BAC Information

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BAC

Clone NameB6Ng01-088M18
Chromosome6 (Build37)
Map Location 128,933,557 - 129,127,814
singlet/doubletdoublet
Overlap geneClec2g, BC064078, Clec2f, Klrb1f, Clec2e, Klrb1-ps1
Upstream geneTspan9, LOC100043853, LOC667560, Tead4, LOC652986, Tulp3, 5930416I19Rik, Foxm1, Nrip2, Itfg2, Fkbp4, EG667598, Pzp, LOC384494, EG667610, BC048546, Klrb1a, EG545878, LOC677440, Clec2h, LOC100043863, LOC100043861, Klrb1c, LOC100043862, Klrb1d, LOC667706, Clec2i, LOC667715
Downstream geneClec2d, Cd69, 4922502D21Rik, Clec12a, 4933425B16Rik, Clec1b, Clec9a, Clec1a, Clec7a, Olr1, D630042F21Rik, Gabarapl1, Klre1, Klrd1, Klrk1, Klrc3, Klrc2, Klrc1, LOC640755, Klri1, Klri2, Gm156, Klra17, Klra5, LOC667764, Klra6, LOC100038893, LOC100038894, LOC100038895, Klra4, LOC667769, LOC100038897, Klra8, EG654449
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-088M18.bB6Ng01-088M18.g
ACCDH901554DH901555
length1,1121,114
definitionDH901554|Mus musculus domesticus DNA, BAC clone: B6Ng01-088M18, 5' end.DH901555|Mus musculus domesticus DNA, BAC clone: B6Ng01-088M18, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(128,933,557 - 128,934,666)(129,126,697 - 129,127,814)
sequence
gaattcttcttttgaatttatgagaccacaaaaatgagtcccccaacatg
ggtgtaacctttaataatgaaagcagaatggctgggatcctgagaagcat
ctgtaatcccaggtaccgaagggttgacacaggagggtctcaggttcacc
agtggggacggaaagcacaaaaacactttaataatgatagggaagatgag
atgtctgttgcatcccgtaatttgaagaaacatattatacatgcttttca
aaaattcaaaccaacatacagaagaatttttaaaaagtgtgtaaaattaa
gatttactttttactctgcaatttaaaaagatgagggacattggcgaaat
gtttctccactttaattttaatattcctatttccaattatactgttctaa
gtataattatacttacttacttttcctgttctaagtgtactgcattttat
aatcaaataccattttaatttcactattttattccaggagccttctggcc
caggccagtgtaatggtggagtctatatagaatcactacaagatagttca
tctttgtggatctgcagagatctgcttcaaagggggagtgtttctactca
gcaattgttatatatgtttaacaataacagtaaaagcacattaatagcag
gaatctctcctaaaacgagtcactcatagccttgcttaatgagggctcac
ctgtcacagattatataataatctgaggcaggccacttcaggatgatcac
ctgctagttattagcttgtctcattatgggtcctgaccatttttttggat
ttatttcacatcaaatgtgagttaaactccttaggcatttaatacttaat
tttacactagcatgtgcattactgagcctttaaaaaatattgaaaatctt
atagattgagctaccatgtactgatgagtcccaaaagagaaaaaatcata
ggctaaacgcagctcttggtctcttcatcctttcttctccttcttggtct
tttaaagactatatcaacttgataatgccaaggggggagttgatattcca
tgggaggcctccaggtctttaggagaaagggatggaggaaatggaggaag
gaaaaggggaga
gaattcatattctcacacttatgtggcaagcacttttctgactgagccat
cttcccaggctctgaagatgatccttaagaaaaatatatggaatatgatc
tttgccttttgagagaaatagttgtgtgcaaaagctgttaggacctattt
catgaactggccccagtctccattcttgcttgccaacatagtgaatggat
ctaaaatttgtgtgaaaagtgacatcttatgtgaagtgctaggattatgg
taatcgggctggttaaagaataaaaacttggaaggacatggaggcacaac
acctacaatccaggcactgaggaggtagaggcgggagatgtcacctgtac
tttacaaatgggaacagaagtggttaatagataataaggtgacctctgca
ctacctgaatgaccacaaccacaccagatccttcccagacccttaagatg
tcacatgtagtcaatatagaaaacccacctttatgaaagaactcacaagt
cctttgcaaagagttcaatgttgtcatgtcttaagctttattgtgcatga
agggttgagtttattgccactagaaaatgtttgtctaaaattgggctgtg
tttaaatatgcctaaaataatctttctggtatcagactctataagtctga
atcatcaccagctactgagttatgctaaactagaccttcatgcttcacat
gaatggttattctactgcttatggtggtcacagaaaacccacatgtagtt
tctctaataatcataatcataacaattacaatatattcatctctactttt
ctttagaataatctcaccttcatgaggcatactactcaaacaatggagcc
cagagctaacagacttgaaaaacactgaaagtaagtatttccattttaaa
tggcaagttgatatttctctgacactaaaccagagtccacgtcactaaac
agaaaacagactagtaagtcaacatcagacttaatgttaaatcaacaaag
gtgtgggctggtagttggccatggtaaaagaacacaatcaaatgctatgg
caaaataagtatctatctcactgtcgttccataaataacggctaacattc
attcacatatgttt
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr6_128933557_128934666
seq2: B6Ng01-088M18.b_45_1156

seq1  GAATTCTTCTTTTGAATTTATGAGACCACAAAAATGAGTCCCCCAACATG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTTCTTTTGAATTTATGAGACCACAAAAATGAGTCCCCCAACATG  50

seq1  GGTGTAACCTTTAATAATGAAAGCAGAATGGCTGGGATCCTGAGAAGCAT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTGTAACCTTTAATAATGAAAGCAGAATGGCTGGGATCCTGAGAAGCAT  100

seq1  CTGTAATCCCAGGTACCGAAGGGTTGACACAGGAGGGTCTCAGGTTCACC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGTAATCCCAGGTACCGAAGGGTTGACACAGGAGGGTCTCAGGTTCACC  150

seq1  AGTGGGGACGGAAAGCACAAAAACACTTTAATAATGATAGGGAAGATGAG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTGGGGACGGAAAGCACAAAAACACTTTAATAATGATAGGGAAGATGAG  200

seq1  ATGTCTGTTGCATCCCGTAATTTGAAGAAACATATTATACATGCTTTTCA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGTCTGTTGCATCCCGTAATTTGAAGAAACATATTATACATGCTTTTCA  250

seq1  AAAATTCAAACCAACATACAGAAGAATTTTTAAAAAGTGTGTAAAATTAA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAATTCAAACCAACATACAGAAGAATTTTTAAAAAGTGTGTAAAATTAA  300

seq1  GATTTACTTTTTACTCTGCAATTTAAAAAGATGAGGGACATTGGCGAAAT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATTTACTTTTTACTCTGCAATTTAAAAAGATGAGGGACATTGGCGAAAT  350

seq1  GTTTCTCCACTTTAATTTTAATATTCCTATTTCCAATTATACTGTTCTAA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTTCTCCACTTTAATTTTAATATTCCTATTTCCAATTATACTGTTCTAA  400

seq1  GTATAATTATACTTACTTACTTTTCCTGTTCTAAGTGTACTGCATTTTAT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTATAATTATACTTACTTACTTTTCCTGTTCTAAGTGTACTGCATTTTAT  450

seq1  AATCAAATACCATTTTAATTTCACTATTTTATTCCAGGAGCCTTCTGGCC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATCAAATACCATTTTAATTTCACTATTTTATTCCAGGAGCCTTCTGGCC  500

seq1  CAGGCCAGTGTAATGGTGGAGTCTATATAGAATCACTACAAGATAGTTCA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGGCCAGTGTAATGGTGGAGTCTATATAGAATCACTACAAGATAGTTCA  550

seq1  TCTTTGTGGATCTGCAGAGATCTGCTTCAAAGGGGGAGTGTTTCTACTCA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTTGTGGATCTGCAGAGATCTGCTTCAAAGGGGGAGTGTTTCTACTCA  600

seq1  GCAATTGTTATATATGTTTAACAATAACAGTAAAAGCACATTAATAGCAG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAATTGTTATATATGTTTAACAATAACAGTAAAAGCACATTAATAGCAG  650

seq1  GAATCTCTCCTAAAACGAGTCACTCATAGCCTTGCTTAATGAGGGCTCAC  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATCTCTCCTAAAACGAGTCACTCATAGCCTTGCTTAATGAGGGCTCAC  700

seq1  CTGTCACAGATTATATAATAATCTGAGGCAGGCCACTTCAGGATGATCAC  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGTCACAGATTATATAATAATCTGAGGCAGGCCACTTCAGGATGATCAC  750

seq1  CTGCTAGTTATTAGCTTGTCTCATTATGGGTCCTGACCATTTTTTTGGAT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGCTAGTTATTAGCTTGTCTCATTATGGGTCCTGACCATTTTTTTGGAT  800

seq1  TTATTTCACATCAAATGTGAGTTAAACTCCTTAGGCATTTAATACTTAAT  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTATTTCACATCAAATGTGAGTTAAACTCCTTAGGCATTTAATACTTAAT  850

seq1  TTTACACTAGCATGTGCATTACTGAGCCTTTAAAAAAATATTGAAAATCT  900
      ||||||||||||||||||||||||||||||| ||||||||||||||||||
seq2  TTTACACTAGCATGTGCATTACTGAGCCTTT-AAAAAATATTGAAAATCT  899

seq1  TATAGATTGAGCTACCATGTACTGATGAGTCCCAAAAGAGAAAAAATCAT  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATAGATTGAGCTACCATGTACTGATGAGTCCCAAAAGAGAAAAAATCAT  949

seq1  AGGCTAAACGCAGCTCTTGGTCTCTTCATCCTTTCTTCTCCTTCTTGGTC  1000
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGCTAAACGCAGCTCTTGGTCTCTTCATCCTTTCTTCTCCTTCTTGGTC  999

seq1  TTTTTAAAGACTATATCAACTTGAT-ATGCCAA-GGGGGAGTTGATA-TC  1047
       |||||||||||||||||||||||| ||||||| ||||||||||||| ||
seq2  -TTTTAAAGACTATATCAACTTGATAATGCCAAGGGGGGAGTTGATATTC  1048

seq1  CATGGGAGGCCTCCAGGTCTTTAAGGAGAAAGGGATGGA-GAAATGGAGG  1096
      |||||||||||||||||||||| |||||||||||||||| ||||||||||
seq2  CATGGGAGGCCTCCAGGTCTTT-AGGAGAAAGGGATGGAGGAAATGGAGG  1097

seq1  AAGG-GAAGGGGAGA  1110
      ||||  |||||||||
seq2  AAGGAAAAGGGGAGA  1112

seq1: chr6_129126697_129127814
seq2: B6Ng01-088M18.g_69_1182 (reverse)

seq1  AAACATATGTGAATGGATGTTAGCTGTTTATATATGGACTGACAGTGAG-  49
      ||||||||||||||| |||||||| | |||| ||||||  ||||||||| 
seq2  AAACATATGTGAATGAATGTTAGCCG-TTATTTATGGAACGACAGTGAGA  49

seq1  TAGATAACCTTATTTTGCCATAGCATTTGA-TGTGTTCTATTTACCATGG  98
      ||||||  |||||||||||||||||||||| |||||||| ||||||||||
seq2  TAGATA--CTTATTTTGCCATAGCATTTGATTGTGTTCT-TTTACCATGG  96

seq1  CCAACTACCAGCCCACACCTTTGTTGATTTAACATTAAGTCTGATGTTGA  148
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAACTACCAGCCCACACCTTTGTTGATTTAACATTAAGTCTGATGTTGA  146

seq1  CTTACTAGTCTGTTTTCTGTTTAGTGACGTGGACTCTGGTTTAGTTGTCA  198
      |||||||||||||||||||||||||||||||||||||||||||| |||||
seq2  CTTACTAGTCTGTTTTCTGTTTAGTGACGTGGACTCTGGTTTAG-TGTCA  195

seq1  GAGAAATATCAACTTGCCATTTAAAATGGAAATACTTACTTTCAGTGTTT  248
      ||||||||||||||||||||||||||||||||||||||||||||||| ||
seq2  GAGAAATATCAACTTGCCATTTAAAATGGAAATACTTACTTTCAGTG-TT  244

seq1  TTTCAAGTCTGTTAGCTCTGGGCTCCATTGTTTGAGTAGTATGCCTCATG  298
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCAAGTCTGTTAGCTCTGGGCTCCATTGTTTGAGTAGTATGCCTCATG  294

seq1  AAGGTGAGATTATTCTAAAGAAAAGTAGAGATGAATATATTGTAATTGTT  348
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGGTGAGATTATTCTAAAGAAAAGTAGAGATGAATATATTGTAATTGTT  344

seq1  ATGATTATGATTATTAGAGAAACTACATGTGGGTTTTCTGTGACCACCAT  398
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGATTATGATTATTAGAGAAACTACATGTGGGTTTTCTGTGACCACCAT  394

seq1  AAGCAGTAGAATAACCATTCATGTGAAGCATGAAGGTCTAGTTTAGCATA  448
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGCAGTAGAATAACCATTCATGTGAAGCATGAAGGTCTAGTTTAGCATA  444

seq1  ACTCAGTAGCTGGTGATGATTCAGACTTATAGAGTCTGATACCAGAAAGA  498
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTCAGTAGCTGGTGATGATTCAGACTTATAGAGTCTGATACCAGAAAGA  494

seq1  TTATTTTAGGCATATTTAAACACAGCCCAATTTTAGACAAACATTTTCTA  548
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTATTTTAGGCATATTTAAACACAGCCCAATTTTAGACAAACATTTTCTA  544

seq1  GTGGCAATAAACTCAACCCTTCATGCACAATAAAGCTTAAGACATGACAA  598
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGGCAATAAACTCAACCCTTCATGCACAATAAAGCTTAAGACATGACAA  594

seq1  CATTGAACTCTTTGCAAAGGACTTGTGAGTTCTTTCATAAAGGTGGGTTT  648
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATTGAACTCTTTGCAAAGGACTTGTGAGTTCTTTCATAAAGGTGGGTTT  644

seq1  TCTATATTGACTACATGTGACATCTTAAGGGTCTGGGAAGGATCTGGTGT  698
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTATATTGACTACATGTGACATCTTAAGGGTCTGGGAAGGATCTGGTGT  694

seq1  GGTTGTGGTCATTCAGGTAGTGCAGAGGTCACCTTATTATCTATTAACCA  748
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTTGTGGTCATTCAGGTAGTGCAGAGGTCACCTTATTATCTATTAACCA  744

seq1  CTTCTGTTCCCATTTGTAAAGTACAGGTGACATCTCCCGCCTCTACCTCC  798
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTCTGTTCCCATTTGTAAAGTACAGGTGACATCTCCCGCCTCTACCTCC  794

seq1  TCAGTGCCTGGATTGTAGGTGTTGTGCCTCCATGTCCTTCCAAGTTTTTA  848
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAGTGCCTGGATTGTAGGTGTTGTGCCTCCATGTCCTTCCAAGTTTTTA  844

seq1  TTCTTTAACCAGCCCGATTACCATAATCCTAGCACTTCACATAAGATGTC  898
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTTTAACCAGCCCGATTACCATAATCCTAGCACTTCACATAAGATGTC  894

seq1  ACTTTTCACACAAATTTTAGATCCATTCACTATGTTGGCAAGCAAGAATG  948
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTTTTCACACAAATTTTAGATCCATTCACTATGTTGGCAAGCAAGAATG  944

seq1  GAGACTGGGGCCAGTTCATGAAATAGGTCCTAACAGCTTTTGCACACAAC  998
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGACTGGGGCCAGTTCATGAAATAGGTCCTAACAGCTTTTGCACACAAC  994

seq1  TATTTCTCTCAAAAGGCAAAGATCATATTCCATATATTTTTCTTAAGGAT  1048
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTTCTCTCAAAAGGCAAAGATCATATTCCATATATTTTTCTTAAGGAT  1044

seq1  CATCTTCAGAGCCTGGGAAGATGGCTCAGTCAGAAAAGTGCTTGCCACAT  1098
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATCTTCAGAGCCTGGGAAGATGGCTCAGTCAGAAAAGTGCTTGCCACAT  1094

seq1  AAGTGTGAGAATATGAATTC  1118
      ||||||||||||||||||||
seq2  AAGTGTGAGAATATGAATTC  1114