BAC Information

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BAC

Clone NameB6Ng01-088O02
Chromosome6 (Build37)11 (Build37)
Map Location 5,433,050 - 5,434,31673,217,556 - 73,218,062
singlet/doubletsingletsinglet
Overlap genePdk4
Upstream geneCol1a2, Casd1, Sgce, Peg10, LOC100040018, Ppp1r9a, Pon1, Pon3, Pon2, Asb4
Downstream geneDync1i1, Slc25a13, EG667462, EG667468, LOC667471, LOC100040096
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-088O02.bB6Ng01-088O02.g
ACCDH901614DH901615
length1,186984
definitionDH901614|Mus musculus domesticus DNA, BAC clone: B6Ng01-088O02, 5' end.DH901615|Mus musculus domesticus DNA, BAC clone: B6Ng01-088O02, 3' end.
singlet/doubletsingletsinglet
BLAST hituniqueunique
Map location.(5,433,050 - 5,434,316)(73,217,556 - 73,218,062)
sequence
gaattctaggaaacgtgcattgccaagcagttactgaataaatacttgta
ggtaaacatgtttagttctatttgttcatggagcatatacaaacaagaaa
aagacaaccacaatttctgtactactctaaaacacttttgttttaaaaat
aggatgttaaagttgcttttaatacttttcaaagcctatgccaaatgtgt
agatgagttatatctaaagaaaaatatgaggaccgcctttagttgatatc
gttcattatactttgagattattcaagaaaagaattttataagaccacat
tactattataataaaaatatttattataaaattatcacaattctttgcat
ataaactaaaaacataaatgtaattcacacattaataagttaagtgggcc
tgggcatttagcatctatctacaagagtttaaagtctcccatgggttcat
aaataatagggaaggctattttgatttgatttacacaggtgacactattg
agaccctaaagcttttctctattactttacgcacagttcaggatatttgg
gttaagtaaccaaatgccttagacctttggtaaacacaagtaagtattca
tgtgcacaaactcagagctgaaatttcaatggaaacatcagcaacaaaac
aactatacatcagattacccaaatgctgacagttttgtgtgatcaaccaa
tgtgggagtcaaagtcctgctgtgaaagtcactgccctgatcttttaagg
acaacatctacaatgcaaaaaagaaaaagaaacagaaaaaagaaaagaag
agaagagaaaagaaaaggaaaggaagaaagaaggaaggaggaaggaagga
aggaaggaatgaaggaggaaagaagaagaagaagaagaagaagaaagaaa
gaagaagacgaagaagaagaatactgtgctctatgcacaccggagcacct
tagctctagtcactgtgaattaatacaatttcaactcactgcgactcagc
ctcatatatacatgcagaaaaattcacatatttgaacgattatcattcac
tgtctagtagagggagaccccgaagagcatactgcttcatctacagtcat
ccctttcctcccaggagccagacatccttggtaggctgggtattgatgat
gcagctcgtccttctgctccctctccattgcttccc
gaattcagagatctgctggactgttaaccacagagggataagctatcaag
ggtgggaaaattaccatttctaccacacctagacttaaattagctctgtc
ccaagctgaccttgaactcaggaatcttcctgcatttttatctgcctgtc
tttgtatatctttctatcctgtccctcgggattcagttatcgtgggtgcg
agggggacggcaaacagtaaggaaatgggattggaagagaaaagagaagc
ggatgactaagtagattgcacctatcaaggtctctgtctattaggctgag
gtgcctggttttaaagcatacatcttggggaatagggaggggtcgagggg
gaattttacaaagaacaaagaagtgggcatctgctgacatgagggccgaa
gtcaggcttcagaaggcgggtactctgcatcttatctccagaacatagat
cctccttaacagctttgagatgtcaggccaggctcagcgcgtaactcatg
tccttggaagtcatgagagtcaggaagagataggaaaaaggggactacaa
ttcagcttttacagcctcaggtgccaggaagggaacagggaggagggagt
gacaaccagctcctagcatgaggccattaggcctgtcagggtgggagatt
gtgaagggctctctttctcacggtatggtctctgacatctttctaactgg
ctcaaagtagagctgcctctgttcctttagttatgtaaagcctcttatac
aactcatgatccatccttatatttttgcgtatttgagaaattgtttattt
ttgaactaatgtttttaggctaatgttttaagacttttccacagatgtaa
ggggctgtcctaaaagttccaacagttaccatttttctaagacatgtgct
ataccttcacttcctggacttatgctatctgtgattagcatagagttaac
agagaggactgtaaatatatacattattaaacaa
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr6_5433050_5434316
seq2: B6Ng01-088O02.b_44_1229

seq1  GAATTCTAGGAAACGTGCATTGCCAAGCAGTTACTGAATAAATACTTGTA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTAGGAAACGTGCATTGCCAAGCAGTTACTGAATAAATACTTGTA  50

seq1  GGTAAACATGTTTAGTTCTATTTGTTCATGGAGCATATACAAACAAGAAA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTAAACATGTTTAGTTCTATTTGTTCATGGAGCATATACAAACAAGAAA  100

seq1  AAGACAACCACAATTTCTGTACTACTCTAAAACACTTTTGTTTTAAAAAT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGACAACCACAATTTCTGTACTACTCTAAAACACTTTTGTTTTAAAAAT  150

seq1  AGGATGTTAAAGTTGCTTTTAATACTTTTCAAAGCCTATGCCAAATGTGT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGATGTTAAAGTTGCTTTTAATACTTTTCAAAGCCTATGCCAAATGTGT  200

seq1  AGATGAGTTATATCTAAAGAAAAATATGAGGACCGCCTTTAGTTGATATC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGATGAGTTATATCTAAAGAAAAATATGAGGACCGCCTTTAGTTGATATC  250

seq1  GTTCATTATACTTTGAGATTATTCAAGAAAAGAATTTTATAAGACCACAT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTCATTATACTTTGAGATTATTCAAGAAAAGAATTTTATAAGACCACAT  300

seq1  TACTATTATAATAAAAATATTTATTATAAAATTATCACAATTCTTTGCAT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACTATTATAATAAAAATATTTATTATAAAATTATCACAATTCTTTGCAT  350

seq1  ATAAACTAAAAACATAAATGTAATTCACACATTAATAAGTTAAGTGGGCC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAAACTAAAAACATAAATGTAATTCACACATTAATAAGTTAAGTGGGCC  400

seq1  TGGGCATTTAGCATCTATCTACAAGAGTTTAAAGTCTCCCATGGGTTCAT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGGCATTTAGCATCTATCTACAAGAGTTTAAAGTCTCCCATGGGTTCAT  450

seq1  AAATAATAGGGAAGGCTATTTTGATTTGATTTACACAGGTGACACTATTG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATAATAGGGAAGGCTATTTTGATTTGATTTACACAGGTGACACTATTG  500

seq1  AGACCCTAAAGCTTTTCTCTATTACTTTACGCACAGTTCAGGATATTTGG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGACCCTAAAGCTTTTCTCTATTACTTTACGCACAGTTCAGGATATTTGG  550

seq1  GTTAAGTAACCAAATGCCTTAGACCTTTGGTAAACACAAGTAAGTATTCA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTAAGTAACCAAATGCCTTAGACCTTTGGTAAACACAAGTAAGTATTCA  600

seq1  TGTGCACAAACTCAGAGCTGAAATTTCAATGGAAACATCAGCAACAAAAC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGCACAAACTCAGAGCTGAAATTTCAATGGAAACATCAGCAACAAAAC  650

seq1  AACTATACATCAGATTACCCAAATGCTGACAGTTTTGTGTGATCAACCAA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACTATACATCAGATTACCCAAATGCTGACAGTTTTGTGTGATCAACCAA  700

seq1  TGTGGGAGTCAAAGTCCTGCTGTGAAAGTCACTGCCCTGATCTTTTAAGG  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGGGAGTCAAAGTCCTGCTGTGAAAGTCACTGCCCTGATCTTTTAAGG  750

seq1  ACAACATCTACAATGCAAAAAAAGAAAAAGAAACAGAAAAAAGAAAAGAA  800
      |||||||||||||||| |||||||||||||||||||||||||||||||||
seq2  ACAACATCTACAATGC-AAAAAAGAAAAAGAAACAGAAAAAAGAAAAGAA  799

seq1  GAGAAGAGAAAAGAAAAGGAAAGGAAGAAGGAAGGAAGGAAGGAAGGAAG  850
      ||||||||||||||||||||||||||||| ||||||||| ||||||||||
seq2  GAGAAGAGAAAAGAAAAGGAAAGGAAGAAAGAAGGAAGG-AGGAAGGAAG  848

seq1  GAAGGAAGGAAGGAAGGAAGGAAAGAAAGAAAGAAAGAAAGAAAGAAAGA  900
      ||||||||||| ||||| ||||||| |||||   |||||   |||||   
seq2  GAAGGAAGGAATGAAGG-AGGAAAG-AAGAA--GAAGAA--GAAGAA--G  890

seq1  AAGAAAGAAAGAAAGAAAGAACGAAAGAAAGAAAGAAAATACTTGTGGCT  950
      ||||||||||| |||||   |||     |||||  | ||||| ||| |||
seq2  AAGAAAGAAAG-AAGAA--GACG-----AAGAAGAAGAATAC-TGT-GCT  930

seq1  CCTATTGCCACAACCGGGAGCACCTTAGCTCTAGGTCACTGTGAAATTAA  1000
       ||||   ||||  | ||||||||||||||||| |||||||||||  | |
seq2  -CTAT--GCACA--CCGGAGCACCTTAGCTCTA-GTCACTGTGAA--TTA  972

seq1  ATACAAATTTCAAACTCAACTGCGACTCAGGCCTCATAATATTACAATGC  1050
      |||| |||||| ||||| ||||||||||| ||||||| ||| ||| ||||
seq2  ATAC-AATTTC-AACTC-ACTGCGACTCA-GCCTCAT-ATA-TAC-ATGC  1015

seq1  AGGAAAAAAATTTCACATTAATTTGACACGAATTATCATTTCACCTTGTC  1100
      ||    |||| |||||||  |||||| ||| ||||||| |||||  ||||
seq2  AG----AAAAATTCACAT--ATTTGA-ACG-ATTATCA-TTCAC--TGTC  1054

seq1  TAGTAAGAGGGAGACCCACAGAAGAAGCCATACTGCTTTCAAATCTACCA  1150
      |||| |||||||||||  | |||||   ||||||||||    ||||| ||
seq2  TAGT-AGAGGGAGACC--CCGAAGA--GCATACTGCTT---CATCTA-CA  1095

seq1  GTTCATCCCCTTCCCTCCCCAGGAAAGGCACAGAGCATCCCTTGGGTTAG  1200
      | ||||||| ||||   |||||||   || |||| ||| ||||||  |||
seq2  G-TCATCCCTTTCC--TCCCAGGA---GC-CAGA-CAT-CCTTGG--TAG  1134

seq1  CCTGTGGGAAATAGGATGATGCCAGCCTTCTGGTTCCTTTCTTGCTTCCC  1250
       |  |||| | |  ||||||| ||||  ||    |||||     || | |
seq2  GC--TGGGTATT--GATGATG-CAGC--TC---GTCCTT-----CTGCTC  1169

seq1  TCTCTCCATTGCTTCCC  1267
       ||||||||||||||||
seq2  CCTCTCCATTGCTTCCC  1186

seq1: chr11_73217556_73218062
seq2: B6Ng01-088O02.g_242_752

seq1  CGGGATTCAGTTATTCGTGGGTGCGAGGGGGACCGCAAATTTGTAAGGAT  50
      ||||||||||||| ||||||||||||||||||| |||||   ||||||| 
seq2  CGGGATTCAGTTA-TCGTGGGTGCGAGGGGGACGGCAAA-CAGTAAGGAA  48

seq1  ATGGGATTGGAAGAG-AAAGAAAAGC--ACGACCAAGTAGATTGTACCTA  97
      ||||||||||||||| ||||| ||||  | ||| |||||||||| |||||
seq2  ATGGGATTGGAAGAGAAAAGAGAAGCGGATGACTAAGTAGATTGCACCTA  98

seq1  TCAAGGTCTCCTTTTATTAGGCTGAGGTGCCTTGTTTTAAAGCATACATC  147
      ||||||||||  | |||||||||||||||||| |||||||||||||||||
seq2  TCAAGGTCTCTGTCTATTAGGCTGAGGTGCCTGGTTTTAAAGCATACATC  148

seq1  TCGGGGAACAGAGAGGGGTCTAGGGGGAATTTTAACAAAGAACAAAGAAG  197
      | |||||| || |||||||| |||||||||||| ||||||||||||||||
seq2  TTGGGGAATAGGGAGGGGTCGAGGGGGAATTTT-ACAAAGAACAAAGAAG  197

seq1  TGGGCATCTGCTGACATGAGGGCCGAAGTCAGGCTCCAGGTGGCGGGCAC  247
      ||||||||||||||||||||||||||||||||||| |||  |||||| ||
seq2  TGGGCATCTGCTGACATGAGGGCCGAAGTCAGGCTTCAGAAGGCGGGTAC  247

seq1  TCTGCATATTATCTCCAGAACATAGATTCTCCTTGACAGCCTTGGGGTGT  297
      ||||||| ||||||||||||||||||| |||||| ||||| ||| | |||
seq2  TCTGCATCTTATCTCCAGAACATAGATCCTCCTTAACAGCTTTGAGATGT  297

seq1  CAGGCCGGGTTCAG-GCGTAACTCATGTCCTTGGATGGCATGAGAGTTCA  346
      |||||| || |||| |||||||||||||||||||| | |||||||| |||
seq2  CAGGCCAGGCTCAGCGCGTAACTCATGTCCTTGGAAGTCATGAGAG-TCA  346

seq1  GGAAGAGATAGGGAAGAGGGGACTATAATTCAGCTTTTACAGCCTTAGGT  396
      |||||||||||| || ||||||||| ||||||||||||||||||| ||||
seq2  GGAAGAGATAGGAAAAAGGGGACTACAATTCAGCTTTTACAGCCTCAGGT  396

seq1  GCCAGGAAGGGAATAGGGAGGAGGGAGTGATAACCAGCTCCTAGCACGAG  446
      ||||||||||||| |||||||||||||||| ||||||||||||||| |||
seq2  GCCAGGAAGGGAACAGGGAGGAGGGAGTGACAACCAGCTCCTAGCATGAG  446

seq1  GCCATTTGGTCTGTCA----GGGAGATTGTGAAGGGCTCGCTTTCTCACG  492
      |||||| || ||||||    ||||||||||||||||||| ||||||||||
seq2  GCCATTAGGCCTGTCAGGGTGGGAGATTGTGAAGGGCTCTCTTTCTCACG  496

seq1  GTATTGTCTCTGACA  507
      |||| ||||||||||
seq2  GTATGGTCTCTGACA  511