique
Map location.(9,181,076 - 9,181,145)(109,336,117 - 109,336,353)
sequence
gaattctcacctgaggaataccgaaaggctgagaaacacctgaaaaaaat
gttcaacatccttaatcatcagagaaatgcaaatcaaaacaaccctgaga
ttccatctcacaccagtcagaatggctaagatcaaaagttcaggtgacag
cagatgctggcgaggatgtggagaaagaggaacacccctccattgttggt
gggattgccagcttgtacaaccactctggaaatcagtctggcatttcctc
aaaaaacgggacatagtactaccagaggatcccgcaatacctctcctggg
catatatccagaagatgttccaaccagtaagaaggacacatgctccacta
tgttcatagcatccttatttataatagccagaacctggaaagaacccaga
tacccctcaacagaggaatggatacagaaaatgtggtacatttacacaat
ggagtactactcagctattaaaaggaatgaatttatgaaattcctaggca
aatggatggacctggagggcatcatcctgagtgaggtaacccaatcacaa
aagaactcacacaatatgtactcactgataagtggatattagcccagaaa
cttataatacccaagatacaagatacaatttgttaaacacatgaaactca
tgaagaatgacaaccaaagtatggatactttgcctcttcttagaattggg
aacaaaacattcctggaaggagttacagagtcaaaatttggagctgagat
gaaaggatggaccatctagagactgccatatccagggatccatcccataa
tcagcttccaaatgctgacaccattgcatacattagcactattttgctga
aaggacccagatagagctgttttttttttttgttttgttttttttttttt
tttttgggtgggttttttttttttttttttgggagactatgcccggggcc
tagcaaacaacagaagtggatgctcacagtcagctattggatgaatcaca
gcccccaatggaggagc
accatggctacatcagtgatgaatctcatggcgatgggaacatatgaaag
ctgccatggtaggtaccattttctctatctctaaggtgttcttgtgtact
ttcaggatggattgccaagtcatttagaaaaaaaatctgtcaatatcaat
gaacttttcacaaagtgaattcaaggtcatagcaattatttcacaggtag
gtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr1_9181076_9181145
seq2: B6Ng01-087J15.b_922_975

seq1  TTTTGTTTGGTTTTTTTTTTTTTTTTTTTTGGTGGTGGTGATGGTGGTGG  50
      |||||||| |||||||||||||||||||                 |||||
seq2  TTTTGTTTTGTTTTTTTTTTTTTTTTTT----------------GGGTGG  34

seq1  GTTTTTTTTTTTTCTTTTTG  70
      ||||||||||||| ||||||
seq2  GTTTTTTTTTTTTTTTTTTG  54

seq1: chr6_109336117_109336353
seq2: B6Ng01-087J15.g_76_312

seq1  ACCATGGCTACATCAGTGATGAATCTCATGGCGATGGGAACATATGAAAG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCATGGCTACATCAGTGATGAATCTCATGGCGATGGGAACATATGAAAG  50

seq1  CTGCCATGGTAGGTACCATTTTCTCTATCTCTAAGGTGTTCTTGTGTACT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGCCATGGTAGGTACCATTTTCTCTATCTCTAAGGTGTTCTTGTGTACT  100

seq1  TTCAGGATGGATTGCCAAGTCATTTAGAAAAAAAATCTGTCAATATCAAT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCAGGATGGATTGCCAAGTCATTTAGAAAAAAAATCTGTCAATATCAAT  150

seq1  GAACTTTTCACAAAGTGAATTCAAGGTCATAGCAATTATTTCACAGGTAG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAACTTTTCACAAAGTGAATTCAAGGTCATAGCAATTATTTCACAGGTAG  200

seq1  GTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTG  237
      |||||||||||||||||||||||||||||||||||||
seq2  GTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTG  237