BAC Information

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BAC

Clone NameB6Ng01-087N21
Chromosome14 (Build37)6 (Build37)
Map Location 118,657,393 - 118,657,944126,573,011 - 126,574,014
singlet/doubletsingletsinglet
Overlap geneLOC100043825
Upstream geneGpc6, 5730405N03Rik, LOC100043822, Dct, Tgds, Gpr180, LOC100043824, LOC100043539, Sox21
Downstream geneEG668814, LOC435422, Abcc4, Cldn10, Dzip1, Dnajc3a, LOC100043828, Ugcgl2, Hs6st3
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-087N21.bB6Ng01-087N21.g
ACCDH900874DH900875
length7391,015
definitionDH900874|Mus musculus domesticus DNA, BAC clone: B6Ng01-087N21, 5' end.DH900875|Mus musculus domesticus DNA, BAC clone: B6Ng01-087N21, 3' end.
singlet/doubletsingletsinglet
BLAST hituniqueunique
Map location.(118,657,393 - 118,657,944)(126,573,011 - 126,574,014)
sequence
gaattccccaagaaagggcagcatctaggagactttccagacccctaggt
gggggaggctgtttcctctcacgggttggagatccctgtagtaacccagg
agccaggaaacttcctcaaagagaaggggaggttgagaagaggcgatgat
taggaaagcaatggctgagcacccccccccccccccaaagggagcaaacg
gatgctggttagcaggattcaatggaggtgtttagggagctggggttggt
aacattccatttcttcagctctatgttaattaaataaatgagcttattag
tttacaactcaatgagttatacgacgaagagccatgtccttttgctggac
gctttaaggaaaaagttaagaaaaagtaactcggaatgttataaaatgca
atacagcttttggtgggatggggggcaaggactaaaaccatttgtaccat
ccagaaacttccatcatccctgaagctactgtgtaaactctgcagtataa
gtaacagtgcttttagaatatttcagcaggaactgagtcagaaaaggtac
caaaagctggacaaaaatttccccatgagcaacatgtggtgagggggtgt
agtgttttgaagcgagccatgctgcgctgatgggcatgcatcagactgca
caggaacctcagtctttatacactcacggcgggttggaattcccatcaag
tgatctgtgagggaattttctggtgggcatgacgtgaca
gaattccaggcttgaataattaataagtaaatagatggagctctctgggt
tcagcttagtcagcctgtcactgcaccgtcaccatctttatcaatgccag
aagagatcattctgctaagaatcactgatgtccagaccatcacccatcac
catcaaaagaaacagtccctttctacttctcttgactcatgggacactgt
gttttaaaagaaaaacaaaacaaaacagaaaaaaaacaacttaaaccaat
ttcacaaagaactgacaagatttggttaaaaattctactccagtcttcct
ccccaacatgatacaaaaatgtatgaaagtaacagttgatttaattccct
gcctttcttcccctcagctgatcagaaagaagcatggggcattctgggaa
gcaagagcaacaatcacagagggaaaaattgtcccatgaaaatacacggc
cagctatgctcagaaaggacaagtctctgctgagaaatggaaacagcgac
tcctcacaggagtatcttgctacctggcacagttggagtgacacagataa
agacctgagaatgtgtccccagtgagcttcctcctcagtcagctccccct
cttagtgtctccagagtgatgtcagcaagctaaaaggcaagattggctga
gacaggcagagggaataagaaggcaaagcgatcttcagaaagactaagac
gttgtatgttgatgttaactctcgtgccttagctgagtggctggactgct
ctacaccatgacaggtagaactctggactctgaacacattaagccagctc
tttgtagctgtcacagggtctagccctcttaccaaaaagagcatctagca
gactttatattgtcaagggtggtggaaaaaaagatcatacaggtcagata
atggtgtatatacataatgctatcaaacatattcctattatcagtaacga
agaactgatatttccctaagcctcctcatccctctattgactgaacaata
tctcaatcgcaatgt
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr14_118657393_118657944
seq2: B6Ng01-087N21.b_232_784

seq1  AAAGGGAGCAAACGGATGCTGGTTAGCAGGATTCAATGGAGGTGTTTAGG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGGGAGCAAACGGATGCTGGTTAGCAGGATTCAATGGAGGTGTTTAGG  50

seq1  GAGCTGGGGTTGGTAACATTCCATTTCTTCAGCTCTATGTTAATTAAATA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGCTGGGGTTGGTAACATTCCATTTCTTCAGCTCTATGTTAATTAAATA  100

seq1  AATGAGCTTATTAGTTTACAACTCAATGAGTTATACGACGAAGAGCCATG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATGAGCTTATTAGTTTACAACTCAATGAGTTATACGACGAAGAGCCATG  150

seq1  TCCTTTTGCTGGACGCTTTAAGGAAAAAGTTAAGAAAAAGTAACTCGGAA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCTTTTGCTGGACGCTTTAAGGAAAAAGTTAAGAAAAAGTAACTCGGAA  200

seq1  TGTTATAAAATGCAATACAGCTTTTGGTGGGATGGGGGGCAAGGACTAAA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTTATAAAATGCAATACAGCTTTTGGTGGGATGGGGGGCAAGGACTAAA  250

seq1  ACCATTTGTACCATCCAGAAACTTCCATCATCCCTGAAGCTACTGTGTAA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCATTTGTACCATCCAGAAACTTCCATCATCCCTGAAGCTACTGTGTAA  300

seq1  ACTCTGCAGTATAAGTAACAGTGCTTTTAGAATATTTCAGCAGGAACTGA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTCTGCAGTATAAGTAACAGTGCTTTTAGAATATTTCAGCAGGAACTGA  350

seq1  GTCAGAAAAGGTACCAAAAGCTGGACAAAAATTTCCCCATGAGCAACATG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCAGAAAAGGTACCAAAAGCTGGACAAAAATTTCCCCATGAGCAACATG  400

seq1  TGGTGAGGGGGTGTAGTG-TTTGAAGCGAGCCATGCTGTGCTGATGGGCA  449
      |||||||||||||||||| ||||||||||||||||||| |||||||||||
seq2  TGGTGAGGGGGTGTAGTGTTTTGAAGCGAGCCATGCTGCGCTGATGGGCA  450

seq1  TGCATCAAACTGCACAGGAACCTCAGTCATTATAACACTCACGGC-GGCT  498
      ||||||| |||||||||||||||||||| |||| ||||||||||| || |
seq2  TGCATCAGACTGCACAGGAACCTCAGTCTTTAT-ACACTCACGGCGGGTT  499

seq1  GGAATTCCCATCAAGTGATCTGTGAGGGAATTTCCAGGTGGCCATGACGT  548
      ||||||||||||||||||||||||||||||||| | ||||| ||||||||
seq2  GGAATTCCCATCAAGTGATCTGTGAGGGAATTTTCTGGTGGGCATGACGT  549

seq1  GACA  552
      ||||
seq2  GACA  553

seq1: chr6_126573011_126574014
seq2: B6Ng01-087N21.g_68_1082

seq1  GAATTCCAGGCATGAATAATTAATAAGTAAATAGATGGAGCTCTCTGGGT  50
      ||||||||||| ||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCAGGCTTGAATAATTAATAAGTAAATAGATGGAGCTCTCTGGGT  50

seq1  TCAGCTTAGTCAGCCTGTCACTGCACCGTCACCATCTTTATCAATGCCAG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAGCTTAGTCAGCCTGTCACTGCACCGTCACCATCTTTATCAATGCCAG  100

seq1  AAGAGATCATTCTGCTAAGAATCACTGATGTCCAGACCATCACCCATCAC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGAGATCATTCTGCTAAGAATCACTGATGTCCAGACCATCACCCATCAC  150

seq1  CATCAAAAGAAACAGTCCCTTTCTACTTCTCTTGACTCATGGGACACTGT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATCAAAAGAAACAGTCCCTTTCTACTTCTCTTGACTCATGGGACACTGT  200

seq1  GTTTTAAAAGAAAAACAAAACAAAACAGAAAAAAAACAACTTAAACCAAT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTTTAAAAGAAAAACAAAACAAAACAGAAAAAAAACAACTTAAACCAAT  250

seq1  TTCACAAAGAACTGACAAGATTTGGTTAAAAATTCTACTCCAGTCTTCCT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCACAAAGAACTGACAAGATTTGGTTAAAAATTCTACTCCAGTCTTCCT  300

seq1  CCCCAACATGATACAAAAATGTATGAAAGTAACAGTTGATTTAATTCCCT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCCAACATGATACAAAAATGTATGAAAGTAACAGTTGATTTAATTCCCT  350

seq1  GCCTTTCTTCCCCTCAGCTGATCAGAAAGAAGCATGGGGCATTCTGGGAA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCTTTCTTCCCCTCAGCTGATCAGAAAGAAGCATGGGGCATTCTGGGAA  400

seq1  GCAAGAGCAACAATCACAGAGGGAAAAATTGTCCCATGATAATACACGGC  450
      ||||||||||||||||||||||||||||||||||||||| ||||||||||
seq2  GCAAGAGCAACAATCACAGAGGGAAAAATTGTCCCATGAAAATACACGGC  450

seq1  CAGCTATGCTCAGAAAGGACAAGTCTCTGCTGAGAAATGGAAACAGCGAC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGCTATGCTCAGAAAGGACAAGTCTCTGCTGAGAAATGGAAACAGCGAC  500

seq1  TCCTCACAGGAGTATCTTGCTACCTGGCACAGTTGGAGTGACACAGATAA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCTCACAGGAGTATCTTGCTACCTGGCACAGTTGGAGTGACACAGATAA  550

seq1  AGACCTGAGAATGTGTCCCCAGTGAGCTTCCTCCTCAGTCAGCTCCCCCT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGACCTGAGAATGTGTCCCCAGTGAGCTTCCTCCTCAGTCAGCTCCCCCT  600

seq1  CTTAGTGTCTCCAGAGTGATGTCAGCAAGCTAAGAGGCAAGAATGGCTGA  650
      ||||||||||||||||||||||||||||||||| |||||||| |||||||
seq2  CTTAGTGTCTCCAGAGTGATGTCAGCAAGCTAAAAGGCAAGATTGGCTGA  650

seq1  GACAGGCAGAGGGAATAAGAAGGCAAAGCGATCTTCAGAAAGACTAAGAC  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACAGGCAGAGGGAATAAGAAGGCAAAGCGATCTTCAGAAAGACTAAGAC  700

seq1  GTTGTATGTAGATGTCAACTCTCGTGCCTTAGCTGTGTGGCTGGACTGCT  750
      ||||||||| ||||| ||||||||||||||||||| ||||||||||||||
seq2  GTTGTATGTTGATGTTAACTCTCGTGCCTTAGCTGAGTGGCTGGACTGCT  750

seq1  CTACACCAGGACAGGTAGAACTCTGGCCTCTGAACACATTAGGCAAGCTC  800
      |||||||| ||||||||||||||||| |||||||||||||| || |||||
seq2  CTACACCATGACAGGTAGAACTCTGGACTCTGAACACATTAAGCCAGCTC  800

seq1  TTTCTAGCTGTCACTGTGTCTAGCCCTCTTACCAAAAAGAGCAGCTAGCA  850
      ||| |||||||||| | |||||||||||||||||||||||||| ||||||
seq2  TTTGTAGCTGTCACAGGGTCTAGCCCTCTTACCAAAAAGAGCATCTAGCA  850

seq1  GACTTTAGACTGCCAAGGGTGGTGGAAAAAAAGAACAGAAAGGTCAGATA  900
      ||||||| | || ||||||||||||||||||||| || | ||||||||||
seq2  GACTTTATATTGTCAAGGGTGGTGGAAAAAAAGATCATACAGGTCAGATA  900

seq1  ATGGTGTATATACAGAATGCTATCAAACATATT-CTATT-TCA-TAACGA  947
      |||||||||||||| |||||||||||||||||| ||||| ||| ||||||
seq2  ATGGTGTATATACATAATGCTATCAAACATATTCCTATTATCAGTAACGA  950

seq1  A-AACTGATA-TTCCCTAAG-CTCCTC-TCCCTCTA-TGACTGAA-AATA  991
      | |||||||| ||||||||| |||||| |||||||| |||||||| ||||
seq2  AGAACTGATATTTCCCTAAGCCTCCTCATCCCTCTATTGACTGAACAATA  1000

seq1  --TCCATTGCAATGT  1004
        || || |||||||
seq2  TCTCAATCGCAATGT  1015