BAC Information

Click to search

BAC

Clone NameB6Ng01-088O08
Chromosome6 (Build37)
Map Location 12,777,126 - 12,895,049
singlet/doubletdoublet
Overlap geneLOC667735
Upstream geneNdufa4, Phf14, LOC100040844, EG625347, LOC435879, Thsd7a
Downstream geneLOC384350, Tmem106b, Gm467, Gm725, 1700016P04Rik, LOC100040478, Tmem168, B630005N14Rik, Gpr85, 2610001J05Rik
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-088O08.bB6Ng01-088O08.g
ACCDH901623DH901624
length1,1011,121
definitionDH901623|Mus musculus domesticus DNA, BAC clone: B6Ng01-088O08, 5' end.DH901624|Mus musculus domesticus DNA, BAC clone: B6Ng01-088O08, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(12,777,126 - 12,778,167)(12,893,916 - 12,895,049)
sequence
gaattctctgtaagagaatctcaaatggctaagaaacacttaaggaaatg
tacaacagccttagccaccaggaaaatgaaaatgaaaactactttgagat
tttatcttatacttgttagacggataagatcaataatccaagtgacatgc
aatgggaaaggatttggagcaaggagacacttttctattgctgatgaaag
tacaaacttgtccaatcactacagaaatcaacatggtggttcctcagaaa
attcatctacctcaaaacccagctatacaactcttggcatagacccaaaa
gacacttcaacctaacacaaagatatttgctcaacaaattcattttatat
ttattcatgatggccagaaactagaagcaacctagatgtctcaattacag
aatgagttttttaaaaagagtggtattttacacagtggaatattactcag
gtgttttaaaaaatgacctcatgaaaatttcaggcaaatgaaactagagt
gaggtaactgagtcacagaaagataaacacaatatatactcacttataag
tatatattacctactagtaaacacttgtcatgaaaacattctatttattt
tgtctttaagatagatactttgaaaagagtcataagaaagacagcacaag
gctgtccttctaaccagtttatacatgactgtgggatggaatgctctgtg
ccagtttttactgtaattattttaattactcgggtcctgttcacaggaca
cgtaggaaatcaatggccaaaaaaggaaaatacaaaagaaaacatctttt
attggtgctttagagagagaatttttaaagactttcaaatcagccagctg
ttcaaataaataatgcatgctgcagctggctcttacatgggcctgagtgt
ccaatagcagcagatgtcctgattctataaatgtgctcatacaggcaggt
cctaaattgactttgaaacaactgtgacgtaagctcacaagtgaacatat
tttatagaaatcatagatgagtaaattttttctaatttttctatagcgtc
agagtaactatgtttagagaaagataaaatacttccacagtcttcagagt
g
gaattcacatgcccttgaaagcatccttgattagagatagcttctaatgt
gatgaggattctgagcagatccagaaggtatttgtcatggcattttcact
tctttaaatcatctttttttctttcttgtagaaaattgatcagaaggtta
ttcgtgatccaaagtcctctctgttttcctagctgcatgctctcgtcttt
gttcttcttttttaataactcaagtgatgggaaccacagtaggattgtgt
ccacagtgaccgtcaataatggaatacagtttcctagtcatctcccatga
gctcctagagatcttcagccagcttccacatttcatatattcagagaaca
aaagttcatagcataatagagataagttttaactctccaacatgactatg
agataattatttctgttatattaatgtagctttaacgtggcagatggttt
acattcaaatgagccttttctagtatgttggattctttataagttttcac
ctccatgtagtcaataatgctataaagtttcaaaataactgaccctcaaa
ttctaatattgaccatagttccaaggtattcaatattaaactttcagacc
aatcagtctttatattgaacaaaacaatgttattaatgcatattagttta
tagcatgagttgtgctcataagtagaaaggtatagtcatttatattatct
gatatttgagatatttaggttaatttttatattattttcactattaaaat
ttatttcactagcagaaccatctgccaccaacctattaagtgaattcaat
catgtaccagtgtgtctagaatgatatatggtacataaagggctcattaa
atatattgtttgcttctggtgttacattcaaaatgaagacattaatattc
attaactctacttcatatattctctctctaagagagagagagagagggag
agagagagagagagagagagagagagcatttgatgaaaatgataattgat
ccggaatcaaggtcaaagctgctttattatttgggaagactgcttttagt
aggagtacattggaagtactagttggggcatgtgatttgctagagcattg
atacctcaaggactaaatact
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr6_12777126_12778167
seq2: B6Ng01-088O08.b_119_1148

seq1  GAAAATGAAAATGAAAACTACTTTGAGATTTTATCTTATACTTGTTAGAC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAAATGAAAATGAAAACTACTTTGAGATTTTATCTTATACTTGTTAGAC  50

seq1  GGATAAGATCAATAATCCAAGTGACATGCAATGGGAAAGGATTTGGAGCA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGATAAGATCAATAATCCAAGTGACATGCAATGGGAAAGGATTTGGAGCA  100

seq1  AGGAGACACTTTTCTATTGCTGATGAAAGTACAAACTTGTCCAATCACTA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGAGACACTTTTCTATTGCTGATGAAAGTACAAACTTGTCCAATCACTA  150

seq1  CAGAAATCAACATGGTGGTTCCTCAGAAAATTCATCTACCTCAAAACCCA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGAAATCAACATGGTGGTTCCTCAGAAAATTCATCTACCTCAAAACCCA  200

seq1  GCTATACAACTCTTGGCATAGACCCAAAAGACACTTCAACCTAACACAAA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTATACAACTCTTGGCATAGACCCAAAAGACACTTCAACCTAACACAAA  250

seq1  GATATTTGCTCAACAAATTCATTTTATATTTATTCATGATGGCCAGAAAC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATATTTGCTCAACAAATTCATTTTATATTTATTCATGATGGCCAGAAAC  300

seq1  TAGAAGCAACCTAGATGTCTCAATTACAGAATGAGTTTTTTAAAAAGAGT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGAAGCAACCTAGATGTCTCAATTACAGAATGAGTTTTTTAAAAAGAGT  350

seq1  GGTATTTTACACAGTGGAATATTACTCAGGTGTTTTAAAAAATGACCTCA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTATTTTACACAGTGGAATATTACTCAGGTGTTTTAAAAAATGACCTCA  400

seq1  TGAAAATTTCAGGCAAATGAAACTAGAGTGAGGTAACTGAGTCACAGAAA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAAAATTTCAGGCAAATGAAACTAGAGTGAGGTAACTGAGTCACAGAAA  450

seq1  GATAAACACAATATATACTCACTTATAAGTATATATTACCTACTAGTAAA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATAAACACAATATATACTCACTTATAAGTATATATTACCTACTAGTAAA  500

seq1  CACTTGTCATGAAAACATTCTATTTATTTTGTCTTTAAGATAGATACTTT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACTTGTCATGAAAACATTCTATTTATTTTGTCTTTAAGATAGATACTTT  550

seq1  GAAAAGAGTCATAAGAAAGACAGCACAAGGCTGTCCTTCTAACCAGTTTA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAAAGAGTCATAAGAAAGACAGCACAAGGCTGTCCTTCTAACCAGTTTA  600

seq1  TACATGACTGTGGGATGGAATGCTCTGTGCCAGTTTTTACTGTAATTATT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACATGACTGTGGGATGGAATGCTCTGTGCCAGTTTTTACTGTAATTATT  650

seq1  TTAATTACTCGGGTCCTGTTCACAGGACACGTAGGAAATCAATGGCCAAA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAATTACTCGGGTCCTGTTCACAGGACACGTAGGAAATCAATGGCCAAA  700

seq1  AAAGGAAAATACAAAAGAAAACATCTTTTATTGGTGCTTTAGAGAGAGAA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGGAAAATACAAAAGAAAACATCTTTTATTGGTGCTTTAGAGAGAGAA  750

seq1  TTTTTAAAGACTTTCAAATCAGCCAGCTGTTCAAATAAATAATGCATGCT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTTAAAGACTTTCAAATCAGCCAGCTGTTCAAATAAATAATGCATGCT  800

seq1  GCAGCTGGCTCTTACATGGGCCTGAGTGTCCAATAGCAGCAGATGTCCTG  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAGCTGGCTCTTACATGGGCCTGAGTGTCCAATAGCAGCAGATGTCCTG  850

seq1  ATTCTATAAATGTGCTCATACAGGCAGGTCCTAAATTGACTTTGAAACAC  900
      ||||||||||||||||||||||||||||||||||||||||||||||||| 
seq2  ATTCTATAAATGTGCTCATACAGGCAGGTCCTAAATTGACTTTGAAACA-  899

seq1  ACTGTGACGTAAGCTCACAAGTGAACATTATTTTTATAGAAATCATAGAT  950
      ||||||||||||||||||||||||||||   |||||||||||||||||| 
seq2  ACTGTGACGTAAGCTCACAAGTGAACAT--ATTTTATAGAAATCATAGA-  946

seq1  TGAGTAAATTTTTTCTAAATATTTCTATAGGCGTCAGAGTAAACTATGTT  1000
      |||||||||||||||| ||| |||||||| |||||||||| ||||||| |
seq2  TGAGTAAATTTTTTCT-AATTTTTCTATA-GCGTCAGAGT-AACTATG-T  992

seq1  TTAGAGAAAAGATTAAAAAATAC-TCCACAGTCTCAAAGAGTG  1042
      |||||| ||||||   ||||||| ||||||||||   ||||||
seq2  TTAGAG-AAAGAT---AAAATACTTCCACAGTCT-TCAGAGTG  1030

seq1: chr6_12893916_12895049
seq2: B6Ng01-088O08.g_69_1189 (reverse)

seq1  AGTA-TTAGTTCTTGA-GTATCAAATGCTCTTGCCAAATCACAATTGCCC  48
      |||| ||||| ||||| ||||| |||||||| | |||||||| ||  |||
seq2  AGTATTTAGTCCTTGAGGTATC-AATGCTCTAG-CAAATCAC-ATGCCCC  47

seq1  AACTTGTAACTTCCAATGCTACTCCTTACTAAAAAGGCAAGTC-TCCCAT  97
      |||| || |||||||||| |||||| ||||||||  || |||| ||||| 
seq2  AACTAGT-ACTTCCAATG-TACTCC-TACTAAAA--GC-AGTCTTCCCAA  91

seq1  ATAATAAAGCAGCTTTTGACCTTTGATTCCGGAATCAATTATCAATTTTT  147
      ||||||||||||| ||||||| |||||||||| |||||||||||  ||||
seq2  ATAATAAAGCAGC-TTTGACC-TTGATTCCGG-ATCAATTATCA--TTTT  136

seq1  CATCAAATGCTCTCTCTCTCTCTCTCTCTCTCTCTCTCCCTCTCTCTCTC  197
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATCAAATGCTCTCTCTCTCTCTCTCTCTCTCTCTCTCCCTCTCTCTCTC  186

seq1  TCTCTTAGAGAGAGGAATATATGAAGTAGAGTTAATGAAATATTAATGTC  247
      ||||||||||||| ||||||||||||||||||||||| ||||||||||||
seq2  TCTCTTAGAGAGA-GAATATATGAAGTAGAGTTAATG-AATATTAATGTC  234

seq1  TTCATTTTGAATTGTAACACCAGAAGC-AACAATATATTTAATGAGCCCT  296
      ||||||||||| ||||||||||||||| ||||||||||||||||||||||
seq2  TTCATTTTGAA-TGTAACACCAGAAGCAAACAATATATTTAATGAGCCCT  283

seq1  TTATGTACCATATATCATTCTAGACACACTGGTACATGATTGAATTCACT  346
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTATGTACCATATATCATTCTAGACACACTGGTACATGATTGAATTCACT  333

seq1  TAATAGGTTGGTGGCAGATGGTTCTGCTAGTGAAATAAATTTTAATAGTG  396
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAATAGGTTGGTGGCAGATGGTTCTGCTAGTGAAATAAATTTTAATAGTG  383

seq1  AAAATAATATAAAAATTAACCTAAATATCTCAAATATCAGATAATATAAA  446
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAATAATATAAAAATTAACCTAAATATCTCAAATATCAGATAATATAAA  433

seq1  TGACTATACCTTTCTACTTATGAGCACAACTCATGCTATAAACTAATATG  496
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGACTATACCTTTCTACTTATGAGCACAACTCATGCTATAAACTAATATG  483

seq1  CATTAATAACATTGTTTTGTTCAATATAAAGACTGATTGGTCTGAAAGTT  546
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATTAATAACATTGTTTTGTTCAATATAAAGACTGATTGGTCTGAAAGTT  533

seq1  TAATATTGAATACCTTGGAACTATGGTCAATATTAGAATTTGAGGGTCAG  596
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAATATTGAATACCTTGGAACTATGGTCAATATTAGAATTTGAGGGTCAG  583

seq1  TTATTTTGAAACTTTATAGCATTATTGACTACATGGAGGTGAAAACTTAT  646
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTATTTTGAAACTTTATAGCATTATTGACTACATGGAGGTGAAAACTTAT  633

seq1  AAAGAATCCAACATACTAGAAAAGGCTCATTTGAATGTAAACCATCTGCC  696
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGAATCCAACATACTAGAAAAGGCTCATTTGAATGTAAACCATCTGCC  683

seq1  ACGTTAAAGCTACATTAATATAACAGAAATAATTATCTCATAGTCATGTT  746
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACGTTAAAGCTACATTAATATAACAGAAATAATTATCTCATAGTCATGTT  733

seq1  GGAGAGTTAAAACTTATCTCTATTATGCTATGAACTTTTGTTCTCTGAAT  796
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAGAGTTAAAACTTATCTCTATTATGCTATGAACTTTTGTTCTCTGAAT  783

seq1  ATATGAAATGTGGAAGCTGGCTGAAGATCTCTAGGAGCTCATGGGAGATG  846
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATGAAATGTGGAAGCTGGCTGAAGATCTCTAGGAGCTCATGGGAGATG  833

seq1  ACTAGGAAACTGTATTCCATTATTGACGGTCACTGTGGACACAATCCTAC  896
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTAGGAAACTGTATTCCATTATTGACGGTCACTGTGGACACAATCCTAC  883

seq1  TGTGGTTCCCATCACTTGAGTTATTAAAAAAGAAGAACAAAGACGAGAGC  946
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGGTTCCCATCACTTGAGTTATTAAAAAAGAAGAACAAAGACGAGAGC  933

seq1  ATGCAGCTAGGAAAACAGAGAGGACTTTGGATCACGAATAACCTTCTGAT  996
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGCAGCTAGGAAAACAGAGAGGACTTTGGATCACGAATAACCTTCTGAT  983

seq1  CAATTTTCTACAAGAAAGAAAAAAAGATGATTTAAAGAAGTGAAAATGCC  1046
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAATTTTCTACAAGAAAGAAAAAAAGATGATTTAAAGAAGTGAAAATGCC  1033

seq1  ATGACAAATACCTTCTGGATCTGCTCAGAATCCTCATCACATTAGAAGCT  1096
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGACAAATACCTTCTGGATCTGCTCAGAATCCTCATCACATTAGAAGCT  1083

seq1  ATCTCTAATCAAGGATGCTTTCAAGGGCATGTGAATTC  1134
      ||||||||||||||||||||||||||||||||||||||
seq2  ATCTCTAATCAAGGATGCTTTCAAGGGCATGTGAATTC  1121