BAC Information

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BAC

Clone NameB6Ng01-087J22
Chromosome6 (Build37)
Map Location 50,902,983 - 51,069,517
singlet/doubletdoublet
Overlap genenone
Upstream geneLOC100041653, LOC624524, Mpp6, Dfna5h, LOC100041681, Osbpl3, Cycs, 4921507P07Rik, LOC213320, EG666302, EG666308, EG666310, Npvf, LOC100040877
Downstream geneEG625167, Nfe2l3, Hnrpa2b1, Cbx3, Snx10, LOC100041820, Skap2, LOC666391
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-087J22.bB6Ng01-087J22.g
ACCDH900694DH900695
length1,2011,108
definitionDH900694|Mus musculus domesticus DNA, BAC clone: B6Ng01-087J22, 5' end.DH900695|Mus musculus domesticus DNA, BAC clone: B6Ng01-087J22, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(51,068,320 - 51,069,517)(50,902,983 - 50,904,102)
sequence
gaattctcctgctcacccttttctggtttttctaaattcattagtatgat
gtttcacagagcagttttcagaaacatggtgtatcaatagaaagtatagt
gtttttgcacattcctatacactaacacaggaaaaccaaaaacacgtgag
catagtattttattagaccagtctttgtctttccttatgccttacacaca
gtgtaaaggtttttggcattttaccaacaatttggttatttcaagaggta
aaacaggagactcaaattcccaaccagatttccttgtctccccagatagt
gccgccatgtggaatccgctgatggccgtgattccataccctctgagccg
atgagagacactgtctcttcctaagcctttcttgtctgttcctatgacca
cagagaagtggacaggaagctgtgaggctgtgtttggatatttcctgtga
ctgctgccattgcccgggggatactatgagtaatacggttggctgctcat
tttgactgaatgcacagttgactgactcgtttcctgtgagtctctgccca
tgctgacatacgtccatgtggcttggattaaacagaaaatacaggcaaag
aaagtcagggatgtggtaattatttggataattcagatcaaaacctactt
ttccatgacatatgttcaagggaaagatggctttacgtttgggagcttat
ttagatcagagtctggcaaatattctagagagtaactatttccagaatgt
gcaggctatacaatctctgttctaaccatgcaactttttgtggcaccaca
aaaaatagccttaggaaatacccagaaggatgggaagtcgtctcatggaa
aacttatttgtgggttgggagatagctcatttgatgatgctcgctttgtg
agcaacgaggacttgaattggatccctagaattcaaatgagaaagccagg
aggatcttattagtcccaacgctggggatgcagacaggaggatcctgcag
cctgccagcccttgaccactgggtgtgctcctatgctctgccccctaaag
caaatggcacctggggatgatattcaggttgacttctgccctccgtgtgc
accacgtgtaggtggtattctccacttccaggtctttgccaatctatgtg
taaaaaaaaaggatggtaactccagacttggctccacaggcctggattat
t
gaattcttaatactgatcatttaggcttaatgagtaaaaaatattaattt
caggttatatacatatttttgtagcaggcaagtaaaatgaagtgttcaat
aaaagtttttaggcataaaaatacattccagaggattgaaataatatgag
aaaagtagaatataaattattcatttatggaaataaggaaatactatgaa
atttcaagagttttttttttttttctgtacacttgagaaacagcaagttt
tggaactaaggaggcatcttggcggggtggaccagagtctgtatccacag
cattcctgtaaatgcccgatgggcacagtagctcgcctgtaattctgact
gagagggaagaccccaaagcaaaccggctgggtagacgaactgaaatggc
agggttctggctcaatccagaggtcccgccttaaagaataaggtggaaat
gatggcctcgggcctccatacacacacatgcacactagcatacacatgtg
caccctcacatatgtaaacgtacatataccacacgcacatgtagctacat
gcaaaaaatagaaagcatcaaattgaatagactctgtggctatgtttgaa
agagccatataatgttttaatgtcagtacctaaaacttggtttaaaaaaa
attacatccagaatagctgttacaagtcaggattaaaaaagaaagaaaga
aagaaagaaagaaagaaagaaagaaagaaagaaagaaagaaagaaagaaa
gaaaggaaggaaggaaggaaggaaggaaggaaggaaggaaggaaggaaga
aggagaaaggaaggaaggaaggaaggaaggaatgaatgtaagatagaaga
aagtaagtaagaatgatatgtatgaaagaaggaagaaagaaagaagaaga
ggaaatcctaacctaaaattgggacatcatacatggtttcaaatcttccc
agggctcagaaacagagttgaaaatgctgctgactatacctctgctcaga
gttaatttaatgactttctaccccacaaaccaccagtcaaatatgattct
ggtcatctgtgaatccacaccattctgaaaattcaattggaaagttctct
ggagcagt
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr6_51068320_51069517
seq2: B6Ng01-087J22.b_48_1248 (reverse)

seq1  AATAATCCAAGCCTGT-GAGCCATGTCTGGAGGTACCATCTTTTTTTTTT  49
      ||||||||| |||||| |||||| |||||||| |||||||     |||||
seq2  AATAATCCAGGCCTGTGGAGCCAAGTCTGGAGTTACCATC----CTTTTT  46

seq1  TTTTACACATAGATTG--CAAGACCTGGGAAGTGGAGAATACCCACATAC  97
      ||||||||||||||||   ||||||| |||||||||||||| |||| |||
seq2  TTTTACACATAGATTGGCAAAGACCT-GGAAGTGGAGAATA-CCACCTAC  94

seq1  ACGT-GTGCACACGGAGGGCAGAAGTCAACCTGAATATCATTCCCCAGGT  146
      |||| ||||||||||||||||||||||||||||||||||| |||||||||
seq2  ACGTGGTGCACACGGAGGGCAGAAGTCAACCTGAATATCA-TCCCCAGGT  143

seq1  GCCATTTGCTTTGGGGGGCAGAGCATA-GAGCACACCCAGTGGTCAA-GG  194
      |||||||||||| |||||||||||||| ||||||||||||||||||| ||
seq2  GCCATTTGCTTTAGGGGGCAGAGCATAGGAGCACACCCAGTGGTCAAGGG  193

seq1  CTGGCAGGCTGCAGGATCCTCCTGTCTGCATCCCCAGCGTTGGGACT-AT  243
      ||||||||||||||||||||||||||||||||||||||||||||||| ||
seq2  CTGGCAGGCTGCAGGATCCTCCTGTCTGCATCCCCAGCGTTGGGACTAAT  243

seq1  AAGAT-CTCCTGGCTTTCTCATTTGAATTCTAGGGATCCAATTCAAGTCC  292
      ||||| ||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGATCCTCCTGGCTTTCTCATTTGAATTCTAGGGATCCAATTCAAGTCC  293

seq1  TCGTTGCTCACAAAGCGAGCATCATCAATTGAGCTATCTCCCAACCCACA  342
      |||||||||||||||||||||||||||| |||||||||||||||||||||
seq2  TCGTTGCTCACAAAGCGAGCATCATCAAATGAGCTATCTCCCAACCCACA  343

seq1  AATAAGTTTTCCATGAGACGACTTCCCATCCTTCTGGGTATTTCCTAAGG  392
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATAAGTTTTCCATGAGACGACTTCCCATCCTTCTGGGTATTTCCTAAGG  393

seq1  CTA-TTTTTGTGGTGCCACAAAAAGTTGCATGGTTAGAACAGAGATTGTA  441
      ||| ||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTATTTTTTGTGGTGCCACAAAAAGTTGCATGGTTAGAACAGAGATTGTA  443

seq1  TAGCCTGCACATTCTGG-AATAGTTACTCTCTAGAATATTTGCCAGACTC  490
      ||||||||||||||||| ||||||||||||||||||||||||||||||||
seq2  TAGCCTGCACATTCTGGAAATAGTTACTCTCTAGAATATTTGCCAGACTC  493

seq1  TGATCTAAATAAGCTCCCAAACGTAAAGCCATCTTTCCCTTGAACATATG  540
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGATCTAAATAAGCTCCCAAACGTAAAGCCATCTTTCCCTTGAACATATG  543

seq1  TCATGGAAAAGTAGGTTTTGATCTGAATTATCCAAATAATTACCACATCC  590
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCATGGAAAAGTAGGTTTTGATCTGAATTATCCAAATAATTACCACATCC  593

seq1  CTGACTTTCTTTGCCTGTATTTTCTGTTTAATCCAAGCCACATGGACGTA  640
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGACTTTCTTTGCCTGTATTTTCTGTTTAATCCAAGCCACATGGACGTA  643

seq1  TGTCAGCATGGGCAGAGACTCACAGGAAACGAGTCAGTCAACTGTGCATT  690
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTCAGCATGGGCAGAGACTCACAGGAAACGAGTCAGTCAACTGTGCATT  693

seq1  CAGTCAAAATGAGCAGCCAACCGTATTACTCATAGTATCCCCCGGGCAAT  740
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGTCAAAATGAGCAGCCAACCGTATTACTCATAGTATCCCCCGGGCAAT  743

seq1  GGCAGCAGTCACAGGAAATATCCAAACACAGCCTCACAGCTTCCTGTCCA  790
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCAGCAGTCACAGGAAATATCCAAACACAGCCTCACAGCTTCCTGTCCA  793

seq1  CTTCTCTGTGGTCATAGGAACAGACAAGAAAGGCTTAGGAAGAGACAGTG  840
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTCTCTGTGGTCATAGGAACAGACAAGAAAGGCTTAGGAAGAGACAGTG  843

seq1  TCTCTCATCGGCTCAGAGGGTATGGAATCACGGCCATCAGCGGATTCCAC  890
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTCTCATCGGCTCAGAGGGTATGGAATCACGGCCATCAGCGGATTCCAC  893

seq1  ATGGCGGCACTATCTGGGGAGACAAGGAAATCTGGTTGGGAATTTGAGTC  940
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGGCGGCACTATCTGGGGAGACAAGGAAATCTGGTTGGGAATTTGAGTC  943

seq1  TCCTGTTTTACCTCTTGAAATAACCAAATTGTTGGTAAAATGCCAAAAAC  990
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCTGTTTTACCTCTTGAAATAACCAAATTGTTGGTAAAATGCCAAAAAC  993

seq1  CTTTACACTGTGTGTAAGGCATAAGGAAAGACAAAGACTGGTCTAATAAA  1040
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTACACTGTGTGTAAGGCATAAGGAAAGACAAAGACTGGTCTAATAAA  1043

seq1  ATACTATGCTCACGTGTTTTTGGTTTTCCTGTGTTAGTGTATAGGAATGT  1090
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATACTATGCTCACGTGTTTTTGGTTTTCCTGTGTTAGTGTATAGGAATGT  1093

seq1  GCAAAAACACTATACTTTCTATTGATACACCATGTTTCTGAAAACTGCTC  1140
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAAAAACACTATACTTTCTATTGATACACCATGTTTCTGAAAACTGCTC  1143

seq1  TGTGAAACATCATACTAATGAATTTAGAAAAACCAGAAAAGGGTGAGCAG  1190
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGAAACATCATACTAATGAATTTAGAAAAACCAGAAAAGGGTGAGCAG  1193

seq1  GAGAATTC  1198
      ||||||||
seq2  GAGAATTC  1201

seq1: chr6_50902983_50904102
seq2: B6Ng01-087J22.g_70_1177

seq1  GAATTCTTAATACTGATCATTTAGGCTTAATGAGTAAAAAATATTAATTT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTTAATACTGATCATTTAGGCTTAATGAGTAAAAAATATTAATTT  50

seq1  CAGGTTATATACATATTTTTGTAGCAGGCAAGTAAAATGAAGTGTTCAAT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGGTTATATACATATTTTTGTAGCAGGCAAGTAAAATGAAGTGTTCAAT  100

seq1  AAAAGTTTTTAGGCATAAAAATACATTCCAGAGGATTGAAATAATATGAG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAGTTTTTAGGCATAAAAATACATTCCAGAGGATTGAAATAATATGAG  150

seq1  AAAAGTAGAATATAAATTATTCATTTATGGAAATAAGGAAATACTATGAA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAGTAGAATATAAATTATTCATTTATGGAAATAAGGAAATACTATGAA  200

seq1  ATTTCAAGAGTTTTTTTTTTTTTTCTGTACACTTGAGAAACAGCAAGTTT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTCAAGAGTTTTTTTTTTTTTTCTGTACACTTGAGAAACAGCAAGTTT  250

seq1  TGGAACTAAGGAGGCATCTTGGCGGGGTGGACCAGAGTCTGTATCCACAG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGAACTAAGGAGGCATCTTGGCGGGGTGGACCAGAGTCTGTATCCACAG  300

seq1  CATTCCTGTAAATGCCCGATGGGCACAGTAGCTCGCCTGTAATTCTGACT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATTCCTGTAAATGCCCGATGGGCACAGTAGCTCGCCTGTAATTCTGACT  350

seq1  GAGAGGGAAGACCCCAAAGCAAACCGGCTGGGTAGACGAACTGAAATGGC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGAGGGAAGACCCCAAAGCAAACCGGCTGGGTAGACGAACTGAAATGGC  400

seq1  AGGGTTCTGGCTCAATCCAGAGGTCCCGCCTTAAAGAATAAGGTGGAAAT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGGTTCTGGCTCAATCCAGAGGTCCCGCCTTAAAGAATAAGGTGGAAAT  450

seq1  GATGGCCTCGGGCCTCCATACACACACATGCACACTAGCATACACATGTG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATGGCCTCGGGCCTCCATACACACACATGCACACTAGCATACACATGTG  500

seq1  CACCCTCACATATGTAAACGTACATATACCACACGCACATGTAGCTACAT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACCCTCACATATGTAAACGTACATATACCACACGCACATGTAGCTACAT  550

seq1  GCAAAAAATAGAAAGCATCAAATTGAATAGACTCTGTGGCTATGTTTGAA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAAAAAATAGAAAGCATCAAATTGAATAGACTCTGTGGCTATGTTTGAA  600

seq1  AGAGCCATATAATGTTTTAATGTCAGTACCTAAAACTTGGTTTAAAAAAA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGCCATATAATGTTTTAATGTCAGTACCTAAAACTTGGTTTAAAAAAA  650

seq1  ATTACATCCAGAATAGCTGTTACAAGTCAGGATTAAAAAAGAAAGAAAGA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTACATCCAGAATAGCTGTTACAAGTCAGGATTAAAAAAGAAAGAAAGA  700

seq1  AAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAA  750

seq1  GAAAGGAAGGAAGGAAGGAAGGAAGGAAGGAAGGAAGGAAGGAAGGAAGA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAAGGAAGGAAGGAAGGAAGGAAGGAAGGAAGGAAGGAAGGAAGGAAGA  800

seq1  AAGGAAGAAAGGAAGGAAGGAAGGAAGGAAGGAAGGAA-GGAAGAAAGAA  849
      |  | ||||||||||||||||||||||||||||| ||| | |||| || |
seq2  A--GGAGAAAGGAAGGAAGGAAGGAAGGAAGGAATGAATGTAAGATAG-A  847

seq1  AGAAAGAAAGAAAGAAAGA-AAGAAAGAAAGAAAGAAAGAAAGAAAGAAA  898
      |||||| ||| ||||| || | | | ||||| ||| ||||||||||||| 
seq2  AGAAAGTAAGTAAGAATGATATGTATGAAAG-AAGGAAGAAAGAAAGAA-  895

seq1  GAAAGAGGAAATCCTAACCTAAAATTGGGACATCATACATGGTTTCAAAT  948
        ||||||||||||||||||||||||||||||||||||||||||||||||
seq2  -GAAGAGGAAATCCTAACCTAAAATTGGGACATCATACATGGTTTCAAAT  944

seq1  CTTCCCAGGGCTTCAGAAACAAGAGTTTGAAAATGCCTGCTGACTATACC  998
      ||||||||||| |||||||| |||| ||||||||| ||||||||||||||
seq2  CTTCCCAGGGC-TCAGAAAC-AGAG-TTGAAAATG-CTGCTGACTATACC  990

seq1  TCTGCTCAGTATGTTTTAATTTAAATGACTTTCTTACCCCCACAACTACC  1048
      ||||||||    |  ||||||| |||||||||| ||||||   ||| |||
seq2  TCTGCTCA----GAGTTAATTT-AATGACTTTC-TACCCCACAAACCACC  1034

seq1  AG-CATATATGATTCTGGTCATCTGTGACCCAACCACAATCTGAAAATAT  1097
      || || ||||||||||||||||||||||  | ||  || ||||||||| |
seq2  AGTCAAATATGATTCTGGTCATCTGTGAATCCACACCATTCTGAAAAT-T  1083

seq1  CAA-TGGAAAAGTCTCT-GAGCAGT  1120
      ||| ||||||  ||||| |||||||
seq2  CAATTGGAAAGTTCTCTGGAGCAGT  1108