BAC Information

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BAC

Clone NameB6Ng01-088K08
Chromosome6 (Build37)
Map Location 20,026,752 - 20,027,944
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC626180, Eif3s6-ps4
Downstream geneLOC100040838
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-088K08.bB6Ng01-088K08.g
ACCDH901444DH901445
length1,1751,227
definitionDH901444|Mus musculus domesticus DNA, BAC clone: B6Ng01-088K08, 5' end.DH901445|Mus musculus domesticus DNA, BAC clone: B6Ng01-088K08, 3' end.
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
gaattcaacttgttttcacccatcaccacttaaacagacaaaatgtttat
gtgaatcaatctaatttctgtatctatgttctttacaaagaagtgtttcc
tacagacaatacagcctaatgctttatcttagaaaatattctaaaatgtc
tctaaatatacagaaaacaaacaacaaagattataaaatttttatcatat
aaacaatttaaaaaattttaaaatgataaaaattctcatttttctatata
aatgggagtattcatggtttcaaagaatttgcttgggaggtcttacataa
gaaaatatcaagttaaatgcgataatctaaactcataaaatgaaattttg
ttcaaggagagtttcaactgtattacaatagcaaatgtaattatgtaata
gtctttatctgtcagagctaatatataactaatctagttagggtatagac
aagcaattttgtacttagcttatttgatgagcttatttgatgatttactg
aaccagtcatgaattacaggactactgctaaggtgtgagaatcaataaag
taaaaggaagacagaacgccaagaaacatgatataaacagagtagatatg
aatgacttccttcagagcatctgtttagagatatcatgctggttgaagaa
gaattaaattagattcaaatgtaagtgcgacaatttttagaatatgaact
gtcactcagtagacaagcttatgttacttgaatttgtagcagttgcactt
tttcttagactcaaagaggatttcaaaaataatcttttctccttactaac
tggttcttagttttgaaaggtagaaagaaattgttaattggtgtgtgagt
ctttgttgtcttataatgagaatttttcttattcatgaaagaatcagttg
atgtatttttccatgattggaagaatgcaagagttaaatgaatttatatt
atagtatacatttcacagtctttgtactaaggaattaacagcagaaaatt
acatactttcatataagtatgtcatttcaagctatttgaaaattaaagat
tctcatgctagcatgtacagaattccatgatatatggaggacagagcata
cctggaattatcaatggaatagtttacctttttggaatctatcacatatc
aattaggctaactgtacaataaatc
gaattcagtgtgcacaatgacagctgaaatgcccagcagtaaggagatgg
aacctgaagaaatagatctctaatagatagaaagggtccccactggatca
acccacttcaaatttttgacccagaattgttcctgtcttaaaaaaaaatg
cagggacaaaatgaagcagagactgaaaaaatgggcaacaggtgaccagc
ccaacttgtgatctgttccatggacaggaagcaaaccctgacactactac
tgatgctatgttttgcttgcacacagaagcctagcatggaaagtgtctgc
cagaagctgactgagatagatgcagatattttcagccaaccattggaatg
aggtcagggacccctatggaagagttatgggaaggtttgaaagagctgat
ggtttcctatggcaaatccataggatgaccaacaatgtcaactaacaaga
cccctaggagttcacagagactaatccaccaaccaaagagatcacatggg
tgatccatttcccagatacatatgtagcagaagactgtcttggtctcagt
aggagaggatgctcctaatactgtagagttgatgccccagggaaggggca
tgcaatggaagggagcaccctctcagaggccaaggggaggaggatggggt
aaacaactctgggaggggagaccaggagaggataacacttggatataaat
taataaaaataaacttgccttacctacctgtttccatggacttgctgctc
agtaaatcttgtctggaggtgtatcaccaagttagggacttaacagaatg
aatagaaagaaaggttggaagaaaagatctttgagatcttctggagtaga
tagcagaggtgagctagggagtacagcagtggaagctacagtactgaagt
tgatgcttaaggattggatttatagaagtaagtagaggtaaagattctga
ttctgctatatcttcttgaatagaattcctgtagagtcccagtaatgtct
gcttgttgggacacatataaaaatatgagatgagaagaaatttggatggg
atgctgtgtgatctttgagcttgagatgtggtatgtttaaggacaggcta
cctaaacaagtggtatagaatcggtagcttactggatgattgcatctaat
gctctatggaccttcgaacaggaccttaagagtgtgacaggcttatgtgc
agagattgtggatggtagatcattgcg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr6_20026752_20027944
seq2: B6Ng01-088K08.b_50_1224

seq1  GAATTCAACTTGTTTTCACCCATCACCACTTAAACAGACAAAATGTTTAT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCAACTTGTTTTCACCCATCACCACTTAAACAGACAAAATGTTTAT  50

seq1  GTGAATCAATCTAATTTCTGTATCTATGTTCTTTACAAAGAAGTGTTTCC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGAATCAATCTAATTTCTGTATCTATGTTCTTTACAAAGAAGTGTTTCC  100

seq1  TACAGACAATACAGCCTAATGCTTTATCTTAGAAAATATTCTAAAATGTC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACAGACAATACAGCCTAATGCTTTATCTTAGAAAATATTCTAAAATGTC  150

seq1  TCTAAATATACAGAAAACAAACAACAAAGATTATAAAATTTTTATCATAT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTAAATATACAGAAAACAAACAACAAAGATTATAAAATTTTTATCATAT  200

seq1  AAACAATTTAAAAAATTTTAAAATGATAAAAATTCTCATTTTTCTATATA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAACAATTTAAAAAATTTTAAAATGATAAAAATTCTCATTTTTCTATATA  250

seq1  AATGGGAGTATTCATGGTTTCAAAGAATTTGCTTGGGAGGTCTTACATAA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATGGGAGTATTCATGGTTTCAAAGAATTTGCTTGGGAGGTCTTACATAA  300

seq1  GAAAATATCAAGTTAAATGCGATAATCTAAACTCATAAAATGAAATTTTG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAAATATCAAGTTAAATGCGATAATCTAAACTCATAAAATGAAATTTTG  350

seq1  TTCAAGGAGAGTTTCAACTGTATTACAATAGCAAATGTAATTATGTAATA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCAAGGAGAGTTTCAACTGTATTACAATAGCAAATGTAATTATGTAATA  400

seq1  GTCTTTATCTGTCAGAGCTAATATATAACTAATCTAGTTAGGGTATAGAC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCTTTATCTGTCAGAGCTAATATATAACTAATCTAGTTAGGGTATAGAC  450

seq1  AAGCAATTTTGTACTTAGCTTATTTGATGAGCTTATTTGATGATTTACTG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGCAATTTTGTACTTAGCTTATTTGATGAGCTTATTTGATGATTTACTG  500

seq1  AACCAGTCATGAATTACAGGACTACTGCTAAGGTGTGAGAATCAATAAAG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACCAGTCATGAATTACAGGACTACTGCTAAGGTGTGAGAATCAATAAAG  550

seq1  TAAAAGGAAGACAGAACGCCAAGAAACATGATATAAACAGAGTAGATATG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAAAGGAAGACAGAACGCCAAGAAACATGATATAAACAGAGTAGATATG  600

seq1  AATGACTTCCTTCAGAGCATCTGTTTAGAGATATCATGCTGGTTGAAGAA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATGACTTCCTTCAGAGCATCTGTTTAGAGATATCATGCTGGTTGAAGAA  650

seq1  GAATTAAATTAGATTCAAATGTAAGTGCGACAATTTTTAGAATATGAACT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTAAATTAGATTCAAATGTAAGTGCGACAATTTTTAGAATATGAACT  700

seq1  GTCACTCAGTAGACAAGCTTATGTTACTTGAATTTGTAGCAGTTGCACTT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCACTCAGTAGACAAGCTTATGTTACTTGAATTTGTAGCAGTTGCACTT  750

seq1  TTTCTTAGACTCAAAGAGGATTTCAAAAATAATCTTTTCTCCTTACTAAC  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCTTAGACTCAAAGAGGATTTCAAAAATAATCTTTTCTCCTTACTAAC  800

seq1  TGGTTCTTAGTTTTGAAAGGTAGAAAGAAATTGTTAATTGGTGTGTGAGT  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGTTCTTAGTTTTGAAAGGTAGAAAGAAATTGTTAATTGGTGTGTGAGT  850

seq1  CTTTGTTGTCTTATAATGAGAATTTTTCTTATTCATGAAAGAATCAGTTG  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTGTTGTCTTATAATGAGAATTTTTCTTATTCATGAAAGAATCAGTTG  900

seq1  ATGTATTTTTCCATGATTGGAAGAATGCAAGAGTTAAAATGAATTTATAT  950
      ||||||||||||||||||||||||||||||||||| ||||||||||||||
seq2  ATGTATTTTTCCATGATTGGAAGAATGCAAGAGTT-AAATGAATTTATAT  949

seq1  TATAGTATACATTTCAACAGTCTTTGTACTAAGGAATTAACAGCAGAAAA  1000
      ||||||||||||||| ||||||||||||||||||||||||||||||||||
seq2  TATAGTATACATTTC-ACAGTCTTTGTACTAAGGAATTAACAGCAGAAAA  998

seq1  TTACATACTTTCAATATAAGTATGTCATTTCAAGCTATTTGAAAAATTAA  1050
      |||||||||||| |||||||||||||||||||||||||||| ||||||||
seq2  TTACATACTTTC-ATATAAGTATGTCATTTCAAGCTATTTG-AAAATTAA  1046

seq1  AGATTCTCATGCTAGCCATGTACAGAATTCCATGATATATGGAGGACAGA  1100
      ||||||||||||||| ||||||||||||||||||||||||||||||||||
seq2  AGATTCTCATGCTAG-CATGTACAGAATTCCATGATATATGGAGGACAGA  1095

seq1  GCCATTACCTTGATATTATCAATTGAATATGTTTAACCTTTTTTGACATC  1150
      ||   ||||| || ||||||||| ||||| |||| |||||||| || |||
seq2  GC--ATACCTGGA-ATTATCAATGGAATA-GTTT-ACCTTTTTGGA-ATC  1139

seq1  TAAATCACATAATCAATATAGCTAACATGTTACAATTAAAATC  1193
      |  ||||||| ||||||   |||||| || ||||||  |||||
seq2  T--ATCACAT-ATCAATTAGGCTAAC-TG-TACAAT--AAATC  1175